Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00773 and MIT1002_00774 are separated by 360 nucleotides MIT1002_00774 and MIT1002_00775 are separated by 72 nucleotides MIT1002_00775 and MIT1002_00776 are separated by 60 nucleotides
MIT1002_00773: MIT1002_00773 - DNA ligase, at 854,136 to 855,089
_00773
MIT1002_00774: MIT1002_00774 - Aconitate hydratase 2, at 855,450 to 858,062
_00774
MIT1002_00775: MIT1002_00775 - hypothetical protein, at 858,135 to 858,584
_00775
MIT1002_00776: MIT1002_00776 - Lysine-sensitive aspartokinase 3, at 858,645 to 859,994
_00776
Position (kb) 855
856
857
858
859 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 854.459 kb on + strand, within MIT1002_00773 at 854.531 kb on + strand, within MIT1002_00773 at 854.610 kb on + strand, within MIT1002_00773 at 854.631 kb on + strand, within MIT1002_00773 at 854.639 kb on + strand, within MIT1002_00773 at 854.680 kb on + strand, within MIT1002_00773 at 854.768 kb on - strand, within MIT1002_00773 at 854.769 kb on - strand, within MIT1002_00773 at 854.789 kb on + strand, within MIT1002_00773 at 854.789 kb on + strand, within MIT1002_00773 at 854.789 kb on + strand, within MIT1002_00773 at 854.795 kb on - strand, within MIT1002_00773 at 854.797 kb on - strand, within MIT1002_00773 at 854.816 kb on + strand, within MIT1002_00773 at 854.823 kb on + strand, within MIT1002_00773 at 855.001 kb on + strand at 855.001 kb on + strand at 855.001 kb on + strand at 855.001 kb on + strand at 855.001 kb on + strand at 855.009 kb on - strand at 855.009 kb on - strand at 855.049 kb on - strand at 855.056 kb on - strand at 855.058 kb on + strand at 855.059 kb on + strand at 855.067 kb on - strand at 855.083 kb on - strand at 855.132 kb on - strand at 855.174 kb on + strand at 855.400 kb on + strand at 855.428 kb on + strand at 855.512 kb on + strand at 855.567 kb on + strand at 855.670 kb on + strand at 855.677 kb on - strand at 855.679 kb on + strand at 855.706 kb on + strand at 855.735 kb on + strand, within MIT1002_00774 at 855.735 kb on + strand, within MIT1002_00774 at 855.735 kb on + strand, within MIT1002_00774 at 855.743 kb on - strand, within MIT1002_00774 at 855.765 kb on + strand, within MIT1002_00774 at 855.839 kb on - strand, within MIT1002_00774 at 855.980 kb on - strand, within MIT1002_00774 at 856.011 kb on - strand, within MIT1002_00774 at 856.071 kb on + strand, within MIT1002_00774 at 856.087 kb on + strand, within MIT1002_00774 at 856.103 kb on - strand, within MIT1002_00774 at 856.139 kb on + strand, within MIT1002_00774 at 856.144 kb on - strand, within MIT1002_00774 at 856.151 kb on - strand, within MIT1002_00774 at 856.263 kb on + strand, within MIT1002_00774 at 856.320 kb on + strand, within MIT1002_00774 at 856.328 kb on - strand, within MIT1002_00774 at 856.373 kb on - strand, within MIT1002_00774 at 856.435 kb on + strand, within MIT1002_00774 at 856.441 kb on + strand, within MIT1002_00774 at 856.450 kb on - strand, within MIT1002_00774 at 856.484 kb on - strand, within MIT1002_00774 at 856.556 kb on - strand, within MIT1002_00774 at 856.622 kb on + strand, within MIT1002_00774 at 856.639 kb on + strand, within MIT1002_00774 at 856.665 kb on + strand, within MIT1002_00774 at 856.677 kb on + strand, within MIT1002_00774 at 856.691 kb on + strand, within MIT1002_00774 at 856.699 kb on - strand, within MIT1002_00774 at 856.701 kb on + strand, within