Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03099

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_03098 and MIT1002_03099 are separated by 109 nucleotidesMIT1002_03099 and MIT1002_03100 are separated by 213 nucleotidesMIT1002_03100 and MIT1002_03101 are separated by 60 nucleotides MIT1002_03098: MIT1002_03098 - Signal transduction histidine-protein kinase ArlS, at 3,453,223 to 3,454,623 _03098 MIT1002_03099: MIT1002_03099 - ribose-5-phosphate isomerase B, at 3,454,733 to 3,455,371 _03099 MIT1002_03100: MIT1002_03100 - hypothetical protein, at 3,455,585 to 3,456,145 _03100 MIT1002_03101: MIT1002_03101 - hypothetical protein, at 3,456,206 to 3,456,862 _03101 Position (kb) 3454 3455 3456Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3453.739 kb on - strand, within MIT1002_03098at 3453.777 kb on + strand, within MIT1002_03098at 3453.801 kb on - strand, within MIT1002_03098at 3453.956 kb on + strand, within MIT1002_03098at 3454.007 kb on + strand, within MIT1002_03098at 3454.007 kb on + strand, within MIT1002_03098at 3454.007 kb on + strand, within MIT1002_03098at 3454.015 kb on - strand, within MIT1002_03098at 3454.015 kb on - strand, within MIT1002_03098at 3454.032 kb on - strand, within MIT1002_03098at 3454.096 kb on + strand, within MIT1002_03098at 3454.185 kb on + strand, within MIT1002_03098at 3454.193 kb on + strand, within MIT1002_03098at 3454.289 kb on + strand, within MIT1002_03098at 3454.320 kb on - strand, within MIT1002_03098at 3454.321 kb on + strand, within MIT1002_03098at 3454.329 kb on - strand, within MIT1002_03098at 3454.329 kb on - strand, within MIT1002_03098at 3454.334 kb on + strand, within MIT1002_03098at 3454.334 kb on + strand, within MIT1002_03098at 3454.374 kb on + strand, within MIT1002_03098at 3454.375 kb on - strand, within MIT1002_03098at 3454.377 kb on + strand, within MIT1002_03098at 3454.382 kb on - strand, within MIT1002_03098at 3454.413 kb on - strand, within MIT1002_03098at 3454.518 kb on - strandat 3454.522 kb on + strandat 3454.578 kb on + strandat 3454.586 kb on - strandat 3454.586 kb on - strandat 3454.593 kb on - strandat 3454.632 kb on - strandat 3454.766 kb on - strandat 3454.796 kb on - strandat 3454.832 kb on - strand, within MIT1002_03099at 3454.832 kb on - strand, within MIT1002_03099at 3454.832 kb on - strand, within MIT1002_03099at 3454.876 kb on - strand, within MIT1002_03099at 3454.876 kb on - strand, within MIT1002_03099at 3454.876 kb on - strand, within MIT1002_03099at 3454.956 kb on - strand, within MIT1002_03099at 3455.041 kb on - strand, within MIT1002_03099at 3455.125 kb on + strand, within MIT1002_03099at 3455.152 kb on - strand, within MIT1002_03099at 3455.185 kb on + strand, within MIT1002_03099at 3455.218 kb on - strand, within MIT1002_03099at 3455.255 kb on + strand, within MIT1002_03099at 3455.255 kb on + strand, within MIT1002_03099at 3455.255 kb on + strand, within MIT1002_03099at 