Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_01272 and MIT1002_01273 overlap by 1 nucleotides MIT1002_01273 and MIT1002_01274 overlap by 1 nucleotides MIT1002_01274 and MIT1002_01275 are separated by 265 nucleotides
MIT1002_01272: MIT1002_01272 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 1,402,592 to 1,403,383
_01272
MIT1002_01273: MIT1002_01273 - Adenylyl-sulfate kinase, at 1,403,383 to 1,403,979
_01273
MIT1002_01274: MIT1002_01274 - Sulfate adenylyltransferase subunit 2, at 1,403,979 to 1,404,893
_01274
MIT1002_01275: MIT1002_01275 - Proline permease, at 1,405,159 to 1,406,664
_01275
Position (kb) 1403
1404
1405 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 1405.102 kb on + strand at 1405.344 kb on - strand, within MIT1002_01275 at 1405.352 kb on - strand, within MIT1002_01275 at 1405.369 kb on + strand, within MIT1002_01275 at 1405.369 kb on + strand, within MIT1002_01275 at 1405.369 kb on + strand, within MIT1002_01275 at 1405.377 kb on - strand, within MIT1002_01275 at 1405.377 kb on - strand, within MIT1002_01275 at 1405.397 kb on + strand, within MIT1002_01275 at 1405.405 kb on - strand, within MIT1002_01275 at 1405.422 kb on - strand, within MIT1002_01275 at 1405.425 kb on + strand, within MIT1002_01275 at 1405.433 kb on - strand, within MIT1002_01275 at 1405.446 kb on - strand, within MIT1002_01275 at 1405.524 kb on + strand, within MIT1002_01275 at 1405.524 kb on + strand, within MIT1002_01275 at 1405.529 kb on + strand, within MIT1002_01275 at 1405.569 kb on - strand, within MIT1002_01275 at 1405.627 kb on - strand, within MIT1002_01275 at 1405.638 kb on + strand, within MIT1002_01275 at 1405.646 kb on - strand, within MIT1002_01275 at 1405.699 kb on + strand, within MIT1002_01275 at 1405.817 kb on + strand, within MIT1002_01275 at 1405.852 kb on + strand, within MIT1002_01275 at 1405.855 kb on - strand, within MIT1002_01275 at 1405.860 kb on - strand, within MIT1002_01275 at 1405.860 kb on - strand, within MIT1002_01275
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5 remove 1,405,102 + +1.4 1,405,344 - MIT1002_01275 0.12 -1.6 1,405,352 - MIT1002_01275 0.13 +0.2 1,405,369 + MIT1002_01275 0.14 +1.8 1,405,369 + MIT1002_01275 0.14 +2.4 1,405,369 + MIT1002_01275 0.14 +0.6 1,405,377 - MIT1002_01275 0.14 -1.2 1,405,377 - MIT1002_01275 0.14 +1.7 1,405,397 + MIT1002_01275 0.16 -1.6 1,405,405 - MIT1002_01275 0.16 -0.4 1,405,422 - MIT1002_01275 0.17 +2.4 1,405,425 + MIT1002_01275 0.18 +0.9 1,405,433 - MIT1002_01275 0.18 +1.1 1,405,446 - MIT1002_01275 0.19 +1.4 1,405,524 + MIT1002_01275 0.24 -0.9 1,405,524 + MIT1002_01275 0.24 -0.2 1,405,529 + MIT1002_01275 0.25 +0.6 1,405,569 - MIT1002_01275 0.27 +0.9 1,405,627 - MIT1002_01275 0.31 -0.9 1,405,638 + MIT1002_01275 0.32 -1.7 1,405,646 - MIT1002_01275 0.32 +0.9 1,405,699 + MIT1002_01275 0.36 +0.6 1,405,817 + MIT1002_01275 0.44 +0.8 1,405,852 + MIT1002_01275 0.46 +4.7 1,405,855 - MIT1002_01275 0.46 +0.2 1,405,860 - MIT1002_01275 0.47 -0.8 1,405,860 - MIT1002_01275 0.47 -1.3
Or see this region's nucleotide sequence