Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00764

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00763 and MIT1002_00764 overlap by 8 nucleotidesMIT1002_00764 and MIT1002_00765 are separated by 137 nucleotides MIT1002_00763: MIT1002_00763 - Cyclic di-GMP phosphodiesterase response regulator RpfG, at 838,556 to 839,656 _00763 MIT1002_00764: MIT1002_00764 - Signal transduction histidine-protein kinase BarA, at 839,649 to 842,276 _00764 MIT1002_00765: MIT1002_00765 - Long-chain-fatty-acid--CoA ligase, at 842,414 to 843,982 _00765 Position (kb) 839 840 841 842 843Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 838.705 kb on + strand, within MIT1002_00763at 838.705 kb on + strand, within MIT1002_00763at 838.707 kb on + strand, within MIT1002_00763at 838.713 kb on - strand, within MIT1002_00763at 838.713 kb on - strand, within MIT1002_00763at 838.713 kb on - strand, within MIT1002_00763at 838.838 kb on + strand, within MIT1002_00763at 838.883 kb on + strand, within MIT1002_00763at 838.891 kb on - strand, within MIT1002_00763at 838.936 kb on + strand, within MIT1002_00763at 838.958 kb on - strand, within MIT1002_00763at 838.980 kb on - strand, within MIT1002_00763at 838.983 kb on + strand, within MIT1002_00763at 839.056 kb on - strand, within MIT1002_00763at 839.056 kb on - strand, within MIT1002_00763at 839.088 kb on + strand, within MIT1002_00763at 839.096 kb on - strand, within MIT1002_00763at 839.096 kb on - strand, within MIT1002_00763at 839.102 kb on - strand, within MIT1002_00763at 839.159 kb on - strand, within MIT1002_00763at 839.243 kb on + strand, within MIT1002_00763at 839.243 kb on - strand, within MIT1002_00763at 839.251 kb on - strand, within MIT1002_00763at 839.251 kb on - strand, within MIT1002_00763at 839.299 kb on + strand, within MIT1002_00763at 839.299 kb on + strand, within MIT1002_00763at 839.309 kb on + strand, within MIT1002_00763at 839.345 kb on - strand, within MIT1002_00763at 839.379 kb on - strand, within MIT1002_00763at 839.386 kb on - strand, within MIT1002_00763at 839.386 kb on - strand, within MIT1002_00763at 839.386 kb on - strand, within MIT1002_00763at 839.412 kb on - strand, within MIT1002_00763at 839.412 kb on - strand, within MIT1002_00763at 839.423 kb on - strand, within MIT1002_00763at 839.446 kb on + strand, within MIT1002_00763at 839.446 kb on + strand, within MIT1002_00763at 839.454 kb on - strand, within MIT1002_00763at 839.454 kb on - strand, within MIT1002_00763at 839.454 kb on - strand, within MIT1002_00763at 839.454 kb on - strand, within MIT1002_00763at 839.454 kb on - strand, within MIT1002_00763at 839.529 kb on - strand, within MIT1002_00763at 839.546 kb on + strand, within MIT1002_00763at 839.554 kb on - strandat 839.716 kb on + strandat 839.764 kb on + strandat 839.798 kb on - strandat 839.828 kb on + strandat 839.828 kb on + strandat 839.846 kb on - strandat 839.846 kb on - strandat 839.846 kb on - strandat 839.870 kb on + strandat 839.888 kb on - strandat 839.994 kb on - strand, within MIT1002_00764at 840.093 kb on + strand, within MIT1002_00764at 840.176 kb on + strand, within MIT1002_00764at 840.218 kb on + strand, within MIT1002_00764at 840.252 kb on - strand, within MIT1002_00764at 840.273 kb on - strand, within MIT1002_00764at 840.330 kb on - strand, within MIT1002_00764at 840.332 kb on + strand, within MIT1002_00764at 840.426 kb on + strand, within MIT1002_00764at 