Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00886 and MIT1002_00887 are separated by 24 nucleotides MIT1002_00887 and MIT1002_00888 are separated by 84 nucleotides MIT1002_00888 and MIT1002_00889 are separated by 138 nucleotides MIT1002_00889 and MIT1002_00890 are separated by 220 nucleotides
MIT1002_00886: MIT1002_00886 - hemolysin, at 977,521 to 978,195
_00886
MIT1002_00887: MIT1002_00887 - hypothetical protein, at 978,220 to 978,459
_00887
MIT1002_00888: MIT1002_00888 - Organic hydroperoxide resistance transcriptional regulator, at 978,544 to 978,987
_00888
MIT1002_00889: MIT1002_00889 - General stress protein 17o, at 979,126 to 979,554
_00889
MIT1002_00890: MIT1002_00890 - Aminopeptidase N, at 979,775 to 981,706
_00890
Position (kb) 978
979 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 977.639 kb on - strand, within MIT1002_00886 at 977.676 kb on - strand, within MIT1002_00886 at 977.686 kb on - strand, within MIT1002_00886 at 977.702 kb on + strand, within MIT1002_00886 at 977.707 kb on + strand, within MIT1002_00886 at 977.708 kb on + strand, within MIT1002_00886 at 977.713 kb on + strand, within MIT1002_00886 at 977.714 kb on - strand, within MIT1002_00886 at 977.770 kb on + strand, within MIT1002_00886 at 977.770 kb on + strand, within MIT1002_00886 at 977.770 kb on + strand, within MIT1002_00886 at 977.778 kb on - strand, within MIT1002_00886 at 977.840 kb on - strand, within MIT1002_00886 at 977.933 kb on + strand, within MIT1002_00886 at 977.994 kb on + strand, within MIT1002_00886 at 978.001 kb on + strand, within MIT1002_00886 at 978.084 kb on + strand, within MIT1002_00886 at 978.104 kb on - strand, within MIT1002_00886 at 978.104 kb on - strand, within MIT1002_00886 at 978.104 kb on - strand, within MIT1002_00886 at 978.123 kb on + strand, within MIT1002_00886 at 978.128 kb on + strand at 978.128 kb on + strand at 978.136 kb on - strand at 978.136 kb on - strand at 978.243 kb on + strand at 978.335 kb on - strand, within MIT1002_00887 at 978.512 kb on + strand at 978.512 kb on + strand at 978.519 kb on + strand at 978.520 kb on - strand at 978.520 kb on - strand at 978.527 kb on - strand at 978.547 kb on + strand at 978.615 kb on - strand, within MIT1002_00888 at 978.632 kb on + strand, within MIT1002_00888 at 978.661 kb on - strand, within MIT1002_00888 at 978.788 kb on + strand, within MIT1002_00888 at 978.796 kb on - strand, within MIT1002_00888 at 978.796 kb on - strand, within MIT1002_00888 at 978.804 kb on - strand, within MIT1002_00888 at 978.863 kb on - strand, within MIT1002_00888 at 978.914 kb on + strand, within MIT1002_00888 at 978.934 kb on - strand, within MIT1002_00888 at 978.991 kb on + strand at 978.999 kb on - strand at 978.999 kb on - strand at 978.999 kb on - strand at 979.109 kb on + strand at 979.117 kb on - strand at 979.127 kb on - strand at 979.154 kb on - strand at 979.217 kb on + strand, within MIT1002_00889 at 979.217 kb on + strand, within