3455.255 kb on + strand, within MIT1002_03099at 3455.263 kb on - strand, within MIT1002_03099at 3455.311 kb on + strandat 3455.377 kb on + strandat 3455.413 kb on + strandat 3455.436 kb on + strandat 3455.512 kb on - strandat 3455.590 kb on - strandat 3455.703 kb on - strand, within MIT1002_03100at 3455.712 kb on - strand, within MIT1002_03100at 3455.718 kb on + strand, within MIT1002_03100at 3455.778 kb on + strand, within MIT1002_03100at 3455.833 kb on + strand, within MIT1002_03100at 3455.833 kb on + strand, within MIT1002_03100at 3455.841 kb on - strand, within MIT1002_03100at 3455.841 kb on - strand, within MIT1002_03100at 3455.841 kb on - strand, within MIT1002_03100at 3455.857 kb on + strand, within MIT1002_03100at 3455.899 kb on + strand, within MIT1002_03100at 3455.900 kb on + strand, within MIT1002_03100at 3455.900 kb on + strand, within MIT1002_03100at 3455.908 kb on - strand, within MIT1002_03100at 3455.908 kb on - strand, within MIT1002_03100at 3455.953 kb on - strand, within MIT1002_03100at 3455.953 kb on - strand, within MIT1002_03100at 3455.969 kb on + strand, within MIT1002_03100at 3455.969 kb on + strand, within MIT1002_03100at 3455.969 kb on + strand, within MIT1002_03100at 3455.969 kb on + strand, within MIT1002_03100at 3455.969 kb on + strand, within MIT1002_03100at 3455.969 kb on + strand, within MIT1002_03100at 3455.977 kb on - strand, within MIT1002_03100at 3455.977 kb on - strand, within MIT1002_03100at 3455.977 kb on - strand, within MIT1002_03100at 3455.977 kb on - strand, within MIT1002_03100at 3455.977 kb on - strand, within MIT1002_03100at 3455.977 kb on - strand, within MIT1002_03100at 3455.977 kb on - strand, within MIT1002_03100at 3455.977 kb on - strand, within MIT1002_03100at 3455.977 kb on - strand, within MIT1002_03100at 3455.981 kb on + strand, within MIT1002_03100at 3455.981 kb on + strand, within MIT1002_03100at 3455.981 kb on + strand, within MIT1002_03100at 3455.989 kb on - strand, within MIT1002_03100at 3456.039 kb on + strand, within MIT1002_03100at 3456.047 kb on + strand, within MIT1002_03100at 3456.181 kb on + strandat 3456.197 kb on + strandat 3456.202 kb on + strandat 3456.292 kb on - strand, within MIT1002_03101at 3456.321 kb on - strand, within MIT1002_03101at 3456.337 kb on + strand, within MIT1002_03101at 3456.341 kb on + strand, within MIT1002_03101

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5
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3,453,739 - MIT1002_03098 0.37 +0.3
3,453,777 + MIT1002_03098 0.40 +0.6
3,453,801 - MIT1002_03098 0.41 +0.5
3,453,956 + MIT1002_03098 0.52 +0.8
3,454,007 + MIT1002_03098 0.56 +1.0
3,454,007 + MIT1002_03098 0.56 +0.8
3,454,007 + MIT1002_03098 0.56 -0.4
3,454,015 - MIT1002_03098 0.57 +0.7
3,454,015 - MIT1002_03098 0.57 +0.0
3,454,032 - MIT1002_03098 0.58 +0.3
3,454,096 + MIT1002_03098 0.62 -2.1
3,454,185 + MIT1002_03098 0.69 +0.8
3,454,193 + MIT1002_03098 0.69 -0.3
