Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00875 and MIT1002_00876 are separated by 15 nucleotides MIT1002_00876 and MIT1002_00877 are separated by 150 nucleotides
MIT1002_00875: MIT1002_00875 - Phosphate transport system permease protein PstA, at 967,164 to 968,723
_00875
MIT1002_00876: MIT1002_00876 - Phosphate import ATP-binding protein PstB 3, at 968,739 to 969,545
_00876
MIT1002_00877: MIT1002_00877 - Repressor protein PhoU, at 969,696 to 970,412
_00877
Position (kb) 968
969
970 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 967.791 kb on + strand, within MIT1002_00875 at 967.791 kb on + strand, within MIT1002_00875 at 967.939 kb on + strand, within MIT1002_00875 at 967.978 kb on - strand, within MIT1002_00875 at 967.982 kb on + strand, within MIT1002_00875 at 967.987 kb on + strand, within MIT1002_00875 at 967.995 kb on - strand, within MIT1002_00875 at 967.997 kb on - strand, within MIT1002_00875 at 968.012 kb on + strand, within MIT1002_00875 at 968.069 kb on + strand, within MIT1002_00875 at 968.087 kb on - strand, within MIT1002_00875 at 968.104 kb on + strand, within MIT1002_00875 at 968.128 kb on + strand, within MIT1002_00875 at 968.174 kb on - strand, within MIT1002_00875 at 968.244 kb on - strand, within MIT1002_00875 at 968.244 kb on - strand, within MIT1002_00875 at 968.256 kb on + strand, within MIT1002_00875 at 968.256 kb on + strand, within MIT1002_00875 at 968.256 kb on + strand, within MIT1002_00875 at 968.256 kb on + strand, within MIT1002_00875 at 968.264 kb on - strand, within MIT1002_00875 at 968.264 kb on - strand, within MIT1002_00875 at 968.264 kb on - strand, within MIT1002_00875 at 968.264 kb on - strand, within MIT1002_00875 at 968.264 kb on - strand, within MIT1002_00875 at 968.264 kb on - strand, within MIT1002_00875 at 968.264 kb on - strand, within MIT1002_00875 at 968.264 kb on - strand, within MIT1002_00875 at 968.264 kb on - strand, within MIT1002_00875 at 968.264 kb on - strand, within MIT1002_00875 at 968.264 kb on - strand, within MIT1002_00875 at 968.264 kb on - strand, within MIT1002_00875 at 968.312 kb on - strand, within MIT1002_00875 at 968.340 kb on - strand, within MIT1002_00875 at 968.557 kb on - strand, within MIT1002_00875 at 968.601 kb on + strand at 968.616 kb on + strand at 968.718 kb on + strand at 968.718 kb on + strand at 968.726 kb on - strand at 968.889 kb on + strand, within MIT1002_00876 at 968.925 kb on - strand, within MIT1002_00876 at 968.935 kb on - strand, within MIT1002_00876 at 969.076 kb on - strand, within MIT1002_00876 at 969.076 kb on - strand, within MIT1002_00876 at 969.120 kb on - strand, within MIT1002_00876 at 969.120 kb on - strand, within MIT1002_00876 at 969.121 kb on - strand, within MIT1002_00876 at 969.161 kb on + strand, within MIT1002_00876 at 969.177 kb on - strand, within MIT1002_00876 at 969.198 kb on + strand, within MIT1002_00876 at 969.243 kb on + strand, within MIT1002_00876 at 969.319 kb on - strand, within MIT1002_00876 at 969.328 kb on - strand, within MIT1002_00876 at 969.334 kb on - strand, within MIT1002_00876 at 969.421 kb on + strand, within MIT1002_00876 at 969.452 kb on + strand, within MIT1002_00876 at 969.521 kb on + strand at 969.551 kb on - strand at 969.605 kb on + strand at 969.665 kb on + strand at 969.708 