Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02871

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5
3,185,689	-				-0.6
3,185,721	-				+0.5
3,185,779	+				-1.6
3,185,779	+				-1.4
3,185,793	+				+0.9
3,185,831	+				-0.2
3,185,850	-				-0.9
3,185,858	-				-2.6
3,185,940	-		MIT1002_02870	0.15	+0.5
3,185,990	+		MIT1002_02870	0.21	-3.2
3,186,076	-		MIT1002_02870	0.31	+0.5
3,186,201	+		MIT1002_02870	0.46	-0.2
3,186,237	-		MIT1002_02870	0.50	-3.3
3,186,240	+		MIT1002_02870	0.50	-1.4
3,186,293	-		MIT1002_02870	0.57	+0.8
3,186,314	-		MIT1002_02870	0.59	+0.5
3,186,316	-		MIT1002_02870	0.60	+0.1
3,186,370	+		MIT1002_02870	0.66	+0.1
3,186,370	+		MIT1002_02870	0.66	-0.1
3,186,378	-		MIT1002_02870	0.67	+0.7
3,186,388	+		MIT1002_02870	0.68	-0.5
3,186,409	+		MIT1002_02870	0.71	+0.4
3,186,409	+		MIT1002_02870	0.71	+0.4
3,186,442	+		MIT1002_02870	0.75	+1.8
3,186,442	+		MIT1002_02870	0.75	+1.1
3,186,442	+		MIT1002_02870	0.75	+0.5
3,186,442	+		MIT1002_02870	0.75	-0.8
3,186,450	-		MIT1002_02870	0.75	+0.3
3,186,450	-		MIT1002_02870	0.75	-1.6
3,186,450	-		MIT1002_02870	0.75	+1.4
3,186,450	-		MIT1002_02870	0.75	-1.6
3,186,450	-		MIT1002_02870	0.75	+0.1
3,186,452	+		MIT1002_02870	0.76	+2.1
3,186,460	-		MIT1002_02870	0.77	-2.3
3,186,462	+		MIT1002_02870	0.77	-2.8
3,186,470	-		MIT1002_02870	0.78	-1.6
3,186,520	+		MIT1002_02870	0.84	+1.9
3,186,541	+		MIT1002_02870	0.86	-0.4
3,186,541	+		MIT1002_02870	0.86	-1.1
3,186,541	+		MIT1002_02870	0.86	+1.6
3,186,606	-				-0.4
3,186,616	+				-1.4
3,186,690	-				+0.1
3,186,765	+				-2.8
3,186,794	+				+0.8
3,186,794	+				+0.8
3,186,799	+				+0.8
3,186,807	+		MIT1002_02871	0.11	+0.1
3,186,827	+		MIT1002_02871	0.12	-4.0
3,186,876	+		MIT1002_02871	0.15	-0.7
3,186,895	+		MIT1002_02871	0.17	-0.9
3,186,895	+		MIT1002_02871	0.17	-1.9
3,186,903	-		MIT1002_02871	0.17	-0.6
3,186,934	-		MIT1002_02871	0.20	-0.9
3,186,934	-		MIT1002_02871	0.20	+1.4
3,187,050	+		MIT1002_02871	0.28	+0.2
3,187,109	+		MIT1002_02871	0.32	-0.2
3,187,128	+		MIT1002_02871	0.33	-1.3
3,187,128	+		MIT1002_02871	0.33	-2.7
3,187,136	+		MIT1002_02871	0.34	+0.5
3,187,136	-		MIT1002_02871	0.34	-0.6
3,187,136	-		MIT1002_02871	0.34	-0.3
3,187,136	-		MIT1002_02871	0.34	-0.5
3,187,179	-		MIT1002_02871	0.37	-0.7
3,187,228	+		MIT1002_02871	0.40	-1.0
3,187,237	-		MIT1002_02871	0.41	+0.9
3,187,237	-		MIT1002_02871	0.41	-1.2
3,187,264	-		MIT1002_02871	0.43	-2.2
3,187,314	-		MIT1002_02871	0.46	+0.5
3,187,359	+		MIT1002_02871	0.50	+0.6
3,187,367	-		MIT1002_02871	0.50	-0.3
3,187,367	-		MIT1002_02871	0.50	-1.9
3,187,367	-		MIT1002_02871	0.50	-2.2
3,187,367	-		MIT1002_02871	0.50	-2.1
3,187,376	-		MIT1002_02871	0.51	-2.3
3,187,376	-		MIT1002_02871	0.51	-0.9
3,187,376	-		MIT1002_02871	0.51	-0.3
3,187,467	+		MIT1002_02871	0.57	+0.5
3,187,484	+		MIT1002_02871	0.58	+0.4
3,187,492	-		MIT1002_02871	0.59	-0.8
3,187,492	-		MIT1002_02871	0.59	-0.1
3,187,492	-		MIT1002_02871	0.59	-1.3
3,187,492	-		MIT1002_02871	0.59	-0.1
3,187,554	+		MIT1002_02871	0.63	+0.1
3,187,561	+		MIT1002_02871	0.64	-1.2
3,187,633	+		MIT1002_02871	0.69	-1.7
3,187,640	-		MIT1002_02871	0.69	-1.7
3,187,659	-		MIT1002_02871	0.71	-1.8
3,187,659	-		MIT1002_02871	0.71	-0.7
3,187,774	+		MIT1002_02871	0.79	-0.3
3,187,803	+		MIT1002_02871	0.81	-1.4
3,187,806	-		MIT1002_02871	0.81	-0.4
3,187,811	-		MIT1002_02871	0.82	-2.3
3,187,827	+		MIT1002_02871	0.83	-0.2
3,187,827	+		MIT1002_02871	0.83	-0.4
3,187,835	-		MIT1002_02871	0.83	-0.4
3,187,883	+		MIT1002_02871	0.87	+0.3
3,187,893	+		MIT1002_02871	0.87	+1.2
3,187,955	+				-0.9
3,188,005	+				-0.4
3,188,070	+				-0.8
3,188,156	+				+0.3
3,188,251	+				+0.6
3,188,259	-				+1.1
3,188,285	+		MIT1002_02872	0.10	-0.6
3,188,298	+		MIT1002_02872	0.12	+0.2
3,188,365	+		MIT1002_02872	0.23	-0.9
3,188,367	+		MIT1002_02872	0.23	-1.0
3,188,373	-		MIT1002_02872	0.24	+1.0
3,188,401	+		MIT1002_02872	0.29	-1.2
3,188,411	+		MIT1002_02872	0.30	-1.6
3,188,444	+		MIT1002_02872	0.35	-0.1
3,188,452	-		MIT1002_02872	0.37	-1.8
3,188,488	+		MIT1002_02872	0.42	-1.0
3,188,488	+		MIT1002_02872	0.42	+1.4
3,188,556	-		MIT1002_02872	0.53	-1.0
3,188,568	-		MIT1002_02872	0.55	-1.6
3,188,597	-		MIT1002_02872	0.60	+1.3
3,188,614	+		MIT1002_02872	0.62	-1.5
3,188,637	-		MIT1002_02872	0.66	+1.5
3,188,661	+		MIT1002_02872	0.70	-0.5
3,188,818	+				+1.4
3,188,914	+				-1.8
3,188,976	+				-0.4
3,189,016	+				-2.0
3,189,034	+				-2.1
3,189,034	+				-2.4
3,189,042	-		MIT1002_02873	0.10	-0.1