Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00934

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5
1,033,908	-		MIT1002_00933	0.21	-0.4
1,033,929	+		MIT1002_00933	0.24	-3.9
1,033,984	+		MIT1002_00933	0.32	-1.1
1,034,185	+		MIT1002_00933	0.60	-5.0
1,034,208	-		MIT1002_00933	0.63	-2.2
1,034,208	-		MIT1002_00933	0.63	-3.1
1,034,254	-		MIT1002_00933	0.70	-2.2
1,034,269	-		MIT1002_00933	0.72	-0.8
1,034,309	+		MIT1002_00933	0.78	-2.7
1,034,316	+		MIT1002_00933	0.79	-1.5
1,034,316	+		MIT1002_00933	0.79	-1.9
1,034,334	-		MIT1002_00933	0.81	-2.6
1,034,353	+		MIT1002_00933	0.84	-1.7
1,034,353	+		MIT1002_00933	0.84	-2.7
1,034,397	+				-1.2
1,034,397	+				-1.9
1,034,397	+				-0.0
1,034,397	+				-1.9
1,034,397	+				-2.2
1,034,397	+				+0.1
1,034,397	+				-0.8
1,034,397	+				+0.9
1,034,404	-				-1.8
1,034,405	-				+1.5
1,034,405	-				-0.0
1,034,405	-				-0.7
1,034,405	-				-2.6
1,034,497	-				-1.9
1,034,507	+				-0.5
1,034,507	+				-2.4
1,034,517	+				-0.5
1,034,525	-				-0.8
1,034,715	-				+1.1
1,034,719	+				-1.6
1,034,897	+				+1.1
1,034,905	-				+0.2
1,034,905	-				-0.5
1,035,024	+		MIT1002_00934	0.19	-1.6
1,035,123	-		MIT1002_00934	0.29	-0.1
1,035,275	+		MIT1002_00934	0.44	-0.8
1,035,300	-		MIT1002_00934	0.47	-1.5
1,035,309	+		MIT1002_00934	0.48	-0.8
1,035,326	-		MIT1002_00934	0.49	-2.1
1,035,387	-		MIT1002_00934	0.56	-1.0
1,035,397	-		MIT1002_00934	0.57	+1.9
1,035,443	-		MIT1002_00934	0.61	-0.1
1,035,443	-		MIT1002_00934	0.61	+0.3
1,035,455	-		MIT1002_00934	0.62	-0.0
1,035,472	-		MIT1002_00934	0.64	+0.5
1,035,474	+		MIT1002_00934	0.64	-2.9
1,035,474	+		MIT1002_00934	0.64	-0.1
1,035,529	-		MIT1002_00934	0.70	-0.2
1,035,532	+		MIT1002_00934	0.70	+1.3
1,035,547	+		MIT1002_00934	0.72	+1.5
1,035,582	+		MIT1002_00934	0.75	+1.1
1,035,588	-		MIT1002_00934	0.76	-0.1
1,035,590	-		MIT1002_00934	0.76	+0.4
1,035,598	-		MIT1002_00934	0.77	+0.0
1,035,634	-		MIT1002_00934	0.80	+0.0
1,035,639	-		MIT1002_00934	0.81	-2.3
1,035,641	-		MIT1002_00934	0.81	-3.0
1,035,644	+		MIT1002_00934	0.81	-1.6
1,035,653	-		MIT1002_00934	0.82	-1.0
1,035,738	+				+0.4
1,035,743	+				-0.4
1,035,766	+				+1.7
1,035,845	-				-0.1
1,035,887	+		MIT1002_00935	0.11	-1.8
1,035,907	+		MIT1002_00935	0.15	+0.7
1,035,944	+		MIT1002_00935	0.22	+0.6
1,036,044	+		MIT1002_00935	0.42	+0.5
1,036,077	+		MIT1002_00935	0.48	-0.1
1,036,085	+		MIT1002_00935	0.50	+1.6
1,036,163	+		MIT1002_00935	0.65	-1.4
1,036,194	+		MIT1002_00935	0.71	+0.1
1,036,246	-		MIT1002_00935	0.81	-0.6
1,036,250	+		MIT1002_00935	0.82	-0.0
1,036,250	+		MIT1002_00935	0.82	+0.3
1,036,282	-		MIT1002_00935	0.88	-1.9
1,036,342	+				+0.8
1,036,347	+				-0.0
1,036,357	-				+0.9
1,036,371	-				-2.2
1,036,383	+				+0.5
1,036,383	+				-0.7
1,036,416	+				-1.3
1,036,416	+				-2.0
1,036,416	+				-0.1
1,036,424	-				-1.8
1,036,424	-				-0.6
1,036,424	-				-0.1
1,036,424	-				+0.6
1,036,508	+				+0.5
1,036,516	-				+0.5
1,036,516	-				-0.5
1,036,545	+				+1.3
1,036,552	+				-0.1
1,036,583	-				-0.0
1,036,583	-				-0.8
1,036,583	-				+0.3
1,036,583	-				+1.3
1,036,633	+		MIT1002_00936	0.10	-0.8
1,036,645	+		MIT1002_00936	0.11	-0.1
1,036,653	-		MIT1002_00936	0.11	-0.5
1,036,653	-		MIT1002_00936	0.11	-1.9
1,036,653	-		MIT1002_00936	0.11	+0.6
1,036,672	-		MIT1002_00936	0.12	-0.4
1,036,679	-		MIT1002_00936	0.13	+1.6
1,036,701	-		MIT1002_00936	0.14	-0.5
1,036,727	+		MIT1002_00936	0.15	+0.7
1,036,735	+		MIT1002_00936	0.16	-0.4
1,036,787	-		MIT1002_00936	0.19	-0.8
1,036,800	-		MIT1002_00936	0.20	+0.3
1,036,804	-		MIT1002_00936	0.20	+0.7