3,454,289 + MIT1002_03098 0.76 -0.3
3,454,320 - MIT1002_03098 0.78 +0.4
3,454,321 + MIT1002_03098 0.78 +0.3
3,454,329 - MIT1002_03098 0.79 -0.3
3,454,329 - MIT1002_03098 0.79 -0.4
3,454,334 + MIT1002_03098 0.79 -1.1
3,454,334 + MIT1002_03098 0.79 +1.8
3,454,374 + MIT1002_03098 0.82 -0.3
3,454,375 - MIT1002_03098 0.82 -1.6
3,454,377 + MIT1002_03098 0.82 -0.4
3,454,382 - MIT1002_03098 0.83 -0.2
3,454,413 - MIT1002_03098 0.85 +0.8
3,454,518 - -1.1
3,454,522 + -0.3
3,454,578 + +1.0
3,454,586 - -1.0
3,454,586 - -1.7
3,454,593 - -1.3
3,454,632 - +1.1
3,454,766 - +1.4
3,454,796 - -0.4
3,454,832 - MIT1002_03099 0.15 +1.4
3,454,832 - MIT1002_03099 0.15 -0.0
3,454,832 - MIT1002_03099 0.15 -1.8
3,454,876 - MIT1002_03099 0.22 +0.5
3,454,876 - MIT1002_03099 0.22 -0.3
3,454,876 - MIT1002_03099 0.22 +1.0
3,454,956 - MIT1002_03099 0.35 +1.7
3,455,041 - MIT1002_03099 0.48 -0.6
3,455,125 + MIT1002_03099 0.61 -0.7
3,455,152 - MIT1002_03099 0.66 -0.2
3,455,185 + MIT1002_03099 0.71 +3.2
3,455,218 - MIT1002_03099 0.76 -0.1
3,455,255 + MIT1002_03099 0.82 -1.7
3,455,255 + MIT1002_03099 0.82 +0.3
3,455,255 + MIT1002_03099 0.82 +3.0
3,455,255 + MIT1002_03099 0.82 +0.3
3,455,263 - MIT1002_03099 0.83 -0.7
3,455,311 + +0.3
3,455,377 + +0.3
3,455,413 + -1.7
3,455,436 + +0.3
3,455,512 - +0.9
3,455,590 - +0.2
3,455,703 - MIT1002_03100 0.21 -0.1
3,455,712 - MIT1002_03100 0.23 -1.1
3,455,718 + MIT1002_03100 0.24 -0.6
3,455,778 + MIT1002_03100 0.34 +1.0
3,455,833 + MIT1002_03100 0.44 -1.0
3,455,833 + MIT1002_03100 0.44 +1.6
3,455,841 - MIT1002_03100 0.46 -0.0
3,455,841 - MIT1002_03100 0.46 +0.2
3,455,841 - MIT1002_03100 0.46 -2.1
3,455,857 + MIT1002_03100 0.48 -0.4
3,455,899 + MIT1002_03100 0.56 +0.5
3,455,900 + MIT1002_03100 0.56 +1.1
3,455,900 + MIT1002_03100 0.56 +0.7
3,455,908 - MIT1002_03100 0.58 -0.0
3,455,908 - MIT1002_03100 0.58 -0.3
3,455,953 - MIT1002_03100 0.66 +1.3
3,455,953 - MIT1002_03100 0.66 -0.9
3,455,969 + MIT1002_03100 0.68 +1.1
3,455,969 + MIT1002_03100 0.68 +0.6
3,455,969 + MIT1002_03100 0.68 +1.8
3,455,969 + MIT1002_03100 0.68 -0.9
3,455,969 + MIT1002_03100 0.68 +0.6
3,455,969 + MIT1002_03100 0.68 +1.4
3,455,977 - MIT1002_03100 0.70 +0.4
3,455,977 - MIT1002_03100 0.70 -0.9
3,455,977 - MIT1002_03100 0.70 +1.0
3,455,977 - MIT1002_03100 0.70 -0.2
3,455,977 - MIT1002_03100 0.70 +0.4
3,455,977 - MIT1002_03100 0.70 +1.3
3,455,977 - MIT1002_03100 0.70 -1.0
3,455,977 - MIT1002_03100 0.70 +0.6
3,455,977 - MIT1002_03100 0.70 -0.9
3,455,981 + MIT1002_03100 0.71 -0.7
3,455,981 + MIT1002_03100 0.71 +2.0
3,455,981 + MIT1002_03100 0.71 -1.7
3,455,989 - MIT1002_03100 0.72 +3.1
3,456,039 + MIT1002_03100 0.81 +0.5
3,456,047 + MIT1002_03100 0.82 +1.5
3,456,181 + -0.4
3,456,197 + -1.0
3,456,202 + +1.0
3,456,292 - MIT1002_03101 0.13 +0.1
3,456,321 - MIT1002_03101 0.18 +0.5
3,456,337 + MIT1002_03101 0.20 -0.9
3,456,341 + MIT1002_03101 0.21 +0.1

Or see this region's nucleotide sequence