MIT1002_00889 at 979.225 kb on - strand, within MIT1002_00889 at 979.235 kb on - strand, within MIT1002_00889 at 979.235 kb on - strand, within MIT1002_00889 at 979.328 kb on - strand, within MIT1002_00889 at 979.373 kb on - strand, within MIT1002_00889 at 979.402 kb on + strand, within MIT1002_00889 at 979.452 kb on + strand, within MIT1002_00889 at 979.465 kb on + strand, within MIT1002_00889 at 979.476 kb on + strand, within MIT1002_00889 at 979.545 kb on - strand at 979.598 kb on - strand at 979.637 kb on + strand at 979.637 kb on + strand at 979.640 kb on - strand at 979.645 kb on - strand at 979.653 kb on + strand at 979.661 kb on - strand at 979.698 kb on + strand at 979.709 kb on - strand at 979.835 kb on + strand at 979.843 kb on - strand at 979.843 kb on - strand at 979.905 kb on - strand at 979.911 kb on + strand at 979.962 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5 remove 977,639 - MIT1002_00886 0.17 +0.9 977,676 - MIT1002_00886 0.23 -1.4 977,686 - MIT1002_00886 0.24 -2.0 977,702 + MIT1002_00886 0.27 +0.2 977,707 + MIT1002_00886 0.28 +0.6 977,708 + MIT1002_00886 0.28 -2.5 977,713 + MIT1002_00886 0.28 +0.2 977,714 - MIT1002_00886 0.29 -1.0 977,770 + MIT1002_00886 0.37 +2.2 977,770 + MIT1002_00886 0.37 -0.1 977,770 + MIT1002_00886 0.37 +1.1 977,778 - MIT1002_00886 0.38 +2.2 977,840 - MIT1002_00886 0.47 -0.3 977,933 + MIT1002_00886 0.61 -0.4 977,994 + MIT1002_00886 0.70 +0.8 978,001 + MIT1002_00886 0.71 -0.6 978,084 + MIT1002_00886 0.83 -2.0 978,104 - MIT1002_00886 0.86 +3.4 978,104 - MIT1002_00886 0.86 +1.2 978,104 - MIT1002_00886 0.86 +1.0 978,123 + MIT1002_00886 0.89 -0.5 978,128 + -1.4 978,128 + -1.4 978,136 - +1.4 978,136 - -1.5 978,243 + -1.1 978,335 - MIT1002_00887 0.48 +0.7 978,512 + +1.1 978,512 + -1.8 978,519 + +2.5 978,520 - +2.3 978,520 - -0.2 978,527 - -1.0 978,547 + -0.3 978,615 - MIT1002_00888 0.16 -0.5 978,632 + MIT1002_00888 0.20 -1.1 978,661 - MIT1002_00888 0.26 -3.4 978,788 + MIT1002_00888 0.55 +0.3 978,796 - MIT1002_00888 0.57 -2.1 978,796 - MIT1002_00888 0.57 -1.0 978,804 - MIT1002_00888 0.59 -1.8 978,863 - MIT1002_00888 0.72 -3.6 978,914 + MIT1002_00888 0.83 +1.2 978,934 - MIT1002_00888 0.88 -2.5 978,991 + -1.2 978,999 - -0.1 978,999 - +1.8 978,999 - -0.0 979,109 + +0.1 979,117 - -1.2 979,127 - +0.4 979,154 - -0.3 979,217 + MIT1002_00889 0.21 +0.8 979,217 + MIT1002_00889 0.21 +0.5 979,225 - MIT1002_00889 0.23 +0.7 979,235 - MIT1002_00889 0.25 +1.2 979,235 - MIT1002_00889 0.25 -1.4 979,328 - MIT1002_00889 0.47 -0.8 979,373 - MIT1002_00889 0.58 -1.3 979,402 + MIT1002_00889 0.64 +0.5 979,452 + MIT1002_00889 0.76 +0.5 979,465 + MIT1002_00889 0.79 -2.6 979,476 + MIT1002_00889 0.82 +0.2 979,545 - -0.3 979,598 - +0.4 979,637 + +0.6 979,637 + +0.2 979,640 - +0.0 979,645 - -0.8 979,653 + -1.0 979,661 - -1.1 979,698 + +0.2 979,709 - +3.1 979,835 + -0.1 979,843 - -0.2 979,843 - +0.9 979,905 - +0.5 979,911 + +0.2 979,962 - -0.9
Or see this region's nucleotide sequence