Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS06135

Experiment: LB_noSalt with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS06130 and QEN71_RS06135 are separated by 47 nucleotidesQEN71_RS06135 and QEN71_RS06140 are separated by 170 nucleotides QEN71_RS06130: QEN71_RS06130 - cysteine--tRNA ligase, at 1,361,686 to 1,363,083 _RS06130 QEN71_RS06135: QEN71_RS06135 - DNA-3-methyladenine glycosylase, at 1,363,131 to 1,364,192 _RS06135 QEN71_RS06140: QEN71_RS06140 - acetyl-CoA carboxylase carboxyltransferase subunit alpha, at 1,364,363 to 1,365,334 _RS06140 Position (kb) 1363 1364 1365Strain fitness (log2 ratio) -1 0 1at 1363.094 kb on + strandat 1363.094 kb on + strandat 1363.094 kb on + strandat 1363.094 kb on + strandat 1363.157 kb on + strandat 1363.195 kb on + strandat 1364.207 kb on + strandat 1364.207 kb on + strandat 1364.207 kb on + strandat 1364.207 kb on + strandat 1364.231 kb on + strandat 1364.231 kb on + strandat 1364.231 kb on + strandat 1364.231 kb on + strandat 1364.232 kb on - strandat 1364.267 kb on + strandat 1364.267 kb on + strandat 1364.267 kb on + strandat 1364.267 kb on + strandat 1364.278 kb on + strandat 1364.278 kb on + strandat 1364.323 kb on + strandat 1364.323 kb on + strandat 1364.323 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Cobalt chloride 0.25 mM
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1,363,094 + +0.2
1,363,094 + -0.5
1,363,094 + +0.2
1,363,094 + -0.1
1,363,157 + -0.3
1,363,195 + -0.0
1,364,207 + -0.6
1,364,207 + -0.8
1,364,207 + -0.1
1,364,207 + -0.7
1,364,231 + -0.6
1,364,231 + +0.4
1,364,231 + -0.1
1,364,231 + +1.7
1,364,232 - -0.1
1,364,267 + -0.3
1,364,267 + +0.5
1,364,267 + -0.3
1,364,267 + +1.0
1,364,278 + -1.3
1,364,278 + -1.1
1,364,323 + +0.8
1,364,323 + +0.1
1,364,323 + -0.0

Or see this region's nucleotide sequence