Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02048

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5
2,301,239	+		MIT1002_02047	0.33	+0.5
2,301,263	+		MIT1002_02047	0.35	+0.4
2,301,264	-		MIT1002_02047	0.35	-0.1
2,301,271	-		MIT1002_02047	0.36	-1.0
2,301,277	-		MIT1002_02047	0.36	+1.0
2,301,291	-		MIT1002_02047	0.37	-0.0
2,301,363	+		MIT1002_02047	0.42	+1.1
2,301,485	-		MIT1002_02047	0.51	+1.6
2,301,490	-		MIT1002_02047	0.52	+0.1
2,301,551	+		MIT1002_02047	0.56	+0.0
2,301,551	+		MIT1002_02047	0.56	+4.4
2,301,641	-		MIT1002_02047	0.63	+0.6
2,301,669	-		MIT1002_02047	0.65	+1.0
2,301,669	-		MIT1002_02047	0.65	-0.1
2,301,718	-		MIT1002_02047	0.68	-2.0
2,301,792	-		MIT1002_02047	0.74	-1.2
2,301,859	-		MIT1002_02047	0.79	-0.8
2,301,908	-		MIT1002_02047	0.82	+0.6
2,301,908	-		MIT1002_02047	0.82	+0.3
2,301,965	-		MIT1002_02047	0.86	-1.4
2,302,073	+				-0.2
2,302,148	+				+1.1
2,302,234	-				-1.1
2,302,239	-				+1.2
2,302,239	-				-0.6
2,302,242	-				+0.6
2,302,274	+				-0.4
2,302,363	-				-0.6
2,302,396	+				-0.1
2,302,487	+		MIT1002_02048	0.13	+1.9
2,302,489	+		MIT1002_02048	0.13	+2.5
2,302,575	+		MIT1002_02048	0.18	-0.3
2,302,608	+		MIT1002_02048	0.20	+0.4
2,302,608	+		MIT1002_02048	0.20	+0.9
2,302,608	+		MIT1002_02048	0.20	+1.4
2,302,608	+		MIT1002_02048	0.20	-0.0
2,302,616	-		MIT1002_02048	0.20	-1.5
2,302,616	-		MIT1002_02048	0.20	+0.1
2,302,616	-		MIT1002_02048	0.20	+1.0
2,302,616	-		MIT1002_02048	0.20	+0.5
2,302,616	-		MIT1002_02048	0.20	-0.8
2,302,616	-		MIT1002_02048	0.20	-2.2
2,302,748	-		MIT1002_02048	0.27	+1.4
2,302,758	+		MIT1002_02048	0.28	+1.7
2,302,766	-		MIT1002_02048	0.28	+0.7
2,302,818	+		MIT1002_02048	0.31	-0.7
2,302,828	+		MIT1002_02048	0.31	+0.9
2,302,828	+		MIT1002_02048	0.31	+0.3
2,302,857	-		MIT1002_02048	0.33	+0.7
2,302,869	-		MIT1002_02048	0.33	+0.4
2,303,003	+		MIT1002_02048	0.41	-1.0
2,303,003	+		MIT1002_02048	0.41	+0.9
2,303,011	-		MIT1002_02048	0.41	+0.9
2,303,028	+		MIT1002_02048	0.42	+2.1
2,303,078	-		MIT1002_02048	0.45	-2.1
2,303,121	-		MIT1002_02048	0.47	-1.5
2,303,208	+		MIT1002_02048	0.51	+0.0
2,303,208	+		MIT1002_02048	0.51	-1.8
2,303,208	+		MIT1002_02048	0.51	-1.0
2,303,208	+		MIT1002_02048	0.51	+0.0
2,303,216	-		MIT1002_02048	0.52	+2.3
2,303,216	-		MIT1002_02048	0.52	-1.1
2,303,378	+		MIT1002_02048	0.60	-0.0
2,303,411	+		MIT1002_02048	0.62	+1.6
2,303,501	-		MIT1002_02048	0.67	-2.0
2,303,569	+		MIT1002_02048	0.70	-2.0
2,303,569	+		MIT1002_02048	0.70	-1.0
2,303,569	+		MIT1002_02048	0.70	+0.3
2,303,569	+		MIT1002_02048	0.70	-1.1
2,303,573	+		MIT1002_02048	0.71	+0.3
2,303,577	-		MIT1002_02048	0.71	+1.1
2,303,577	-		MIT1002_02048	0.71	-0.7
2,303,577	-		MIT1002_02048	0.71	-0.3
2,303,577	-		MIT1002_02048	0.71	+0.3
2,303,577	-		MIT1002_02048	0.71	-1.2
2,303,580	+		MIT1002_02048	0.71	+1.0
2,303,588	-		MIT1002_02048	0.71	-2.3
2,303,617	+		MIT1002_02048	0.73	+0.8
2,303,734	+		MIT1002_02048	0.79	+2.0
2,303,734	+		MIT1002_02048	0.79	+1.6
2,303,768	+		MIT1002_02048	0.81	-1.3
2,303,809	-		MIT1002_02048	0.83	+0.2
2,303,839	+		MIT1002_02048	0.85	+2.5
2,303,848	+		MIT1002_02048	0.85	-1.3
2,303,924	+		MIT1002_02048	0.89	+0.0
2,303,924	+		MIT1002_02048	0.89	+0.2
2,303,932	-		MIT1002_02048	0.90	-1.7
2,303,932	-		MIT1002_02048	0.90	-1.0
2,303,932	-		MIT1002_02048	0.90	-0.1
2,303,979	+				+2.0
2,303,979	+				+1.0
2,304,004	-				+0.4
2,304,014	+				-2.7
2,304,027	+				-2.6
2,304,037	+				+1.2
2,304,045	-				-0.5
2,304,289	-				+1.1
2,304,311	+				-0.1
2,304,311	+				-1.7
2,304,321	-				+1.3
2,304,355	+				-1.3
2,304,427	-				+0.1
2,304,437	+				-1.2
2,304,450	+				-1.0
2,304,557	+				+1.9
2,304,684	-		MIT1002_02049	0.12	+1.1
2,304,730	-		MIT1002_02049	0.14	+0.9
2,304,743	+		MIT1002_02049	0.14	+0.5
2,304,827	-		MIT1002_02049	0.17	+0.6
2,304,922	+		MIT1002_02049	0.20	-0.6
2,304,922	+		MIT1002_02049	0.20	+0.7
2,304,976	+		MIT1002_02049	0.22	-0.3
2,304,983	-		MIT1002_02049	0.22	-0.3
2,304,983	-		MIT1002_02049	0.22	-0.4
2,305,008	+		MIT1002_02049	0.23	+0.1
2,305,022	+		MIT1002_02049	0.24	-2.0
2,305,034	+		MIT1002_02049	0.24	-1.9
2,305,047	-		MIT1002_02049	0.25	+1.5
2,305,087	+		MIT1002_02049	0.26	-1.4