Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00778 and MIT1002_00779 are separated by 282 nucleotides MIT1002_00779 and MIT1002_00780 are separated by 7 nucleotides MIT1002_00780 and MIT1002_00781 are separated by 7 nucleotides
MIT1002_00778: MIT1002_00778 - hypothetical protein, at 860,869 to 862,893
_00778
MIT1002_00779: MIT1002_00779 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical, at 863,176 to 864,003
_00779
MIT1002_00780: MIT1002_00780 - CO2+/MG2+ efflux protein ApaG, at 864,011 to 864,385
_00780
MIT1002_00781: MIT1002_00781 - Ribosomal RNA small subunit methyltransferase A, at 864,393 to 865,220
_00781
Position (kb) 863
864
865 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 862.291 kb on - strand, within MIT1002_00778 at 862.327 kb on + strand, within MIT1002_00778 at 862.365 kb on + strand, within MIT1002_00778 at 862.366 kb on - strand, within MIT1002_00778 at 862.373 kb on - strand, within MIT1002_00778 at 862.373 kb on - strand, within MIT1002_00778 at 862.395 kb on - strand, within MIT1002_00778 at 862.450 kb on - strand, within MIT1002_00778 at 862.450 kb on - strand, within MIT1002_00778 at 862.464 kb on - strand, within MIT1002_00778 at 862.466 kb on + strand, within MIT1002_00778 at 862.509 kb on + strand, within MIT1002_00778 at 862.548 kb on - strand, within MIT1002_00778 at 862.564 kb on + strand, within MIT1002_00778 at 862.572 kb on - strand, within MIT1002_00778 at 862.622 kb on - strand, within MIT1002_00778 at 862.632 kb on - strand, within MIT1002_00778 at 862.666 kb on + strand, within MIT1002_00778 at 862.674 kb on - strand, within MIT1002_00778 at 862.761 kb on - strand at 862.761 kb on - strand at 862.821 kb on + strand at 862.831 kb on + strand at 862.943 kb on - strand at 863.080 kb on - strand at 863.230 kb on - strand at 863.230 kb on - strand at 863.304 kb on + strand, within MIT1002_00779 at 863.383 kb on + strand, within MIT1002_00779 at 863.383 kb on + strand, within MIT1002_00779 at 863.391 kb on - strand, within MIT1002_00779 at 863.391 kb on - strand, within MIT1002_00779 at 863.455 kb on + strand, within MIT1002_00779 at 863.469 kb on + strand, within MIT1002_00779 at 863.601 kb on - strand, within MIT1002_00779 at 863.649 kb on - strand, within MIT1002_00779 at 863.685 kb on + strand, within MIT1002_00779 at 863.685 kb on + strand, within MIT1002_00779 at 863.721 kb on - strand, within MIT1002_00779 at 863.728 kb on - strand, within MIT1002_00779 at 863.733 kb on + strand, within MIT1002_00779 at 863.813 kb on + strand, within MIT1002_00779 at 863.813 kb on + strand, within MIT1002_00779 at 863.821 kb on - strand, within MIT1002_00779 at 863.899 kb on - strand, within MIT1002_00779 at 863.940 kb on - strand at 863.975 kb on + strand at 864.077 kb on + strand, within MIT1002_00780 at 864.085 kb on + strand, within MIT1002_00780 at 864.085 kb on - strand, within MIT1002_00780 at 864.122 kb on + strand, within MIT1002_00780 at 864.122 