Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02284

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5
2,546,514	-		MIT1002_02283	0.69	+0.1
2,546,514	-		MIT1002_02283	0.69	-2.2
2,546,547	-		MIT1002_02283	0.70	+0.1
2,546,603	+		MIT1002_02283	0.71	-1.6
2,546,712	-		MIT1002_02283	0.75	-0.1
2,546,782	+		MIT1002_02283	0.77	-1.2
2,546,782	+		MIT1002_02283	0.77	-0.7
2,546,790	-		MIT1002_02283	0.77	+0.6
2,546,790	-		MIT1002_02283	0.77	-0.4
2,546,790	-		MIT1002_02283	0.77	+0.8
2,546,795	-		MIT1002_02283	0.78	+0.5
2,546,805	+		MIT1002_02283	0.78	-0.2
2,546,839	-		MIT1002_02283	0.79	-0.6
2,546,867	-		MIT1002_02283	0.80	+0.9
2,547,126	+		MIT1002_02283	0.88	-0.1
2,547,126	+		MIT1002_02283	0.88	+0.2
2,547,194	+				+0.2
2,547,217	+				+0.4
2,547,242	+				+1.1
2,547,242	+				+0.3
2,547,242	+				+0.4
2,547,242	+				-1.5
2,547,242	+				-1.1
2,547,250	-				-0.3
2,547,250	-				-0.6
2,547,250	-				+0.7
2,547,285	-				-0.4
2,547,294	+				+0.1
2,547,304	-				+0.2
2,547,318	-				-1.4
2,547,418	+				-2.0
2,547,432	+				+0.8
2,547,442	+				+0.4
2,547,447	+				-1.7
2,547,472	+				-2.2
2,547,490	-				+1.7
2,547,515	-				+0.9
2,547,516	+				+0.1
2,547,519	-				+1.9
2,547,521	+				-0.8
2,547,574	+				+0.6
2,547,617	-				-0.8
2,547,625	+		MIT1002_02284	0.11	-2.4
2,547,630	+		MIT1002_02284	0.11	-0.4
2,547,633	-		MIT1002_02284	0.11	+0.4
2,547,654	-		MIT1002_02284	0.13	+1.1
2,547,725	-		MIT1002_02284	0.19	+0.4
2,547,779	+		MIT1002_02284	0.23	+0.7
2,547,899	+		MIT1002_02284	0.33	+0.3
2,547,899	+		MIT1002_02284	0.33	+0.3
2,547,899	+		MIT1002_02284	0.33	+1.7
2,547,903	-		MIT1002_02284	0.33	-0.5
2,547,907	-		MIT1002_02284	0.33	-1.3
2,547,907	-		MIT1002_02284	0.33	+0.2
2,547,907	-		MIT1002_02284	0.33	-0.4
2,547,944	+		MIT1002_02284	0.36	+1.4
2,547,986	-		MIT1002_02284	0.40	+1.2
2,548,003	-		MIT1002_02284	0.41	-2.1
2,548,011	+		MIT1002_02284	0.42	-0.9
2,548,019	-		MIT1002_02284	0.42	+1.6
2,548,064	-		MIT1002_02284	0.46	+0.9
2,548,064	-		MIT1002_02284	0.46	+0.9
2,548,100	+		MIT1002_02284	0.49	+0.4
2,548,108	-		MIT1002_02284	0.50	-2.3
2,548,108	-		MIT1002_02284	0.50	+0.5
2,548,108	-		MIT1002_02284	0.50	+0.1
2,548,108	-		MIT1002_02284	0.50	-0.1
2,548,110	+		MIT1002_02284	0.50	+0.6
2,548,113	-		MIT1002_02284	0.50	+2.5
2,548,179	-		MIT1002_02284	0.55	-0.7
2,548,228	-		MIT1002_02284	0.59	+1.9
2,548,230	+		MIT1002_02284	0.60	+1.5
2,548,238	-		MIT1002_02284	0.60	-1.5
2,548,277	-		MIT1002_02284	0.63	-0.3