840.536 kb on + strand, within MIT1002_00764at 840.626 kb on - strand, within MIT1002_00764at 840.660 kb on - strand, within MIT1002_00764at 840.731 kb on + strand, within MIT1002_00764at 840.768 kb on + strand, within MIT1002_00764at 840.768 kb on + strand, within MIT1002_00764at 840.768 kb on + strand, within MIT1002_00764at 840.776 kb on - strand, within MIT1002_00764at 840.882 kb on - strand, within MIT1002_00764at 840.892 kb on + strand, within MIT1002_00764at 840.892 kb on + strand, within MIT1002_00764at 840.899 kb on - strand, within MIT1002_00764at 840.899 kb on - strand, within MIT1002_00764at 840.900 kb on - strand, within MIT1002_00764at 840.993 kb on + strand, within MIT1002_00764at 840.995 kb on + strand, within MIT1002_00764at 841.003 kb on - strand, within MIT1002_00764at 841.005 kb on - strand, within MIT1002_00764at 841.022 kb on + strand, within MIT1002_00764at 841.033 kb on + strand, within MIT1002_00764at 841.041 kb on + strand, within MIT1002_00764at 841.041 kb on - strand, within MIT1002_00764at 841.049 kb on - strand, within MIT1002_00764at 841.107 kb on + strand, within MIT1002_00764at 841.127 kb on + strand, within MIT1002_00764at 841.128 kb on - strand, within MIT1002_00764at 841.138 kb on + strand, within MIT1002_00764at 841.154 kb on + strand, within MIT1002_00764at 841.162 kb on - strand, within MIT1002_00764at 841.168 kb on + strand, within MIT1002_00764at 841.168 kb on + strand, within MIT1002_00764at 841.176 kb on - strand, within MIT1002_00764at 841.176 kb on - strand, within MIT1002_00764at 841.210 kb on - strand, within MIT1002_00764at 841.248 kb on - strand, within MIT1002_00764at 841.290 kb on + strand, within MIT1002_00764at 841.350 kb on + strand, within MIT1002_00764at 841.356 kb on - strand, within MIT1002_00764at 841.358 kb on + strand, within MIT1002_00764at 841.402 kb on + strand, within MIT1002_00764at 841.493 kb on + strand, within MIT1002_00764at 841.494 kb on + strand, within MIT1002_00764at 841.495 kb on + strand, within MIT1002_00764at 841.495 kb on + strand, within MIT1002_00764at 841.503 kb on - strand, within MIT1002_00764at 841.503 kb on - strand, within MIT1002_00764at 841.577 kb on + strand, within MIT1002_00764at 841.577 kb on + strand, within MIT1002_00764at 841.582 kb on - strand, within MIT1002_00764at 841.584 kb on - strand, within MIT1002_00764at 841.585 kb on - strand, within MIT1002_00764at 841.585 kb on - strand, within MIT1002_00764at 841.707 kb on + strand, within MIT1002_00764at 841.817 kb on - strand, within MIT1002_00764at 841.836 kb on + strand, within MIT1002_00764at 841.896 kb on - strand, within MIT1002_00764at 841.909 kb on + strand, within MIT1002_00764at 841.909 kb on + strand, within MIT1002_00764at 841.909 kb on + strand, within MIT1002_00764at 841.909 kb on + strand, within MIT1002_00764at 841.909 kb on + strand, within MIT1002_00764at 841.909 kb on + strand, within MIT1002_00764at 841.909 kb on + strand, within MIT1002_00764at 841.909 kb on + strand, within MIT1002_00764at 841.917 kb on - strand, within MIT1002_00764at 841.917 kb on - strand, within MIT1002_00764at 841.917 kb on - strand, within MIT1002_00764at 841.917 kb on - strand, within MIT1002_00764at 841.917 kb on - strand, within MIT1002_00764at 841.917 kb on - strand, within MIT1002_00764at 841.917 kb on - strand, within MIT1002_00764at 841.917 kb on - strand, within MIT1002_00764at 841.939 kb on - strand, within MIT1002_00764at 841.965 kb on - strand, within MIT1002_00764at 842.038 kb on - strandat 842.072 kb on + strandat 842.130 kb on + strandat 842.156 kb on + strandat 842.258 kb on - strandat 842.268 kb on - strandat 842.271 kb on + strandat 842.271 kb on + strandat 842.396 kb on + strandat 842.411 kb on + strandat 842.488 kb on + strandat 842.545 kb on - strandat 842.664 kb on - strand, within MIT1002_00765at 842.704 kb on + strand, within MIT1002_00765at 842.738 kb on - strand, within MIT1002_00765at 842.777 kb on + strand, within MIT1002_00765at 842.783 kb on + strand, within MIT1002_00765at 842.825 kb on - strand, within MIT1002_00765at 842.839 kb on - strand, within MIT1002_00765at 842.839 kb on - strand, within MIT1002_00765at 842.917 kb on + strand, within MIT1002_00765at 842.993 kb on - strand, within MIT1002_00765at 842.995 kb on + strand, within MIT1002_00765at 843.004 kb on - strand, within MIT1002_00765at 843.004 kb on - strand, within MIT1002_00765at 843.009 kb on + strand, within MIT1002_00765at 843.147 kb on + strand, within MIT1002_00765at 843.147 kb on + strand, within MIT1002_00765at 843.155 kb on - strand, within MIT1002_00765at 843.155 kb on - strand, within MIT1002_00765at 843.155 kb on - strand, within MIT1002_00765at 843.263 kb on + strand, within MIT1002_00765

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5
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838,705 + MIT1002_00763 0.14 -0.6
838,705 + MIT1002_00763 0.14 -1.1
838,707 + MIT1002_00763 0.14 +1.9
838,713 - MIT1002_00763 0.14 -0.7
838,713 - MIT1002_00763 0.14 -0.0
838,713 - MIT1002_00763 0.14 -0.4
838,838 + MIT1002_00763 0.26 -0.4
838,883 + MIT1002_00763 0.30 +0.7
838,891 - MIT1002_00763 0.30 +2.5
838,936 + MIT1002_00763 0.35 -2.6
838,958 - MIT1002_00763 0.37 +1.2
838,980 - MIT1002_00763 0.39 -1.7
838,983 + MIT1002_00763 0.39 +0.5
839,056 - MIT1002_00763 0.45 +0.4
839,056 - MIT1002_00763 0.45 +0.4
839,088 + MIT1002_00763 0.48 -0.6
839,096 - MIT1002_00763 0.49 +2.5
839,096 - MIT1002_00763 0.49 +0.8
839,102 - MIT1002_00763 0.50 +0.4
839,159 - MIT1002_00763 0.55 +0.0
839,243 + MIT1002_00763 0.62 +0.3
839,243 - MIT1002_00763 0.62 -0.6
839,251 - MIT1002_00763 0.63 +1.7
839,251 - MIT1002_00763 0.63 +1.0
839,299 + MIT1002_00763 0.67 +0.3
839,299 + MIT1002_00763 0.67 -1.1
839,309 + MIT1002_00763 0.68 -1.3
839,345 - MIT1002_00763 0.72 -1.9
839,379 - MIT1002_00763 0.75 +0.7
839,386 - MIT1002_00763 0.75 +0.2
839,386 - MIT1002_00763 0.75 -1.0
839,386 - MIT1002_00763 0.75 +0.7
839,412 - MIT1002_00763 0.78 +0.1
839,412 - MIT1002_00763 0.78 +0.8
839,423 - MIT1002_00763 0.79 +1.8
839,446 + MIT1002_00763 0.81 +0.8
839,446 + MIT1002_00763 0.81 -1.6
839,454 - MIT1002_00763 0.82 +1.0
839,454 - MIT1002_00763 0.82 +1.2
839,454 - MIT1002_00763 0.82 -0.9
839,454 - MIT1002_00763 0.82 -0.8
839,454 - MIT1002_00763 0.82 +0.6
839,529 - MIT1002_00763 0.88 -2.1
839,546 + MIT1002_00763 0.90 -1.3
839,554 - -2.4
839,716 + -1.3
839,764 + +1.2
839,798 - +1.7
839,828 + -1.0
839,828 + +0.5
839,846 - +0.6
839,846 - +2.3
839,846 - +0.4
839,870 + +0.1
839,888 - -0.5
839,994 - MIT1002_00764 0.13 +0.0
840,093 + MIT1002_00764 0.17 -0.9
840,176 + MIT1002_00764 0.20 -1.4
840,218 + MIT1002_00764 0.22 -1.2
840,252 - MIT1002_00764 0.23 +0.7
840,273 - MIT1002_00764 0.24 -2.0
840,330 - MIT1002_00764 0.26 +0.4
840,332 + MIT1002_00764 0.26 -0.1
840,426 + MIT1002_00764 0.30 -0.2
