Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03274

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5
3,647,687	+		MIT1002_03273	0.35	+2.1
3,647,749	-		MIT1002_03273	0.41	-0.5
3,647,749	-		MIT1002_03273	0.41	+1.9
3,647,749	-		MIT1002_03273	0.41	+0.8
3,647,863	-		MIT1002_03273	0.50	+2.1
3,647,897	+		MIT1002_03273	0.53	-0.9
3,647,968	+		MIT1002_03273	0.59	-1.6
3,647,975	+		MIT1002_03273	0.59	-0.4
3,647,975	+		MIT1002_03273	0.59	+0.6
3,647,975	+		MIT1002_03273	0.59	-1.3
3,647,976	-		MIT1002_03273	0.59	-0.2
3,647,983	-		MIT1002_03273	0.60	+0.2
3,648,047	-		MIT1002_03273	0.65	-0.8
3,648,103	+		MIT1002_03273	0.70	+0.0
3,648,103	+		MIT1002_03273	0.70	+2.9
3,648,134	+		MIT1002_03273	0.73	-0.7
3,648,173	+		MIT1002_03273	0.76	+0.2
3,648,181	-		MIT1002_03273	0.76	+1.6
3,648,214	+		MIT1002_03273	0.79	+1.7
3,648,267	+		MIT1002_03273	0.84	+0.0
3,648,302	+		MIT1002_03273	0.86	-0.5
3,648,302	+		MIT1002_03273	0.86	-0.8
3,648,302	+		MIT1002_03273	0.86	+1.3
3,648,310	-		MIT1002_03273	0.87	-0.1
3,648,345	-				+1.1
3,648,345	-				+0.2
3,648,380	+				+1.3
3,648,380	+				+0.7
3,648,380	+				-1.7
3,648,380	+				-1.8
3,648,388	-				-1.5
3,648,388	-				-0.7
3,648,388	-				+1.8
3,648,388	-				-1.1
3,648,388	-				-3.2
3,648,428	-				+0.6
3,648,482	-				-0.4
3,648,484	+				-0.9
3,648,493	-				-0.5
3,648,555	+				+1.1
3,648,557	+				-2.3
3,648,563	-				-0.9
3,648,565	-				+1.0
3,648,603	+				-0.9
3,648,603	-				-1.5
3,648,612	+				-0.4
3,648,620	-				-0.3
3,648,658	+				+0.9
3,648,658	+				-0.3
3,648,659	-				+0.8
3,648,666	-				+2.1
3,648,666	-				-0.7
3,648,693	-				+0.2
3,648,699	+				+0.2
3,648,763	-				+0.7
3,648,769	+				-0.1
3,648,782	+		MIT1002_03274	0.11	-0.2
3,648,818	+		MIT1002_03274	0.14	-0.2
3,648,868	-		MIT1002_03274	0.18	-0.9
3,648,869	+		MIT1002_03274	0.18	-0.0
3,648,886	+		MIT1002_03274	0.20	-0.5
3,648,891	+		MIT1002_03274	0.20	+0.7
3,648,894	-		MIT1002_03274	0.21	-1.3
3,648,978	-		MIT1002_03274	0.28	-2.3
3,648,981	+		MIT1002_03274	0.28	-3.0
3,648,981	+		MIT1002_03274	0.28	+0.7
3,649,164	+		MIT1002_03274	0.45	-0.6
3,649,215	+		MIT1002_03274	0.49	-0.6
3,649,222	-		MIT1002_03274	0.50	-0.8
3,649,222	-		MIT1002_03274	0.50	-0.4
3,649,223	-		MIT1002_03274	0.50	+0.6
3,649,316	-		MIT1002_03274	0.58	+0.5
3,649,323	+		MIT1002_03274	0.59	-0.4
3,649,386	+		MIT1002_03274	0.65	-1.3
3,649,439	-		MIT1002_03274	0.69	+0.8
3,649,463	-		MIT1002_03274	0.71	+1.1
3,649,493	+		MIT1002_03274	0.74	-0.6
3,649,498	+		MIT1002_03274	0.75	+2.0
3,649,555	+		MIT1002_03274	0.80	-2.1
3,649,563	-		MIT1002_03274	0.80	-0.4
3,649,563	-		MIT1002_03274	0.80	-0.4
3,649,582	+		MIT1002_03274	0.82	+0.9
3,649,582	+		MIT1002_03274	0.82	+0.8
3,649,582	+		MIT1002_03274	0.82	+0.2
3,649,582	+		MIT1002_03274	0.82	-0.2
3,649,582	+		MIT1002_03274	0.82	+0.5
3,649,726	-				+0.3
3,649,754	-				-1.1
3,649,760	-				-1.9
3,649,787	+				-1.9
3,649,836	+				+1.8
3,649,854	-				-1.3
3,650,210	+		MIT1002_03275	0.15	-2.6
3,650,210	+		MIT1002_03275	0.15	-0.0
3,650,210	+		MIT1002_03275	0.15	-0.2
3,650,216	+		MIT1002_03275	0.16	-2.0
3,650,216	+		MIT1002_03275	0.16	-0.5
3,650,218	-		MIT1002_03275	0.17	-1.3
3,650,218	-		MIT1002_03275	0.17	+0.7
3,650,218	-		MIT1002_03275	0.17	+0.4
3,650,218	-		MIT1002_03275	0.17	-2.2
3,650,218	-		MIT1002_03275	0.17	-0.7
3,650,218	-		MIT1002_03275	0.17	-0.2
3,650,224	-		MIT1002_03275	0.18	+1.3
3,650,224	-		MIT1002_03275	0.18	-1.0
3,650,230	+		MIT1002_03275	0.20	-1.1
3,650,250	-		MIT1002_03275	0.25	-2.1
3,650,251	-		MIT1002_03275	0.26	+0.1
3,650,252	-		MIT1002_03275	0.26	-0.7
3,650,268	+		MIT1002_03275	0.30	-0.6
3,650,278	+		MIT1002_03275	0.33	-0.3
3,650,280	+		MIT1002_03275	0.33	+0.3
3,650,286	-		MIT1002_03275	0.35	+0.1
3,650,379	-		MIT1002_03275	0.59	+0.4
3,650,420	+		MIT1002_03275	0.70	+0.6
3,650,442	-		MIT1002_03275	0.75	-0.6
3,650,538	-				+0.5
3,650,588	+		MIT1002_03276	0.27	+0.6
3,650,625	-		MIT1002_03276	0.41	+0.2
3,650,632	-		MIT1002_03276	0.44	+0.1
3,650,632	-		MIT1002_03276	0.44	-0.7
3,650,722	-		MIT1002_03276	0.78	-0.2
3,650,722	-		MIT1002_03276	0.78	+2.5
3,650,722	-		MIT1002_03276	0.78	-0.2
3,650,737	+		MIT1002_03276	0.83	+0.4