kb on + strand, within MIT1002_00780 at 864.122 kb on + strand, within MIT1002_00780 at 864.130 kb on - strand, within MIT1002_00780 at 864.130 kb on - strand, within MIT1002_00780 at 864.167 kb on + strand, within MIT1002_00780 at 864.182 kb on + strand, within MIT1002_00780 at 864.182 kb on + strand, within MIT1002_00780 at 864.183 kb on + strand, within MIT1002_00780 at 864.262 kb on - strand, within MIT1002_00780 at 864.286 kb on + strand, within MIT1002_00780 at 864.359 kb on - strand at 864.364 kb on + strand at 864.372 kb on - strand at 864.372 kb on - strand at 864.396 kb on + strand at 864.435 kb on - strand at 864.769 kb on + strand, within MIT1002_00781 at 864.854 kb on - strand, within MIT1002_00781 at 864.944 kb on - strand, within MIT1002_00781
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5 remove 862,291 - MIT1002_00778 0.70 -1.5 862,327 + MIT1002_00778 0.72 +0.3 862,365 + MIT1002_00778 0.74 +1.6 862,366 - MIT1002_00778 0.74 -0.6 862,373 - MIT1002_00778 0.74 -0.2 862,373 - MIT1002_00778 0.74 -0.3 862,395 - MIT1002_00778 0.75 -0.3 862,450 - MIT1002_00778 0.78 +2.2 862,450 - MIT1002_00778 0.78 -0.9 862,464 - MIT1002_00778 0.79 -0.1 862,466 + MIT1002_00778 0.79 -1.8 862,509 + MIT1002_00778 0.81 -1.4 862,548 - MIT1002_00778 0.83 +1.6 862,564 + MIT1002_00778 0.84 -0.8 862,572 - MIT1002_00778 0.84 -0.3 862,622 - MIT1002_00778 0.87 -1.9 862,632 - MIT1002_00778 0.87 +1.4 862,666 + MIT1002_00778 0.89 +0.9 862,674 - MIT1002_00778 0.89 -0.2 862,761 - +0.9 862,761 - -2.2 862,821 + +1.5 862,831 + +0.7 862,943 - +0.5 863,080 - -0.6 863,230 - -0.1 863,230 - +1.2 863,304 + MIT1002_00779 0.15 -0.6 863,383 + MIT1002_00779 0.25 -0.1 863,383 + MIT1002_00779 0.25 -1.9 863,391 - MIT1002_00779 0.26 +1.0 863,391 - MIT1002_00779 0.26 -2.2 863,455 + MIT1002_00779 0.34 +1.1 863,469 + MIT1002_00779 0.35 -2.4 863,601 - MIT1002_00779 0.51 +2.5 863,649 - MIT1002_00779 0.57 -0.3 863,685 + MIT1002_00779 0.61 -1.5 863,685 + MIT1002_00779 0.61 -3.0 863,721 - MIT1002_00779 0.66 +0.0 863,728 - MIT1002_00779 0.67 +0.0 863,733 + MIT1002_00779 0.67 -0.6 863,813 + MIT1002_00779 0.77 -1.1 863,813 + MIT1002_00779 0.77 -0.1 863,821 - MIT1002_00779 0.78 +0.9 863,899 - MIT1002_00779 0.87 -0.2 863,940 - -0.3 863,975 + -0.4 864,077 + MIT1002_00780 0.18 +0.4 864,085 + MIT1002_00780 0.20 -0.3 864,085 - MIT1002_00780 0.20 -0.9 864,122 + MIT1002_00780 0.30 -0.4 864,122 + MIT1002_00780 0.30 -0.2 864,122 + MIT1002_00780 0.30 -0.4 864,130 - MIT1002_00780 0.32 -2.0 864,130 - MIT1002_00780 0.32 +1.7 864,167 + MIT1002_00780 0.42 -1.0 864,182 + MIT1002_00780 0.46 -1.3 864,182 + MIT1002_00780 0.46 -0.1 864,183 + MIT1002_00780 0.46 +1.2 864,262 - MIT1002_00780 0.67 -0.2 864,286 + MIT1002_00780 0.73 +0.7 864,359 - -0.1 864,364 + -1.6 864,372 - +1.2 864,372 - -0.5 864,396 + +0.3 864,435 - -0.4 864,769 + MIT1002_00781 0.45 -1.0 864,854 - MIT1002_00781 0.56 +1.5 864,944 - MIT1002_00781 0.67 -0.6
Or see this region's nucleotide sequence