Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01559

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5
1,711,397	+		MIT1002_01558	0.52	-2.5
1,711,404	+		MIT1002_01558	0.52	-2.0
1,711,479	-		MIT1002_01558	0.56	-0.1
1,711,479	-		MIT1002_01558	0.56	-0.4
1,711,518	+		MIT1002_01558	0.59	-0.2
1,711,596	+		MIT1002_01558	0.63	-0.3
1,711,601	+		MIT1002_01558	0.63	+0.8
1,711,601	+		MIT1002_01558	0.63	+0.6
1,711,601	+		MIT1002_01558	0.63	-0.4
1,711,601	+		MIT1002_01558	0.63	+1.3
1,711,601	+		MIT1002_01558	0.63	+1.3
1,711,609	-		MIT1002_01558	0.64	-0.3
1,711,609	-		MIT1002_01558	0.64	+0.1
1,711,609	-		MIT1002_01558	0.64	-0.9
1,711,609	-		MIT1002_01558	0.64	-1.6
1,711,609	-		MIT1002_01558	0.64	-1.6
1,711,609	-		MIT1002_01558	0.64	+0.4
1,711,659	-		MIT1002_01558	0.67	-2.1
1,711,712	-		MIT1002_01558	0.70	+1.6
1,711,723	+		MIT1002_01558	0.71	-0.5
1,711,731	-		MIT1002_01558	0.71	-0.1
1,711,789	+		MIT1002_01558	0.74	-0.1
1,711,789	+		MIT1002_01558	0.74	+0.0
1,711,789	+		MIT1002_01558	0.74	-1.5
1,711,789	+		MIT1002_01558	0.74	-2.0
1,711,790	+		MIT1002_01558	0.74	-0.4
1,711,797	-		MIT1002_01558	0.75	-0.1
1,711,797	-		MIT1002_01558	0.75	-0.8
1,711,824	-		MIT1002_01558	0.76	+1.3
1,711,824	-		MIT1002_01558	0.76	+0.4
1,711,837	+		MIT1002_01558	0.77	+1.3
1,711,837	+		MIT1002_01558	0.77	-0.2
1,711,837	+		MIT1002_01558	0.77	-1.8
1,711,837	+		MIT1002_01558	0.77	-2.1
1,711,845	-		MIT1002_01558	0.78	+1.3
1,711,954	-		MIT1002_01558	0.84	-2.3
1,712,223	+				-0.4
1,712,231	-				+2.0
1,712,234	+				-0.3
1,712,274	+				-1.2
1,712,283	-				-0.5
1,712,334	-				+0.5
1,712,366	+				+0.3
1,712,366	+				+0.3
1,712,369	-				+2.3
1,712,379	+				-0.1
1,712,379	+				+0.9
1,712,387	-				-2.2
1,712,403	+				+2.4
1,712,411	-				-3.1
1,712,430	+				-0.1
1,712,449	+				+1.5
1,712,459	+				+0.7
1,712,579	+				-0.7
1,712,613	-		MIT1002_01559	0.12	-0.2
1,712,693	-		MIT1002_01559	0.16	-2.0
1,712,762	+		MIT1002_01559	0.19	-0.1
1,712,869	-		MIT1002_01559	0.25	-0.2
1,712,935	-		MIT1002_01559	0.28	-0.4
1,712,972	-		MIT1002_01559	0.30	+2.3
1,713,022	+		MIT1002_01559	0.33	+0.2
1,713,035	-		MIT1002_01559	0.33	+0.2
1,713,045	-		MIT1002_01559	0.34	+1.9
1,713,117	+		MIT1002_01559	0.38	+0.2
1,713,125	-		MIT1002_01559	0.38	+0.3
1,713,264	-		MIT1002_01559	0.45	-1.7
1,713,277	+		MIT1002_01559	0.46	-0.3
1,713,277	+		MIT1002_01559	0.46	-1.1
1,713,357	+		MIT1002_01559	0.50	+0.2
1,713,510	-		MIT1002_01559	0.58	+1.0
1,713,533	+		MIT1002_01559	0.59	-0.6
1,713,541	-		MIT1002_01559	0.60	-0.4
1,713,552	-		MIT1002_01559	0.60	+0.9
1,713,630	-		MIT1002_01559	0.64	+2.3
1,713,630	-		MIT1002_01559	0.64	+0.3
1,713,686	-		MIT1002_01559	0.67	+0.4
1,713,695	-		MIT1002_01559	0.68	-1.2
1,713,776	+		MIT1002_01559	0.72	-0.2
1,713,823	+		MIT1002_01559	0.74	-1.1
1,713,984	+		MIT1002_01559	0.82	+3.6
1,714,117	-		MIT1002_01559	0.89	+0.9
1,714,148	+				-1.4
1,714,249	+				-0.6
1,714,252	+				+1.1
1,714,252	-				+0.7
1,714,257	-				+0.3
1,714,413	+				+0.1
1,714,513	+				-0.6
1,714,606	+				-1.3
1,714,609	-				-0.4
1,714,611	+				+0.0
1,714,635	-		MIT1002_01560	0.12	+0.9
1,714,675	+		MIT1002_01560	0.15	-0.2
1,714,685	+		MIT1002_01560	0.16	-0.2
1,714,703	-		MIT1002_01560	0.18	-2.1
1,714,812	+		MIT1002_01560	0.29	+1.1
1,714,813	-		MIT1002_01560	0.29	+2.4
1,714,925	-		MIT1002_01560	0.40	+3.6
1,714,955	-		MIT1002_01560	0.43	+0.6
1,714,982	-		MIT1002_01560	0.45	-1.3
1,714,990	+		MIT1002_01560	0.46	-0.7
1,714,990	+		MIT1002_01560	0.46	-2.3
1,714,990	+		MIT1002_01560	0.46	+1.2
1,714,990	+		MIT1002_01560	0.46	+1.9
1,714,990	+		MIT1002_01560	0.46	+2.0
1,714,998	-		MIT1002_01560	0.47	-0.1
1,715,038	+		MIT1002_01560	0.51	-1.3
1,715,040	+		MIT1002_01560	0.51	+0.3
1,715,076	+		MIT1002_01560	0.55	+0.2
1,715,208	+		MIT1002_01560	0.68	+1.7
1,715,230	-		MIT1002_01560	0.70	+1.8
1,715,237	+		MIT1002_01560	0.70	-0.4
1,715,240	-		MIT1002_01560	0.71	+0.1
1,715,242	+		MIT1002_01560	0.71	-0.9
1,715,293	+		MIT1002_01560	0.76	-1.3
1,715,293	+		MIT1002_01560	0.76	-0.4
1,715,293	+		MIT1002_01560	0.76	-1.2
1,715,301	-		MIT1002_01560	0.77	+0.3