840,536 + MIT1002_00764 0.34 -0.8
840,626 - MIT1002_00764 0.37 -2.2
840,660 - MIT1002_00764 0.38 +1.3
840,731 + MIT1002_00764 0.41 +0.3
840,768 + MIT1002_00764 0.43 +0.9
840,768 + MIT1002_00764 0.43 -0.1
840,768 + MIT1002_00764 0.43 -1.6
840,776 - MIT1002_00764 0.43 +0.7
840,882 - MIT1002_00764 0.47 -0.9
840,892 + MIT1002_00764 0.47 -1.0
840,892 + MIT1002_00764 0.47 -2.3
840,899 - MIT1002_00764 0.48 -1.2
840,899 - MIT1002_00764 0.48 +0.1
840,900 - MIT1002_00764 0.48 -1.2
840,993 + MIT1002_00764 0.51 +0.8
840,995 + MIT1002_00764 0.51 +0.5
841,003 - MIT1002_00764 0.52 -0.2
841,005 - MIT1002_00764 0.52 -1.6
841,022 + MIT1002_00764 0.52 +1.0
841,033 + MIT1002_00764 0.53 +0.2
841,041 + MIT1002_00764 0.53 +1.1
841,041 - MIT1002_00764 0.53 +1.3
841,049 - MIT1002_00764 0.53 -1.7
841,107 + MIT1002_00764 0.55 -1.8
841,127 + MIT1002_00764 0.56 +1.9
841,128 - MIT1002_00764 0.56 -1.3
841,138 + MIT1002_00764 0.57 +0.2
841,154 + MIT1002_00764 0.57 +0.2
841,162 - MIT1002_00764 0.58 -0.5
841,168 + MIT1002_00764 0.58 +0.5
841,168 + MIT1002_00764 0.58 -0.0
841,176 - MIT1002_00764 0.58 +1.1
841,176 - MIT1002_00764 0.58 -1.8
841,210 - MIT1002_00764 0.59 +0.7
841,248 - MIT1002_00764 0.61 +0.0
841,290 + MIT1002_00764 0.62 -2.3
841,350 + MIT1002_00764 0.65 +1.2
841,356 - MIT1002_00764 0.65 -0.6
841,358 + MIT1002_00764 0.65 +0.7
841,402 + MIT1002_00764 0.67 +0.8
841,493 + MIT1002_00764 0.70 -0.6
841,494 + MIT1002_00764 0.70 +0.8
841,495 + MIT1002_00764 0.70 +1.4
841,495 + MIT1002_00764 0.70 -0.1
841,503 - MIT1002_00764 0.71 -2.4
841,503 - MIT1002_00764 0.71 -0.5
841,577 + MIT1002_00764 0.73 -1.1
841,577 + MIT1002_00764 0.73 +0.8
841,582 - MIT1002_00764 0.74 -1.7
841,584 - MIT1002_00764 0.74 -2.7
841,585 - MIT1002_00764 0.74 +0.7
841,585 - MIT1002_00764 0.74 +0.4
841,707 + MIT1002_00764 0.78 -1.1
841,817 - MIT1002_00764 0.82 +1.7
841,836 + MIT1002_00764 0.83 +0.8
841,896 - MIT1002_00764 0.86 -2.8
841,909 + MIT1002_00764 0.86 -0.9
841,909 + MIT1002_00764 0.86 -1.5
841,909 + MIT1002_00764 0.86 +1.2
841,909 + MIT1002_00764 0.86 +0.2
841,909 + MIT1002_00764 0.86 +2.6
841,909 + MIT1002_00764 0.86 -0.2
841,909 + MIT1002_00764 0.86 -2.0
841,909 + MIT1002_00764 0.86 -0.8
841,917 - MIT1002_00764 0.86 -0.5
841,917 - MIT1002_00764 0.86 -0.6
841,917 - MIT1002_00764 0.86 -1.2
841,917 - MIT1002_00764 0.86 +1.5
841,917 - MIT1002_00764 0.86 +0.2
841,917 - MIT1002_00764 0.86 +0.3
841,917 - MIT1002_00764 0.86 -2.5
841,917 - MIT1002_00764 0.86 -1.1
841,939 - MIT1002_00764 0.87 -0.4
841,965 - MIT1002_00764 0.88 +1.5
842,038 - +3.0
842,072 + +1.1
842,130 + +0.9
842,156 + +0.2
842,258 - +0.0
842,268 - -0.7
842,271 + +0.2
842,271 + +1.0
842,396 + +1.6
842,411 + -0.7
842,488 + -2.8
842,545 - -0.6
842,664 - MIT1002_00765 0.16 -0.4
842,704 + MIT1002_00765 0.18 -1.0
842,738 - MIT1002_00765 0.21 +1.0
842,777 + MIT1002_00765 0.23 -1.5
842,783 + MIT1002_00765 0.24 -0.3
842,825 - MIT1002_00765 0.26 +0.5
842,839 - MIT1002_00765 0.27 -1.4
842,839 - MIT1002_00765 0.27 -0.4
842,917 + MIT1002_00765 0.32 -0.4
842,993 - MIT1002_00765 0.37 +0.3
842,995 + MIT1002_00765 0.37 +0.0
843,004 - MIT1002_00765 0.38 -0.2
843,004 - MIT1002_00765 0.38 -0.8
843,009 + MIT1002_00765 0.38 +0.9
843,147 + MIT1002_00765 0.47 +2.6
843,147 + MIT1002_00765 0.47 -0.8
843,155 - MIT1002_00765 0.47 +0.4
843,155 - MIT1002_00765 0.47 -0.3
843,155 - MIT1002_00765 0.47 +0.2
843,263 + MIT1002_00765 0.54 +0.3

Or see this region's nucleotide sequence