Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01778

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5
1,973,331	-		MIT1002_01777	0.16	-2.4
1,973,339	-		MIT1002_01777	0.17	-0.9
1,973,420	+		MIT1002_01777	0.27	+1.2
1,973,520	-		MIT1002_01777	0.39	-2.0
1,973,543	-		MIT1002_01777	0.42	-1.5
1,973,681	-		MIT1002_01777	0.59	-1.6
1,973,790	-		MIT1002_01777	0.72	-2.3
1,973,790	-		MIT1002_01777	0.72	+0.9
1,973,852	-		MIT1002_01777	0.80	+0.2
1,973,865	+		MIT1002_01777	0.82	-1.5
1,973,873	-		MIT1002_01777	0.83	-2.7
1,973,902	+		MIT1002_01777	0.86	-1.4
1,973,970	-				-0.2
1,974,035	+				-1.5
1,974,040	+				-3.1
1,974,040	+				+1.2
1,974,073	-				-2.3
1,974,179	-				-0.0
1,974,198	+				-1.8
1,974,219	-				-0.2
1,974,219	-				-0.2
1,974,219	-				-0.1
1,974,358	+				-1.4
1,974,497	+		MIT1002_01778	0.19	-1.4
1,974,497	+		MIT1002_01778	0.19	+0.9
1,974,497	+		MIT1002_01778	0.19	-1.2
1,974,499	+		MIT1002_01778	0.19	+0.9
1,974,543	+		MIT1002_01778	0.22	-0.8
1,974,551	-		MIT1002_01778	0.22	+0.2
1,974,551	-		MIT1002_01778	0.22	-2.5
1,974,616	-		MIT1002_01778	0.26	-2.2
1,974,728	-		MIT1002_01778	0.34	+2.1
1,974,728	-		MIT1002_01778	0.34	-1.0
1,974,728	-		MIT1002_01778	0.34	+1.2
1,974,728	-		MIT1002_01778	0.34	+0.6
1,974,798	+		MIT1002_01778	0.38	-0.5
1,974,800	+		MIT1002_01778	0.38	+1.5
1,974,806	-		MIT1002_01778	0.39	-0.1
1,974,853	-		MIT1002_01778	0.42	-0.9
1,974,925	-		MIT1002_01778	0.46	-1.2
1,974,926	+		MIT1002_01778	0.46	-1.1
1,974,934	-		MIT1002_01778	0.47	+1.4
1,974,958	+		MIT1002_01778	0.48	-0.5
1,974,958	+		MIT1002_01778	0.48	+1.0
1,974,958	+		MIT1002_01778	0.48	+0.1
1,974,958	+		MIT1002_01778	0.48	+0.3
1,974,998	+		MIT1002_01778	0.51	-1.2
1,974,998	+		MIT1002_01778	0.51	-0.9
1,975,109	-		MIT1002_01778	0.58	-1.6
1,975,145	+		MIT1002_01778	0.60	+0.4
1,975,146	+		MIT1002_01778	0.60	-0.4
1,975,146	+		MIT1002_01778	0.60	+1.0
1,975,146	+		MIT1002_01778	0.60	-0.9
1,975,146	+		MIT1002_01778	0.60	-0.7
1,975,154	-		MIT1002_01778	0.61	-0.4
1,975,154	-		MIT1002_01778	0.61	-1.3
1,975,160	+		MIT1002_01778	0.61	-1.7
1,975,160	+		MIT1002_01778	0.61	-0.6
1,975,162	-		MIT1002_01778	0.61	-1.8
1,975,201	+		MIT1002_01778	0.64	-1.3
1,975,209	-		MIT1002_01778	0.64	+0.6
1,975,249	+		MIT1002_01778	0.67	+1.6
1,975,296	-		MIT1002_01778	0.70	-1.7
1,975,363	+		MIT1002_01778	0.74	-0.8
1,975,429	+		MIT1002_01778	0.79	-1.5
1,975,437	+		MIT1002_01778	0.79	-0.6
1,975,464	+		MIT1002_01778	0.81	-1.2
1,975,528	+		MIT1002_01778	0.85	-0.2
1,975,607	+				+0.0
1,975,610	-				-0.8
1,975,615	-				+1.0
1,975,626	+				-0.3
1,975,626	+				+0.8
1,975,626	+				-0.4
1,975,634	-				+1.5
1,975,649	-				-0.0
1,975,666	-				+1.4
1,975,691	-				-1.2
1,975,715	+				-0.4
1,975,757	+				-0.6
1,975,801	+				-3.0
1,975,809	-				+0.7
1,975,811	+				-0.9
1,975,862	+				-2.1
1,975,877	-				-0.2
1,975,877	-				+0.6
1,975,925	+				-0.6
1,975,979	+				+1.9
1,975,987	-		MIT1002_01779	0.11	-0.7
1,976,008	-		MIT1002_01779	0.24	+1.1
1,976,094	+		MIT1002_01779	0.75	-0.1
1,976,094	+		MIT1002_01779	0.75	-0.8
1,976,100	-		MIT1002_01779	0.79	-0.8
1,976,132	+				+0.2
1,976,188	+				-0.4
1,976,193	+				-0.4
1,976,196	-				+0.6
1,976,212	+				-0.6
1,976,220	-				-1.1
1,976,327	+		MIT1002_01780	0.21	+0.5
1,976,335	-		MIT1002_01780	0.22	-1.8
1,976,375	+		MIT1002_01780	0.28	-1.5
1,976,375	+		MIT1002_01780	0.28	+0.1
1,976,383	-		MIT1002_01780	0.29	-0.1
1,976,383	-		MIT1002_01780	0.29	+0.2
1,976,383	-		MIT1002_01780	0.29	+1.9
1,976,479	+		MIT1002_01780	0.43	+0.5
1,976,479	+		MIT1002_01780	0.43	-1.1
1,976,583	+		MIT1002_01780	0.59	+0.1
1,976,608	-		MIT1002_01780	0.62	-0.4
1,976,620	+		MIT1002_01780	0.64	-0.2
1,976,695	-		MIT1002_01780	0.75	-1.8
1,976,695	-		MIT1002_01780	0.75	-0.8
1,976,709	+		MIT1002_01780	0.77	+0.3