MIT1002_00774 at 856.736 kb on - strand, within MIT1002_00774 at 856.736 kb on - strand, within MIT1002_00774 at 856.738 kb on + strand, within MIT1002_00774 at 856.745 kb on - strand, within MIT1002_00774 at 856.867 kb on + strand, within MIT1002_00774 at 856.887 kb on - strand, within MIT1002_00774 at 856.892 kb on - strand, within MIT1002_00774 at 856.894 kb on + strand, within MIT1002_00774 at 856.902 kb on - strand, within MIT1002_00774 at 856.989 kb on - strand, within MIT1002_00774 at 857.027 kb on + strand, within MIT1002_00774 at 857.035 kb on - strand, within MIT1002_00774 at 857.051 kb on - strand, within MIT1002_00774 at 857.077 kb on + strand, within MIT1002_00774 at 857.085 kb on - strand, within MIT1002_00774 at 857.096 kb on + strand, within MIT1002_00774 at 857.100 kb on - strand, within MIT1002_00774 at 857.100 kb on - strand, within MIT1002_00774 at 857.105 kb on - strand, within MIT1002_00774 at 857.132 kb on + strand, within MIT1002_00774 at 857.135 kb on + strand, within MIT1002_00774 at 857.260 kb on - strand, within MIT1002_00774 at 857.328 kb on - strand, within MIT1002_00774 at 857.349 kb on + strand, within MIT1002_00774 at 857.368 kb on + strand, within MIT1002_00774 at 857.368 kb on + strand, within MIT1002_00774 at 857.376 kb on - strand, within MIT1002_00774 at 857.376 kb on - strand, within MIT1002_00774 at 857.376 kb on - strand, within MIT1002_00774 at 857.376 kb on - strand, within MIT1002_00774 at 857.376 kb on - strand, within MIT1002_00774 at 857.415 kb on + strand, within MIT1002_00774 at 857.415 kb on + strand, within MIT1002_00774 at 857.417 kb on + strand, within MIT1002_00774 at 857.423 kb on - strand, within MIT1002_00774 at 857.484 kb on - strand, within MIT1002_00774 at 857.490 kb on + strand, within MIT1002_00774 at 857.493 kb on - strand, within MIT1002_00774 at 857.500 kb on + strand, within MIT1002_00774 at 857.508 kb on - strand, within MIT1002_00774 at 857.508 kb on - strand, within MIT1002_00774 at 857.538 kb on - strand, within MIT1002_00774 at 857.617 kb on - strand, within MIT1002_00774 at 857.625 kb on - strand, within MIT1002_00774 at 857.635 kb on - strand, within MIT1002_00774 at 857.659 kb on + strand, within MIT1002_00774 at 857.725 kb on + strand, within MIT1002_00774 at 857.762 kb on + strand, within MIT1002_00774 at 857.782 kb on + strand, within MIT1002_00774 at 857.800 kb on - strand, within MIT1002_00774 at 857.916 kb on + strand at 857.916 kb on + strand at 857.922 kb on - strand at 857.922 kb on - strand at 858.011 kb on + strand at 858.057 kb on + strand at 858.091 kb on + strand at 858.091 kb on + strand at 858.091 kb on + strand at 858.091 kb on + strand at 858.091 kb on + strand at 858.099 kb on - strand at 858.099 kb on - strand at 858.099 kb on - strand at 858.099 kb on - strand at 858.168 kb on + strand at 858.174 kb on + strand at 858.174 kb on + strand at 858.174 kb on + strand at 858.174 kb on + strand at 858.174 kb on + strand at 858.174 kb on + strand at 858.174 kb on + strand at 858.174 kb on + strand at 858.182 kb on - strand, within MIT1002_00775 at 858.182 kb on - strand, within MIT1002_00775 at 858.182 kb on - strand, within MIT1002_00775 at 858.182 kb on - strand, within MIT1002_00775 at 858.182 kb on - strand, within MIT1002_00775 at 858.182 kb on - strand, within MIT1002_00775 at 858.182 kb on - strand, within MIT1002_00775 at 858.182 kb on - strand, within MIT1002_00775 at 858.182 kb on - strand, within MIT1002_00775 at 858.182 kb on - strand, within MIT1002_00775 at 858.289 kb on + strand, within MIT1002_00775 at 858.289 kb on + strand, within MIT1002_00775 at 858.297 kb on - strand, within MIT1002_00775 at 858.297 kb on - strand, within MIT1002_00775 at 858.297 kb on - strand, within MIT1002_00775 at 858.297 kb on - strand, within MIT1002_00775 at 858.297 kb on - strand, within MIT1002_00775 at 858.310 kb on + strand, within MIT1002_00775 at 858.310 kb on + strand, within MIT1002_00775 at 858.318 kb on - strand, within MIT1002_00775 at 858.339 kb on - strand, within MIT1002_00775 at 858.374 kb on + strand, within MIT1002_00775 at 858.475 kb on + strand, within MIT1002_00775 at 858.475 kb on + strand, within MIT1002_00775 at 858.475 kb on + strand, within MIT1002_00775 at 858.483 kb on - strand, within MIT1002_00775 at 858.483 kb on - strand, within MIT1002_00775 at 858.524 kb on - strand, within MIT1002_00775 at 858.705 kb on + strand at 858.751 kb on + strand at 858.758 kb on + strand at 858.761 kb on - strand at 858.782 kb on - strand, within MIT1002_00776 at 858.816 kb on - strand, within MIT1002_00776 at 858.816 kb on - strand, within MIT1002_00776 at 858.992 kb on + strand, within MIT1002_00776 at 859.007 kb on + strand, within MIT1002_00776 at 859.017 kb on + strand, within MIT1002_00776 at 859.025 kb on + strand, within MIT1002_00776 at 859.030 kb on + strand, within MIT1002_00776
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5 remove 854,459 + MIT1002_00773 0.34 -0.5 854,531 + MIT1002_00773 0.41 +1.4 854,610 + MIT1002_00773 0.50 +1.0 854,631 + MIT1002_00773 0.52 +0.3 854,639 + MIT1002_00773 0.53 +1.5 854,680 + MIT1002_00773 0.57 +0.9 854,768 - MIT1002_00773 0.66 +0.0 854,769 - MIT1002_00773 0.66 +1.6 854,789 + MIT1002_00773 0.68 -0.8 854,789 + MIT1002_00773 0.68 -0.5 854,789 + MIT1002_00773 0.68 +0.3 854,795 - MIT1002_00773 0.69 +0.2 854,797 - MIT1002_00773 0.69 -0.1 854,816 + MIT1002_00773 0.71 +0.5 854,823 + MIT1002_00773 0.72 -0.6 855,001 + -0.8 855,001 + -2.1 855,001 + -0.5 855,001 + -0.1 855,001 + -2.5 855,009 - +1.0 855,009 - +0.3 855,049 - -0.3 855,056 - -1.6 855,058 + +0.9 855,059 + +1.0 855,067 - +0.8 855,083 - +0.0 855,132 - -0.4 855,174 + +1.7 855,400 + +0.0 855,428 + +0.2 855,512 + +1.7 855,567 + +2.1 855,670 + +1.9 855,677 - -1.1 855,679 + +2.3 855,706 + +0.0 855,735 + MIT1002_00774 0.11 -0.5 855,735 + MIT1002_00774 0.11 +0.9 855,735 + MIT1002_00774 0.11 -0.9 855,743 - MIT1002_00774 0.11 +0.6 855,765 + MIT1002_00774 0.12 +1.2 855,839 - MIT1002_00774 0.15 -0.2 855,980 - MIT1002_00774 0.20 -0.3 856,011 - MIT1002_00774 0.21 +0.1 856,071 + MIT1002_00774 0.24 -0.9 856,087 + MIT1002_00774 0.24 +1.6 856,103 - MIT1002_00774 0.25 +0.9 856,139 + MIT1002_00774 0.26 -0.5 856,144 - MIT1002_00774 0.27 +0.1 856,151 - MIT1002_00774 0.27 -0.4 856,263 + MIT1002_00774 0.31 +0.4 856,320 + MIT1002_00774 0.33 -0.1 856,328 - MIT1002_00774 0.34 -1.6 856,373 - MIT1002_00774 0.35 +0.3 856,435 + MIT1002_00774 0.38 +1.4 856,441 + MIT1002_00774 0.38 +0.9 856,450 - MIT1002_00774 0.38 +0.1 856,484 - MIT1002_00774 0.40 -4.4 856,556 - MIT1002_00774 0.42 +0.0 856,622 + MIT1002_00774 0.45 -0.1 856,639 + MIT1002_00774 0.46 -3.1 856,665 + MIT1002_00774 0.46 -0.6 856,677 + MIT1002_00774 0.47 -0.8 856,691 + MIT1002_00774 0.47 -0.1 856,699 - MIT1002_00774 0.48 +0.4 856,701 + MIT1002_00774 