Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03092

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5
3,446,728	+				+1.0
3,446,747	+				-0.3
3,446,814	-				+0.0
3,446,814	-				-1.9
3,446,858	+				-1.8
3,446,916	+				-1.8
3,446,924	-				+0.7
3,446,934	-				+0.4
3,447,036	+				-3.1
3,447,040	+				-0.9
3,447,057	+				-2.7
3,447,057	+				+0.6
3,447,065	-				+1.1
3,447,123	+		MIT1002_03091	0.27	-2.2
3,447,138	+		MIT1002_03091	0.31	+0.1
3,447,243	+		MIT1002_03091	0.61	-2.2
3,447,298	-		MIT1002_03091	0.77	-1.5
3,447,324	-		MIT1002_03091	0.85	+1.8
3,447,336	-		MIT1002_03091	0.88	-1.3
3,447,360	-				+1.0
3,447,360	-				+2.6
3,447,436	+				+1.1
3,447,454	+				-2.0
3,447,454	+				-1.6
3,447,454	+				+0.2
3,447,454	+				+1.8
3,447,462	-				-0.9
3,447,462	-				-0.0
3,447,462	-				-0.8
3,447,462	-				+1.6
3,447,497	-				-1.0
3,447,512	+				+0.7
3,447,512	+				+1.4
3,447,512	+				-0.5
3,447,520	-				-0.0
3,447,520	-				+1.1
3,447,522	+				-0.7
3,447,602	+		MIT1002_03092	0.12	+1.7
3,447,690	+		MIT1002_03092	0.30	-3.0
3,447,691	-		MIT1002_03092	0.31	-0.3
3,447,714	-		MIT1002_03092	0.35	-0.4
3,447,787	-		MIT1002_03092	0.51	+1.1
3,447,805	-		MIT1002_03092	0.55	+1.7
3,447,810	-		MIT1002_03092	0.56	-0.2
3,447,846	+		MIT1002_03092	0.64	+0.2
3,447,846	-		MIT1002_03092	0.64	+1.7
3,447,864	+		MIT1002_03092	0.68	-0.0
3,447,883	+		MIT1002_03092	0.72	-0.1
3,447,901	+		MIT1002_03092	0.75	-0.7
3,448,023	+				+0.6
3,448,072	+				-1.0
3,448,072	+				-0.9
3,448,080	-				+0.2
3,448,181	-		MIT1002_03093	0.22	-1.4
3,448,290	+		MIT1002_03093	0.36	-1.0
3,448,429	+		MIT1002_03093	0.54	+0.3
3,448,430	+		MIT1002_03093	0.54	-1.1
3,448,430	+		MIT1002_03093	0.54	+1.2
3,448,461	+		MIT1002_03093	0.58	-1.3
3,448,470	-		MIT1002_03093	0.59	-1.8
3,448,493	-		MIT1002_03093	0.62	-1.2
3,448,570	-		MIT1002_03093	0.72	-0.0
3,448,570	-		MIT1002_03093	0.72	-1.7
3,448,570	-		MIT1002_03093	0.72	-3.1
3,448,623	+		MIT1002_03093	0.79	+0.6
3,448,630	+		MIT1002_03093	0.80	-1.6
3,448,631	-		MIT1002_03093	0.80	+1.3
3,448,665	-		MIT1002_03093	0.85	-0.7
3,448,665	-		MIT1002_03093	0.85	+0.3
3,448,716	+				-0.6
3,448,724	-				+1.0
3,448,729	-				-0.2
3,448,744	+				-0.9
3,448,844	-				-0.1
3,448,844	-				-0.1
3,448,865	+				-0.6
3,448,865	+				+1.0
3,448,873	-				+0.3
3,448,873	-				-0.1
3,448,873	-				-1.3
3,448,923	+		MIT1002_03094	0.11	-1.1
3,448,931	-		MIT1002_03094	0.12	+0.8