Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03219

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5
3,588,483	-				+0.3
3,588,485	+				-0.4
3,588,491	-				-0.7
3,588,493	-				-0.6
3,588,493	-				-3.0
3,588,498	-				-2.4
3,588,498	-				+0.1
3,588,544	-		MIT1002_03217	0.10	-1.8
3,588,607	+		MIT1002_03217	0.32	-1.1
3,588,607	+		MIT1002_03217	0.32	+0.2
3,588,607	+		MIT1002_03217	0.32	+0.3
3,588,615	-		MIT1002_03217	0.34	+2.4
3,588,691	+		MIT1002_03217	0.60	-1.1
3,588,691	+		MIT1002_03217	0.60	+1.1
3,588,696	+		MIT1002_03217	0.62	+2.6
3,588,731	+		MIT1002_03217	0.73	+1.4
3,588,739	-		MIT1002_03217	0.76	+1.1
3,588,868	+				-0.2
3,588,877	+				+0.6
3,588,885	-				+1.9
3,589,036	+		MIT1002_03218	0.39	+0.8
3,589,041	+		MIT1002_03218	0.41	-0.5
3,589,044	-		MIT1002_03218	0.41	+1.3
3,589,044	-		MIT1002_03218	0.41	-1.7
3,589,047	-		MIT1002_03218	0.42	+2.0
3,589,049	-		MIT1002_03218	0.43	+1.1
3,589,072	+		MIT1002_03218	0.48	-1.0
3,589,072	-		MIT1002_03218	0.48	+0.2
3,589,078	-		MIT1002_03218	0.50	-0.0
3,589,103	-		MIT1002_03218	0.56	-0.0
3,589,103	-		MIT1002_03218	0.56	+1.6
3,589,130	+		MIT1002_03218	0.62	+1.4
3,589,142	+		MIT1002_03218	0.65	+0.2
3,589,150	-		MIT1002_03218	0.67	-1.5
3,589,152	+		MIT1002_03218	0.68	-3.1
3,589,152	+		MIT1002_03218	0.68	-0.4
3,589,213	+		MIT1002_03218	0.83	-0.3
3,589,221	-		MIT1002_03218	0.85	+1.0
3,589,221	-		MIT1002_03218	0.85	+0.6
3,589,264	-				+2.2
3,589,377	-				+2.2
3,589,377	-				+1.0
3,589,445	+				+0.6
3,589,528	-		MIT1002_03219	0.10	+0.1
3,589,537	+		MIT1002_03219	0.12	-1.6
3,589,563	+		MIT1002_03219	0.18	-0.3
3,589,619	+		MIT1002_03219	0.30	-0.5
3,589,701	+		MIT1002_03219	0.49	-0.6
3,589,709	+		MIT1002_03219	0.51	+0.1
3,589,709	+		MIT1002_03219	0.51	+0.4
3,589,715	+		MIT1002_03219	0.52	-0.5
3,589,717	-		MIT1002_03219	0.52	+0.4
3,589,718	-		MIT1002_03219	0.53	-0.7
3,589,802	-		MIT1002_03219	0.71	-0.9
3,589,824	+		MIT1002_03219	0.76	-0.8
3,589,927	-				-0.6
3,589,931	+				+1.4
3,589,931	+				-0.1
3,589,931	+				-1.2
3,589,945	+				+1.1
3,589,953	-				+0.8
3,590,053	-				+0.4
3,590,112	+				-1.2
3,590,120	-				+0.7
3,590,130	+				+0.2
3,590,138	-				+0.8
3,590,166	+		MIT1002_03220	0.11	+1.7
3,590,221	+		MIT1002_03220	0.13	+1.2
3,590,229	-		MIT1002_03220	0.14	-1.2
3,590,343	-		MIT1002_03220	0.19	+0.1
3,590,354	-		MIT1002_03220	0.20	+0.7
3,590,479	-		MIT1002_03220	0.26	-0.3
3,590,513	-		MIT1002_03220	0.28	-0.1
3,590,513	-		MIT1002_03220	0.28	-0.6
3,590,557	-		MIT1002_03220	0.30	-1.2
3,590,567	+		MIT1002_03220	0.30	-0.4
3,590,570	+		MIT1002_03220	0.31	+1.1
3,590,614	-		MIT1002_03220	0.33	+0.3
3,590,697	+		MIT1002_03220	0.37	-1.8
3,590,755	-		MIT1002_03220	0.40	+0.4
3,590,850	-		MIT1002_03220	0.44	-0.9
3,590,855	-		MIT1002_03220	0.45	-0.4
3,590,870	-		MIT1002_03220	0.45	-1.5