Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02878

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5
3,193,872	+		MIT1002_02876	0.64	-0.5
3,193,993	-		MIT1002_02876	0.76	-0.9
3,194,011	-		MIT1002_02876	0.77	-0.7
3,194,015	+		MIT1002_02876	0.78	+1.0
3,194,018	-		MIT1002_02876	0.78	-0.7
3,194,022	+		MIT1002_02876	0.78	+0.1
3,194,143	-		MIT1002_02876	0.90	-2.0
3,194,143	-		MIT1002_02876	0.90	+0.8
3,194,145	+				+1.1
3,194,147	+				+1.8
3,194,155	-				-1.4
3,194,217	+				-0.6
3,194,225	-				+1.4
3,194,394	+				-0.5
3,194,399	+				+0.4
3,194,402	-				-0.5
3,194,409	+				-0.7
3,194,423	+				-0.3
3,194,431	-				+1.7
3,194,483	+				+1.1
3,194,486	-				+0.2
3,194,491	-				-0.6
3,194,491	-				-1.1
3,194,594	+		MIT1002_02877	0.34	-1.2
3,194,600	-		MIT1002_02877	0.36	+0.3
3,194,602	-		MIT1002_02877	0.36	-0.1
3,194,610	+		MIT1002_02877	0.39	+1.7
3,194,618	-		MIT1002_02877	0.41	-0.9
3,194,623	-		MIT1002_02877	0.43	-0.7
3,194,623	-		MIT1002_02877	0.43	+2.5
3,194,635	-		MIT1002_02877	0.46	-0.9
3,194,709	+		MIT1002_02877	0.67	+0.2
3,194,775	+		MIT1002_02877	0.86	+1.8
3,194,787	+		MIT1002_02877	0.90	-1.1
3,194,795	-				-0.5
3,194,795	-				+0.2
3,194,817	+				-0.8
3,194,837	-				+0.2
3,194,874	+				+0.5
3,194,892	+				+0.5
3,195,035	+		MIT1002_02878	0.18	+2.1
3,195,035	+		MIT1002_02878	0.18	-1.6
3,195,059	+		MIT1002_02878	0.21	+0.2
3,195,067	-		MIT1002_02878	0.22	+0.5
3,195,067	-		MIT1002_02878	0.22	+2.1
3,195,128	-		MIT1002_02878	0.29	-1.4
3,195,272	+		MIT1002_02878	0.45	-0.4
3,195,280	-		MIT1002_02878	0.45	-0.6
3,195,329	+		MIT1002_02878	0.51	+0.8
3,195,329	+		MIT1002_02878	0.51	+0.6
3,195,329	+		MIT1002_02878	0.51	+0.1
3,195,329	+		MIT1002_02878	0.51	-0.7
3,195,329	+		MIT1002_02878	0.51	+1.8
3,195,337	-		MIT1002_02878	0.52	+0.1
3,195,337	-		MIT1002_02878	0.52	+1.0
3,195,339	+		MIT1002_02878	0.52	+1.7
3,195,389	+		MIT1002_02878	0.58	+0.4
3,195,397	-		MIT1002_02878	0.58	+0.4
3,195,445	-		MIT1002_02878	0.64	+0.2
3,195,460	+		MIT1002_02878	0.65	+3.4
3,195,536	-		MIT1002_02878	0.74	+0.1
3,195,566	-		MIT1002_02878	0.77	+1.8
3,195,598	-		MIT1002_02878	0.81	-0.8
3,195,632	+		MIT1002_02878	0.84	-2.5
3,195,684	+				-0.7
3,195,741	+				+0.9
3,195,757	-				+0.2
3,195,861	-				+1.5
3,195,891	+				-0.7
3,195,960	+				-0.1
3,195,968	-				-1.1
3,195,989	-				+0.4
3,196,049	-				+0.0
3,196,049	-				-2.7
3,196,119	+				-2.0
3,196,150	+				-2.4
3,196,158	-				-0.7
3,196,158	-				+0.1
3,196,236	+				+1.1
3,196,244	-				-0.7
3,196,287	+				+0.5
3,196,287	+				+0.5
3,196,461	-		MIT1002_02879	0.13	-1.2
3,196,522	-		MIT1002_02879	0.15	-1.2
3,196,561	+		MIT1002_02879	0.16	+1.1
3,196,601	-		MIT1002_02879	0.17	-2.1
3,196,612	+		MIT1002_02879	0.18	-0.1
3,196,725	+		MIT1002_02879	0.22	+0.3