kb on + strand at 969.708 kb on + strand at 969.776 kb on - strand, within MIT1002_00877 at 969.866 kb on - strand, within MIT1002_00877 at 969.961 kb on - strand, within MIT1002_00877 at 970.014 kb on - strand, within MIT1002_00877 at 970.112 kb on - strand, within MIT1002_00877 at 970.150 kb on - strand, within MIT1002_00877 at 970.150 kb on - strand, within MIT1002_00877 at 970.211 kb on + strand, within MIT1002_00877 at 970.211 kb on + strand, within MIT1002_00877 at 970.211 kb on + strand, within MIT1002_00877 at 970.211 kb on + strand, within MIT1002_00877 at 970.271 kb on + strand, within MIT1002_00877 at 970.288 kb on + strand, within MIT1002_00877 at 970.351 kb on + strand at 970.359 kb on - strand at 970.363 kb on + strand at 970.371 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5 remove 967,791 + MIT1002_00875 0.40 -0.9 967,791 + MIT1002_00875 0.40 +2.1 967,939 + MIT1002_00875 0.50 -1.0 967,978 - MIT1002_00875 0.52 -1.6 967,982 + MIT1002_00875 0.52 +2.8 967,987 + MIT1002_00875 0.53 +0.9 967,995 - MIT1002_00875 0.53 +1.9 967,997 - MIT1002_00875 0.53 +0.9 968,012 + MIT1002_00875 0.54 -0.3 968,069 + MIT1002_00875 0.58 -2.0 968,087 - MIT1002_00875 0.59 -1.0 968,104 + MIT1002_00875 0.60 -1.4 968,128 + MIT1002_00875 0.62 +1.2 968,174 - MIT1002_00875 0.65 -1.8 968,244 - MIT1002_00875 0.69 -1.2 968,244 - MIT1002_00875 0.69 -1.1 968,256 + MIT1002_00875 0.70 -2.3 968,256 + MIT1002_00875 0.70 -1.0 968,256 + MIT1002_00875 0.70 +1.5 968,256 + MIT1002_00875 0.70 +0.1 968,264 - MIT1002_00875 0.71 -0.3 968,264 - MIT1002_00875 0.71 +0.2 968,264 - MIT1002_00875 0.71 +3.2 968,264 - MIT1002_00875 0.71 +0.7 968,264 - MIT1002_00875 0.71 -0.7 968,264 - MIT1002_00875 0.71 -2.7 968,264 - MIT1002_00875 0.71 +0.7 968,264 - MIT1002_00875 0.71 +0.9 968,264 - MIT1002_00875 0.71 +0.6 968,264 - MIT1002_00875 0.71 -1.4 968,264 - MIT1002_00875 0.71 -0.2 968,264 - MIT1002_00875 0.71 -3.5 968,312 - MIT1002_00875 0.74 -3.2 968,340 - MIT1002_00875 0.75 -1.7 968,557 - MIT1002_00875 0.89 -1.5 968,601 + +0.2 968,616 + -0.9 968,718 + -1.0 968,718 + -0.4 968,726 - -1.7 968,889 + MIT1002_00876 0.19 -0.7 968,925 - MIT1002_00876 0.23 +0.5 968,935 - MIT1002_00876 0.24 -1.4 969,076 - MIT1002_00876 0.42 -0.8 969,076 - MIT1002_00876 0.42 -2.3 969,120 - MIT1002_00876 0.47 -1.8 969,120 - MIT1002_00876 0.47 -0.3 969,121 - MIT1002_00876 0.47 +1.2 969,161 + MIT1002_00876 0.52 -1.4 969,177 - MIT1002_00876 0.54 -1.5 969,198 + MIT1002_00876 0.57 +0.4 969,243 + MIT1002_00876 0.62 -0.5 969,319 - MIT1002_00876 0.72 -2.8 969,328 - MIT1002_00876 0.73 -2.3 969,334 - MIT1002_00876 0.74 +1.5 969,421 + MIT1002_00876 0.85 -2.8 969,452 + MIT1002_00876 0.88 -0.1 969,521 + -1.1 969,551 - -0.4 969,605 + +0.5 969,665 + -1.1 969,708 + +0.8 969,708 + -4.7 969,776 - MIT1002_00877 0.11 -1.1 969,866 - MIT1002_00877 0.24 +0.9 969,961 - MIT1002_00877 0.37 -0.3 970,014 - MIT1002_00877 0.44 +0.0 970,112 - MIT1002_00877 0.58 +0.4 970,150 - MIT1002_00877 0.63 -0.6 970,150 - MIT1002_00877 0.63 -0.6 970,211 + MIT1002_00877 0.72 -0.4 970,211 + MIT1002_00877 0.72 +1.2 970,211 + MIT1002_00877 0.72 -0.9 970,211 + MIT1002_00877 0.72 +0.7 970,271 + MIT1002_00877 0.80 -0.9 970,288 + MIT1002_00877 0.83 -4.7 970,351 + +1.0 970,359 - +0.7 970,363 + +1.7 970,371 - -0.1
Or see this region's nucleotide sequence