Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02082

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5
2,340,742	-		MIT1002_02080	0.60	+0.0
2,340,765	+		MIT1002_02080	0.63	+0.8
2,340,771	-		MIT1002_02080	0.64	+0.1
2,340,773	-		MIT1002_02080	0.64	-0.4
2,340,822	+		MIT1002_02080	0.70	-1.4
2,340,822	+		MIT1002_02080	0.70	-1.0
2,340,822	+		MIT1002_02080	0.70	+1.3
2,340,830	-		MIT1002_02080	0.71	+2.3
2,340,849	+		MIT1002_02080	0.73	+0.7
2,340,964	+		MIT1002_02080	0.87	-0.2
2,340,972	-		MIT1002_02080	0.88	+1.7
2,340,972	-		MIT1002_02080	0.88	-2.4
2,340,984	+		MIT1002_02080	0.90	+0.4
2,340,993	-				-0.1
2,341,174	+		MIT1002_02081	0.14	+2.1
2,341,202	+		MIT1002_02081	0.19	-0.0
2,341,339	+		MIT1002_02081	0.43	+0.3
2,341,473	-		MIT1002_02081	0.66	+0.2
2,341,522	+		MIT1002_02081	0.75	+0.3
2,341,522	+		MIT1002_02081	0.75	+0.3
2,341,522	+		MIT1002_02081	0.75	-2.5
2,341,530	-		MIT1002_02081	0.76	+0.4
2,341,538	+		MIT1002_02081	0.77	-1.3
2,341,540	-		MIT1002_02081	0.78	-0.2
2,341,545	-		MIT1002_02081	0.79	-1.8
2,341,546	-		MIT1002_02081	0.79	-0.4
2,341,781	+				-1.8
2,341,781	-				+0.6
2,341,791	+				-0.3
2,341,794	-				-0.1
2,341,809	-				-3.1
2,341,878	+		MIT1002_02082	0.11	-0.1
2,341,883	-		MIT1002_02082	0.11	-2.2
2,341,911	-		MIT1002_02082	0.13	-1.4
2,341,911	-		MIT1002_02082	0.13	+1.4
2,341,913	+		MIT1002_02082	0.13	-0.0
2,341,913	-		MIT1002_02082	0.13	+0.2
2,341,952	+		MIT1002_02082	0.16	-1.2
2,341,973	+		MIT1002_02082	0.18	-0.6
2,341,976	-		MIT1002_02082	0.18	+0.5
2,342,008	+		MIT1002_02082	0.20	+2.0
2,342,008	+		MIT1002_02082	0.20	+0.5
2,342,016	-		MIT1002_02082	0.21	-1.0
2,342,016	-		MIT1002_02082	0.21	+0.6
2,342,107	-		MIT1002_02082	0.28	-2.1
2,342,198	+		MIT1002_02082	0.35	+0.9
2,342,206	-		MIT1002_02082	0.35	+0.3
2,342,213	+		MIT1002_02082	0.36	-2.0
2,342,240	-		MIT1002_02082	0.38	+1.3
2,342,255	-		MIT1002_02082	0.39	+0.2
2,342,293	+		MIT1002_02082	0.42	-1.9
2,342,296	-		MIT1002_02082	0.42	+1.7
2,342,302	+		MIT1002_02082	0.43	-0.2
2,342,310	-		MIT1002_02082	0.43	+0.7
2,342,310	-		MIT1002_02082	0.43	-1.4
2,342,322	+		MIT1002_02082	0.44	+1.3
2,342,335	-		MIT1002_02082	0.45	-0.0
2,342,439	+		MIT1002_02082	0.53	+0.5
2,342,447	-		MIT1002_02082	0.53	+1.0
2,342,452	+		MIT1002_02082	0.54	+0.8
2,342,610	+		MIT1002_02082	0.66	+0.3
2,342,625	-		MIT1002_02082	0.67	+2.3
2,342,719	-		MIT1002_02082	0.74	+0.1
2,342,757	-		MIT1002_02082	0.77	-0.8
2,342,868	-		MIT1002_02082	0.85	-1.9
2,342,870	+		MIT1002_02082	0.85	+0.9
2,342,870	+		MIT1002_02082	0.85	+1.8
2,342,870	+		MIT1002_02082	0.85	-0.7
2,342,893	-		MIT1002_02082	0.87	+1.8
2,342,941	-				+0.9
2,342,951	+				+0.2
2,343,131	+				+2.2
2,343,140	-				+0.0
2,343,150	-				+0.3
2,343,153	+				-1.0
2,343,153	+				+1.1
2,343,161	+				-2.0
2,343,161	-				-0.2
2,343,169	-				+0.0
2,343,170	+				-2.3
2,343,181	+				-0.1
2,343,185	-				-0.2
2,343,196	-				-1.0
2,343,226	+				+0.1
2,343,233	+				-0.7
2,343,285	+		MIT1002_02083	0.11	+1.1
2,343,600	-		MIT1002_02083	0.28	-0.6
2,343,628	+		MIT1002_02083	0.29	-0.8
2,343,636	-		MIT1002_02083	0.30	-0.4
2,343,676	+		MIT1002_02083	0.32	-1.4
2,343,684	-		MIT1002_02083	0.32	+1.2
2,343,690	+		MIT1002_02083	0.32	+1.1
2,343,713	+		MIT1002_02083	0.34	-0.0
2,343,774	+		MIT1002_02083	0.37	+1.2
2,343,782	-		MIT1002_02083	0.37	-1.3
2,343,812	+		MIT1002_02083	0.39	+0.7
2,343,878	-		MIT1002_02083	0.42	-2.0
2,343,879	+		MIT1002_02083	0.43	-0.9
2,343,913	+		MIT1002_02083	0.44	+1.0
2,343,976	-		MIT1002_02083	0.48	-1.5