Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03830

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5
4,278,599	-		MIT1002_03829	0.36	-2.1
4,278,606	-		MIT1002_03829	0.37	-1.5
4,278,606	-		MIT1002_03829	0.37	+1.1
4,278,639	+		MIT1002_03829	0.40	-1.6
4,278,639	+		MIT1002_03829	0.40	-1.6
4,278,643	-		MIT1002_03829	0.40	+0.4
4,278,647	+		MIT1002_03829	0.41	-0.2
4,278,647	+		MIT1002_03829	0.41	-2.8
4,278,693	+		MIT1002_03829	0.46	-1.1
4,278,782	+		MIT1002_03829	0.55	-0.6
4,278,789	+		MIT1002_03829	0.56	-0.7
4,278,810	-		MIT1002_03829	0.58	-1.7
4,278,869	+		MIT1002_03829	0.64	-2.1
4,278,869	+		MIT1002_03829	0.64	-0.3
4,278,897	+		MIT1002_03829	0.67	-2.9
4,278,905	-		MIT1002_03829	0.68	+0.7
4,278,905	-		MIT1002_03829	0.68	-0.5
4,278,922	-		MIT1002_03829	0.70	-1.7
4,278,976	+		MIT1002_03829	0.75	-2.4
4,279,021	+		MIT1002_03829	0.80	-0.6
4,279,029	-		MIT1002_03829	0.81	-0.3
4,279,056	+		MIT1002_03829	0.84	-1.8
4,279,058	+		MIT1002_03829	0.84	-1.0
4,279,096	-		MIT1002_03829	0.88	-0.3
4,279,096	-		MIT1002_03829	0.88	+0.0
4,279,104	+		MIT1002_03829	0.89	-2.5
4,279,125	+				-1.0
4,279,125	+				+0.5
4,279,125	+				-1.2
4,279,134	+				-2.8
4,279,222	+				-2.6
4,279,237	+				-3.1
4,279,246	+				-0.2
4,279,462	-				+1.0
4,279,479	+				-1.4
4,279,520	-				-0.9
4,279,594	+				-3.7
4,279,607	-				-2.9
4,279,653	-		MIT1002_03830	0.12	-1.0
4,279,729	+		MIT1002_03830	0.22	-1.4
4,279,748	+		MIT1002_03830	0.24	-0.2
4,279,758	+		MIT1002_03830	0.26	+0.2
4,279,763	+		MIT1002_03830	0.26	+0.0
4,279,893	+		MIT1002_03830	0.44	-3.2
4,279,901	-		MIT1002_03830	0.45	-2.7
4,279,908	+		MIT1002_03830	0.46	-3.5
4,279,911	-		MIT1002_03830	0.46	-2.9
4,279,966	+		MIT1002_03830	0.53	-3.0
4,279,966	+		MIT1002_03830	0.53	-1.7
4,279,986	+		MIT1002_03830	0.56	-1.8
4,279,989	-		MIT1002_03830	0.57	-1.4
4,279,991	+		MIT1002_03830	0.57	-2.6
4,279,999	-		MIT1002_03830	0.58	+1.2
4,280,031	+		MIT1002_03830	0.62	+1.3
4,280,039	-		MIT1002_03830	0.63	-2.8
4,280,177	-		MIT1002_03830	0.82	-1.8
4,280,183	+		MIT1002_03830	0.82	-2.1
4,280,225	-		MIT1002_03830	0.88	-1.2
4,280,225	-		MIT1002_03830	0.88	-1.4
4,280,235	-		MIT1002_03830	0.89	-1.7
4,280,266	+				-0.8
4,280,280	-				-3.1
4,280,312	+				-2.0
4,280,325	-				-2.5
4,280,386	+				-1.3
4,280,447	+				-1.1
4,280,449	+				-1.2
4,280,465	+				+1.5
4,280,475	-				-1.4
4,280,490	+		MIT1002_03831	0.10	-0.3
4,280,492	-		MIT1002_03831	0.10	-0.1
4,280,504	-		MIT1002_03831	0.12	+0.1
4,280,522	-		MIT1002_03831	0.14	+0.7
4,280,546	+		MIT1002_03831	0.18	-0.0
4,280,553	+		MIT1002_03831	0.18	-0.6
4,280,553	+		MIT1002_03831	0.18	+1.7
4,280,561	-		MIT1002_03831	0.20	+2.6
4,280,561	-		MIT1002_03831	0.20	-1.2
4,280,592	+		MIT1002_03831	0.24	-0.2
4,280,628	-		MIT1002_03831	0.28	+0.7
4,280,647	+		MIT1002_03831	0.31	+0.2
4,280,647	+		MIT1002_03831	0.31	+0.1
4,280,652	+		MIT1002_03831	0.32	-0.6
4,280,654	+		MIT1002_03831	0.32	+0.7
4,280,655	-		MIT1002_03831	0.32	-0.3
4,280,660	-		MIT1002_03831	0.33	-0.2
4,280,662	-		MIT1002_03831	0.33	-1.0
4,280,662	-		MIT1002_03831	0.33	+0.5
4,280,682	-		MIT1002_03831	0.36	-0.1
4,280,922	+		MIT1002_03831	0.67	+0.1
4,280,922	+		MIT1002_03831	0.67	+0.3
4,280,930	+		MIT1002_03831	0.69	-0.3
4,280,930	-		MIT1002_03831	0.69	+2.3
4,280,944	-		MIT1002_03831	0.70	+2.7
4,280,954	-		MIT1002_03831	0.72	+0.5
4,281,000	-		MIT1002_03831	0.78	+0.0
4,281,063	-		MIT1002_03831	0.86	-0.3
4,281,101	+				+0.7
4,281,107	+				+1.8
4,281,115	-				-0.2
4,281,132	+				-0.3
4,281,140	-				+3.0
4,281,140	-				-1.4
4,281,140	-				-0.6
4,281,146	-				-2.9
4,281,146	-				-0.3
4,281,186	-				-1.7
4,281,270	+				-0.3
4,281,299	+				+0.0