Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02285

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5
2,548,110	+		MIT1002_02284	0.50	+0.6
2,548,113	-		MIT1002_02284	0.50	+2.5
2,548,179	-		MIT1002_02284	0.55	-0.7
2,548,228	-		MIT1002_02284	0.59	+1.9
2,548,230	+		MIT1002_02284	0.60	+1.5
2,548,238	-		MIT1002_02284	0.60	-1.5
2,548,277	-		MIT1002_02284	0.63	-0.3
2,548,282	-		MIT1002_02284	0.64	+0.0
2,548,288	+		MIT1002_02284	0.64	+0.4
2,548,288	+		MIT1002_02284	0.64	+0.0
2,548,374	+		MIT1002_02284	0.71	+2.1
2,548,378	-		MIT1002_02284	0.72	-1.0
2,548,399	-		MIT1002_02284	0.73	+0.7
2,548,417	+		MIT1002_02284	0.75	+0.9
2,548,417	+		MIT1002_02284	0.75	+0.6
2,548,425	-		MIT1002_02284	0.75	+1.3
2,548,425	-		MIT1002_02284	0.75	+0.6
2,548,484	-		MIT1002_02284	0.80	+1.1
2,548,494	+		MIT1002_02284	0.81	+0.4
2,548,494	+		MIT1002_02284	0.81	+0.2
2,548,494	+		MIT1002_02284	0.81	+1.2
2,548,494	+		MIT1002_02284	0.81	-1.4
2,548,501	+		MIT1002_02284	0.81	+0.6
2,548,502	-		MIT1002_02284	0.82	+0.6
2,548,502	-		MIT1002_02284	0.82	+0.1
2,548,502	-		MIT1002_02284	0.82	-1.1
2,548,502	-		MIT1002_02284	0.82	-0.1
2,548,536	+		MIT1002_02284	0.84	+0.3
2,548,539	-		MIT1002_02284	0.85	+2.7
2,548,737	+				-0.4
2,548,748	+				-1.1
2,548,756	-				-1.1
2,548,783	+				-0.1
2,548,783	+				-1.2
2,548,784	-				-1.6
2,548,791	-				+0.3
2,548,791	-				+0.8
2,548,791	-				-0.7
2,548,804	+				-0.5
2,548,812	-				-0.7
2,548,851	-				-2.1
2,548,853	+				+0.8
2,548,861	-				-1.0
2,548,873	+				+1.4
2,549,018	-				+0.0
2,549,024	-				-0.0
2,549,025	-				-0.5
2,549,030	-				-0.2
2,549,091	+				-0.2
2,549,099	-				+0.1
2,549,156	-		MIT1002_02285	0.15	-2.1
2,549,203	+		MIT1002_02285	0.30	+0.6
2,549,205	+		MIT1002_02285	0.31	-2.1
2,549,216	+		MIT1002_02285	0.34	+0.9
2,549,234	-		MIT1002_02285	0.40	+0.1
2,549,248	-		MIT1002_02285	0.45	-1.7
2,549,374	-		MIT1002_02285	0.85	-1.1
2,549,387	+		MIT1002_02285	0.90	-2.6
2,549,388	-				-1.0
2,549,399	+				+1.2
2,549,399	+				-0.6
2,549,399	+				+0.1
2,549,399	+				-2.4
2,549,399	+				+0.3
2,549,399	+				-0.7
2,549,399	+				-0.7
2,549,407	-				-0.8
2,549,407	-				-2.4
2,549,407	-				-0.3
2,549,407	-				-1.3
2,549,407	-				-0.7
2,549,407	-				-1.2
2,549,407	-				-0.1
2,549,489	-				+0.5
2,549,602	-				-2.1
2,549,657	-		MIT1002_02286	0.13	-1.0
2,549,675	+		MIT1002_02286	0.15	-0.1
2,549,675	+		MIT1002_02286	0.15	-2.3
2,549,675	+		MIT1002_02286	0.15	-1.1
2,549,675	+		MIT1002_02286	0.15	-1.2
2,549,675	+		MIT1002_02286	0.15	-0.9
2,549,675	+		MIT1002_02286	0.15	-1.1
2,549,675	+		MIT1002_02286	0.15	-1.3
2,549,683	-		MIT1002_02286	0.15	-1.6
2,549,683	-		MIT1002_02286	0.15	-0.7
2,549,683	-		MIT1002_02286	0.15	-2.1
2,549,683	-		MIT1002_02286	0.15	-0.6
2,549,683	-		MIT1002_02286	0.15	-3.2
2,549,683	-		MIT1002_02286	0.15	-1.2
2,549,746	+		MIT1002_02286	0.22	-1.5
2,549,844	-		MIT1002_02286	0.33	-1.4
2,549,844	-		MIT1002_02286	0.33	-0.2
2,549,884	+		MIT1002_02286	0.37	-2.8
2,549,931	-		MIT1002_02286	0.42	-3.1
2,549,937	+		MIT1002_02286	0.43	-1.2
2,550,030	+		MIT1002_02286	0.53	-2.6
2,550,113	+		MIT1002_02286	0.62	+1.2
2,550,251	+		MIT1002_02286	0.77	+0.6
2,550,254	-		MIT1002_02286	0.77	-1.9
2,550,347	+		MIT1002_02286	0.87	-4.7
2,550,347	+		MIT1002_02286	0.87	-1.5
2,550,355	-		MIT1002_02286	0.88	-2.0
2,550,355	-		MIT1002_02286	0.88	-0.1
2,550,375	-				-0.5