0.48 -3.2 856,736 - MIT1002_00774 0.49 -0.7 856,736 - MIT1002_00774 0.49 -0.7 856,738 + MIT1002_00774 0.49 +0.4 856,745 - MIT1002_00774 0.50 -0.8 856,867 + MIT1002_00774 0.54 +0.3 856,887 - MIT1002_00774 0.55 +0.6 856,892 - MIT1002_00774 0.55 +0.3 856,894 + MIT1002_00774 0.55 +0.2 856,902 - MIT1002_00774 0.56 -2.1 856,989 - MIT1002_00774 0.59 -0.6 857,027 + MIT1002_00774 0.60 +0.2 857,035 - MIT1002_00774 0.61 -0.3 857,051 - MIT1002_00774 0.61 -0.1 857,077 + MIT1002_00774 0.62 +2.5 857,085 - MIT1002_00774 0.63 -2.1 857,096 + MIT1002_00774 0.63 +0.9 857,100 - MIT1002_00774 0.63 +0.5 857,100 - MIT1002_00774 0.63 -1.1 857,105 - MIT1002_00774 0.63 +0.3 857,132 + MIT1002_00774 0.64 -0.3 857,135 + MIT1002_00774 0.64 -0.9 857,260 - MIT1002_00774 0.69 -0.8 857,328 - MIT1002_00774 0.72 +2.1 857,349 + MIT1002_00774 0.73 -0.7 857,368 + MIT1002_00774 0.73 +0.3 857,368 + MIT1002_00774 0.73 +0.6 857,376 - MIT1002_00774 0.74 +0.8 857,376 - MIT1002_00774 0.74 +0.2 857,376 - MIT1002_00774 0.74 -0.2 857,376 - MIT1002_00774 0.74 +0.7 857,376 - MIT1002_00774 0.74 +0.1 857,415 + MIT1002_00774 0.75 +0.4 857,415 + MIT1002_00774 0.75 +0.1 857,417 + MIT1002_00774 0.75 -0.4 857,423 - MIT1002_00774 0.76 +0.7 857,484 - MIT1002_00774 0.78 -0.8 857,490 + MIT1002_00774 0.78 +2.2 857,493 - MIT1002_00774 0.78 +0.5 857,500 + MIT1002_00774 0.78 -0.3 857,508 - MIT1002_00774 0.79 -1.0 857,508 - MIT1002_00774 0.79 -2.1 857,538 - MIT1002_00774 0.80 -2.1 857,617 - MIT1002_00774 0.83 +0.2 857,625 - MIT1002_00774 0.83 +1.2 857,635 - MIT1002_00774 0.84 -0.9 857,659 + MIT1002_00774 0.85 -1.8 857,725 + MIT1002_00774 0.87 -0.6 857,762 + MIT1002_00774 0.88 -0.1 857,782 + MIT1002_00774 0.89 +0.6 857,800 - MIT1002_00774 0.90 -0.7 857,916 + +1.5 857,916 + -0.7 857,922 - -1.2 857,922 - +0.2 858,011 + +0.6 858,057 + +0.8 858,091 + +1.2 858,091 + -0.3 858,091 + -2.4 858,091 + +0.2 858,091 + -1.7 858,099 - +0.2 858,099 - -1.1 858,099 - -0.9 858,099 - -2.0 858,168 + +0.1 858,174 + -0.1 858,174 + -0.4 858,174 + -0.8 858,174 + +0.9 858,174 + -0.4 858,174 + -0.5 858,174 + -1.7 858,174 + +0.3 858,182 - MIT1002_00775 0.10 -1.0 858,182 - MIT1002_00775 0.10 -0.4 858,182 - MIT1002_00775 0.10 -0.1 858,182 - MIT1002_00775 0.10 -2.5 858,182 - MIT1002_00775 0.10 -0.7 858,182 - MIT1002_00775 0.10 +1.9 858,182 - MIT1002_00775 0.10 -0.3 858,182 - MIT1002_00775 0.10 -1.6 858,182 - MIT1002_00775 0.10 +1.2 858,182 - MIT1002_00775 0.10 +0.9 858,289 + MIT1002_00775 0.34 -1.3 858,289 + MIT1002_00775 0.34 +0.1 858,297 - MIT1002_00775 0.36 -0.3 858,297 - MIT1002_00775 0.36 -2.7 858,297 - MIT1002_00775 0.36 +1.5 858,297 - MIT1002_00775 0.36 +0.3 858,297 - MIT1002_00775 0.36 +0.2 858,310 + MIT1002_00775 0.39 -0.5 858,310 + MIT1002_00775 0.39 -0.8 858,318 - MIT1002_00775 0.41 -1.9 858,339 - MIT1002_00775 0.45 -0.9 858,374 + MIT1002_00775 0.53 +1.1 858,475 + MIT1002_00775 0.76 +1.4 858,475 + MIT1002_00775 0.76 +0.8 858,475 + MIT1002_00775 0.76 +0.4 858,483 - MIT1002_00775 0.77 -0.9 858,483 - MIT1002_00775 0.77 +0.6 858,524 - MIT1002_00775 0.86 -0.6 858,705 + -0.1 858,751 + +1.7 858,758 + +0.9 858,761 - +0.7 858,782 - MIT1002_00776 0.10 -1.7 858,816 - MIT1002_00776 0.13 -1.8 858,816 - MIT1002_00776 0.13 -0.5 858,992 + MIT1002_00776 0.26 -0.7 859,007 + MIT1002_00776 0.27 -1.2 859,017 + MIT1002_00776 0.28 -0.0 859,025 + MIT1002_00776 0.28 -0.7 859,030 + MIT1002_00776 0.29 -1.5
Or see this region's nucleotide sequence