2,548,282	-		MIT1002_02284	0.64	+0.0
2,548,288	+		MIT1002_02284	0.64	+0.4
2,548,288	+		MIT1002_02284	0.64	+0.0
2,548,374	+		MIT1002_02284	0.71	+2.1
2,548,378	-		MIT1002_02284	0.72	-1.0
2,548,399	-		MIT1002_02284	0.73	+0.7
2,548,417	+		MIT1002_02284	0.75	+0.9
2,548,417	+		MIT1002_02284	0.75	+0.6
2,548,425	-		MIT1002_02284	0.75	+1.3
2,548,425	-		MIT1002_02284	0.75	+0.6
2,548,484	-		MIT1002_02284	0.80	+1.1
2,548,494	+		MIT1002_02284	0.81	+0.4
2,548,494	+		MIT1002_02284	0.81	+0.2
2,548,494	+		MIT1002_02284	0.81	+1.2
2,548,494	+		MIT1002_02284	0.81	-1.4
2,548,501	+		MIT1002_02284	0.81	+0.6
2,548,502	-		MIT1002_02284	0.82	+0.6
2,548,502	-		MIT1002_02284	0.82	+0.1
2,548,502	-		MIT1002_02284	0.82	-1.1
2,548,502	-		MIT1002_02284	0.82	-0.1
2,548,536	+		MIT1002_02284	0.84	+0.3
2,548,539	-		MIT1002_02284	0.85	+2.7
2,548,737	+				-0.4
2,548,748	+				-1.1
2,548,756	-				-1.1
2,548,783	+				-0.1
2,548,783	+				-1.2
2,548,784	-				-1.6
2,548,791	-				+0.3
2,548,791	-				+0.8
2,548,791	-				-0.7
2,548,804	+				-0.5
2,548,812	-				-0.7
2,548,851	-				-2.1
2,548,853	+				+0.8
2,548,861	-				-1.0
2,548,873	+				+1.4
2,549,018	-				+0.0
2,549,024	-				-0.0
2,549,025	-				-0.5
2,549,030	-				-0.2
2,549,091	+				-0.2
2,549,099	-				+0.1
2,549,156	-		MIT1002_02285	0.15	-2.1
2,549,203	+		MIT1002_02285	0.30	+0.6
2,549,205	+		MIT1002_02285	0.31	-2.1
2,549,216	+		MIT1002_02285	0.34	+0.9
2,549,234	-		MIT1002_02285	0.40	+0.1
2,549,248	-		MIT1002_02285	0.45	-1.7
2,549,374	-		MIT1002_02285	0.85	-1.1
2,549,387	+		MIT1002_02285	0.90	-2.6
2,549,388	-				-1.0
2,549,399	+				+1.2
2,549,399	+				-0.6
2,549,399	+				+0.1
2,549,399	+				-2.4
2,549,399	+				+0.3
2,549,399	+				-0.7
2,549,399	+				-0.7
2,549,407	-				-0.8
2,549,407	-				-2.4
2,549,407	-				-0.3
2,549,407	-				-1.3
2,549,407	-				-0.7
2,549,407	-				-1.2
2,549,407	-				-0.1
2,549,489	-				+0.5
2,549,602	-				-2.1
2,549,657	-		MIT1002_02286	0.13	-1.0
2,549,675	+		MIT1002_02286	0.15	-0.1
2,549,675	+		MIT1002_02286	0.15	-2.3
2,549,675	+		MIT1002_02286	0.15	-1.1
2,549,675	+		MIT1002_02286	0.15	-1.2
2,549,675	+		MIT1002_02286	0.15	-0.9
2,549,675	+		MIT1002_02286	0.15	-1.1
2,549,675	+		MIT1002_02286	0.15	-1.3
2,549,683	-		MIT1002_02286	0.15	-1.6
2,549,683	-		MIT1002_02286	0.15	-0.7
2,549,683	-		MIT1002_02286	0.15	-2.1
2,549,683	-		MIT1002_02286	0.15	-0.6
2,549,683	-		MIT1002_02286	0.15	-3.2
2,549,683	-		MIT1002_02286	0.15	-1.2