Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02818

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5
3,121,821	+		MIT1002_02816	0.68	+1.0
3,121,821	+		MIT1002_02816	0.68	-0.6
3,121,821	+		MIT1002_02816	0.68	-0.0
3,121,821	+		MIT1002_02816	0.68	+0.6
3,121,821	+		MIT1002_02816	0.68	-1.5
3,121,829	-		MIT1002_02816	0.70	-0.9
3,121,829	-		MIT1002_02816	0.70	+2.2
3,122,031	+				-0.9
3,122,039	-		MIT1002_02817	0.10	+0.6
3,122,123	-		MIT1002_02817	0.23	+0.2
3,122,140	-		MIT1002_02817	0.25	-1.6
3,122,161	+		MIT1002_02817	0.28	+0.6
3,122,229	+		MIT1002_02817	0.38	-0.4
3,122,229	+		MIT1002_02817	0.38	-1.4
3,122,362	+		MIT1002_02817	0.58	-0.9
3,122,517	+		MIT1002_02817	0.81	-0.5
3,122,519	+		MIT1002_02817	0.81	-2.6
3,122,529	+		MIT1002_02817	0.82	-1.4
3,122,545	+		MIT1002_02817	0.85	-0.7
3,122,600	+				-2.0
3,122,600	+				+1.2
3,122,711	+				-2.9
3,122,760	-				-0.1
3,122,762	+				+2.4
3,122,762	+				+1.2
3,122,762	+				+1.3
3,122,762	+				+0.2
3,122,762	+				-0.2
3,122,770	-				+1.8
3,122,770	-				+0.2
3,122,770	-				+1.4
3,122,770	-				-1.3
3,122,775	+				+0.7
3,122,781	-				-1.2
3,122,815	-				-2.7
3,122,863	-				-0.1
3,122,915	+		MIT1002_02818	0.11	+1.8
3,122,915	+		MIT1002_02818	0.11	-1.5
3,122,973	+		MIT1002_02818	0.17	-0.0
3,122,981	-		MIT1002_02818	0.17	+0.4
3,122,985	+		MIT1002_02818	0.18	-0.2
3,122,985	+		MIT1002_02818	0.18	-0.9
3,122,985	+		MIT1002_02818	0.18	-0.3
3,123,188	+		MIT1002_02818	0.37	-1.9
3,123,258	-		MIT1002_02818	0.44	+1.9
3,123,284	-		MIT1002_02818	0.46	-1.5
3,123,290	-		MIT1002_02818	0.47	+1.6
3,123,373	+		MIT1002_02818	0.55	+1.3
3,123,420	+		MIT1002_02818	0.59	+2.5
3,123,420	+		MIT1002_02818	0.59	+0.7
3,123,420	+		MIT1002_02818	0.59	+0.5
3,123,420	+		MIT1002_02818	0.59	-0.3
3,123,420	+		MIT1002_02818	0.59	+1.2
3,123,420	+		MIT1002_02818	0.59	+0.1
3,123,428	-		MIT1002_02818	0.60	-0.0
3,123,428	-		MIT1002_02818	0.60	+1.2
3,123,428	-		MIT1002_02818	0.60	-1.7
3,123,428	-		MIT1002_02818	0.60	-1.3
3,123,428	-		MIT1002_02818	0.60	-1.2
3,123,428	-		MIT1002_02818	0.60	+0.1
3,123,428	-		MIT1002_02818	0.60	+1.4
3,123,428	-		MIT1002_02818	0.60	-0.6
3,123,428	-		MIT1002_02818	0.60	-1.5
3,123,428	-		MIT1002_02818	0.60	+1.6
3,123,432	+		MIT1002_02818	0.60	+0.5
3,123,432	+		MIT1002_02818	0.60	+0.1
3,123,432	+		MIT1002_02818	0.60	-1.0
3,123,432	+		MIT1002_02818	0.60	-0.9
3,123,440	-		MIT1002_02818	0.61	+0.6
3,123,440	-		MIT1002_02818	0.61	-0.2
3,123,440	-		MIT1002_02818	0.61	+0.9
3,123,471	+		MIT1002_02818	0.64	-2.6
3,123,524	-		MIT1002_02818	0.69	-2.7
3,123,566	-		MIT1002_02818	0.73	-0.8
3,123,594	+		MIT1002_02818	0.75	+1.3
3,123,599	+		MIT1002_02818	0.76	+1.2
3,123,599	+		MIT1002_02818	0.76	+0.1
3,123,607	-		MIT1002_02818	0.77	+0.0
3,123,607	-		MIT1002_02818	0.77	-1.7
3,123,607	-		MIT1002_02818	0.77	+0.4
3,123,607	-		MIT1002_02818	0.77	+0.1
3,123,607	-		MIT1002_02818	0.77	-0.9
3,123,661	+		MIT1002_02818	0.82	-0.7
3,123,778	-				-0.8
3,123,778	-				-1.8
3,123,810	-				+0.2
3,123,847	+				+1.3
3,123,929	+		MIT1002_02819	0.10	-0.6
3,123,929	+		MIT1002_02819	0.10	-1.3
3,123,940	+		MIT1002_02819	0.12	-1.6
3,124,000	+		MIT1002_02819	0.21	-1.9
3,124,008	-		MIT1002_02819	0.22	-0.4
3,124,043	+		MIT1002_02819	0.28	-0.4
3,124,043	+		MIT1002_02819	0.28	-0.4
3,124,049	-		MIT1002_02819	0.29	-2.0
3,124,049	-		MIT1002_02819	0.29	-0.4
3,124,060	-		MIT1002_02819	0.30	+1.7
3,124,078	-		MIT1002_02819	0.33	-0.9
3,124,231	+		MIT1002_02819	0.57	+0.3
3,124,251	+		MIT1002_02819	0.60	+0.5
3,124,251	+		MIT1002_02819	0.60	+0.1
3,124,258	-		MIT1002_02819	0.61	+0.8
3,124,259	-		MIT1002_02819	0.61	+0.6
3,124,259	-		MIT1002_02819	0.61	+1.8
3,124,259	-		MIT1002_02819	0.61	-1.9
3,124,266	-		MIT1002_02819	0.62	-1.0
3,124,294	-		MIT1002_02819	0.67	-0.6
3,124,337	+		MIT1002_02819	0.73	+2.0
3,124,347	-		MIT1002_02819	0.75	-1.6
3,124,379	-		MIT1002_02819	0.80	-0.9
3,124,402	+		MIT1002_02819	0.83	-0.7
3,124,475	-				-0.2
3,124,476	-				-0.2
3,124,537	+				-0.8
3,124,542	+				-0.6
3,124,550	-				+1.2
3,124,550	-				-0.7
3,124,550	-				-0.3
3,124,653	+		MIT1002_02820	0.31	-0.8
3,124,697	-		MIT1002_02820	0.41	-1.5
3,124,720	+		MIT1002_02820	0.47	+2.7