Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00461 and MIT1002_00462 are separated by 263 nucleotides MIT1002_00462 and MIT1002_00463 are separated by 108 nucleotides MIT1002_00463 and MIT1002_00464 are separated by 15 nucleotides MIT1002_00464 and MIT1002_00465 are separated by 6 nucleotides
MIT1002_00461: MIT1002_00461 - Catalase, at 505,626 to 507,101
_00461
MIT1002_00462: MIT1002_00462 - Small integral membrane protein, at 507,365 to 507,532
_00462
MIT1002_00463: MIT1002_00463 - hypothetical protein, at 507,641 to 507,898
_00463
MIT1002_00464: MIT1002_00464 - hypothetical protein, at 507,914 to 508,081
_00464
MIT1002_00465: MIT1002_00465 - monoglyceride lipase, at 508,088 to 508,984
_00465
Position (kb) 507
508 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 506.642 kb on - strand, within MIT1002_00461 at 506.717 kb on + strand, within MIT1002_00461 at 506.727 kb on + strand, within MIT1002_00461 at 506.753 kb on - strand, within MIT1002_00461 at 506.760 kb on - strand, within MIT1002_00461 at 506.796 kb on - strand, within MIT1002_00461 at 506.995 kb on + strand at 506.995 kb on + strand at 507.003 kb on - strand at 507.003 kb on - strand at 507.003 kb on - strand at 507.003 kb on - strand at 507.003 kb on - strand at 507.009 kb on + strand at 507.047 kb on - strand at 507.050 kb on + strand at 507.054 kb on + strand at 507.074 kb on + strand at 507.074 kb on + strand at 507.082 kb on - strand at 507.209 kb on + strand at 507.271 kb on - strand at 507.312 kb on - strand at 507.365 kb on + strand at 507.551 kb on - strand at 507.577 kb on + strand at 507.585 kb on - strand at 507.595 kb on - strand at 507.618 kb on + strand at 507.645 kb on + strand at 507.657 kb on + strand at 507.665 kb on - strand at 507.665 kb on - strand at 507.677 kb on + strand, within MIT1002_00463 at 507.840 kb on + strand, within MIT1002_00463 at 507.848 kb on - strand, within MIT1002_00463 at 507.854 kb on - strand, within MIT1002_00463 at 507.919 kb on - strand at 508.083 kb on - strand at 508.179 kb on + strand, within MIT1002_00465 at 508.266 kb on + strand, within MIT1002_00465 at 508.361 kb on + strand, within MIT1002_00465 at 508.361 kb on + strand, within MIT1002_00465 at 508.369 kb on - strand, within MIT1002_00465 at 508.466 kb on + strand, within MIT1002_00465 at 508.535 kb on + strand, within MIT1002_00465 at 508.535 kb on + strand, within MIT1002_00465 at 508.543 kb on - strand, within MIT1002_00465 at 508.564 kb on + strand, within MIT1002_00465 at 508.586 kb on + strand, within MIT1002_00465 at 508.586 kb on - strand, within MIT1002_00465 at 508.642 kb on - strand, within MIT1002_00465 at 508.692 kb on + strand, within MIT1002_00465 at 508.782 kb on - strand, within MIT1002_00465 at 508.868 kb on - strand, within MIT1002_00465 at 508.881 kb on - strand, within MIT1002_00465
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5 remove 506,642 - MIT1002_00461 0.69 -2.5 506,717 + MIT1002_00461 0.74 -3.5 506,727 + MIT1002_00461 0.75 -0.6 506,753 - MIT1002_00461 0.76 -0.6 506,760 - MIT1002_00461 0.77 -3.5 506,796 - MIT1002_00461 0.79 +1.2 506,995 + -0.6 506,995 + -1.8 507,003 - -1.8 507,003 - -0.3 507,003 - -0.3 507,003 - +1.4 507,003 - +0.0 507,009 + -0.3 507,047 - -0.9 507,050 + +0.0 507,054 + -1.3 507,074 + -1.0 507,074 + +1.4 507,082 - +0.7 507,209 + +1.4 507,271 - +0.9 507,312 - +0.2 507,365 + +1.2 507,551 - +1.1 507,577 + -0.5 507,585 - +1.1 507,595 - -0.2 507,618 + -1.4 507,645 + +0.3 507,657 + +0.4 507,665 - -0.7 507,665 - -0.7 507,677 + MIT1002_00463 0.14 -0.4 507,840 + MIT1002_00463 0.77 +0.9 507,848 - MIT1002_00463 0.80 -0.3 507,854 - MIT1002_00463 0.83 +0.9 507,919 - -0.6 508,083 - -1.2 508,179 + MIT1002_00465 0.10 +0.7 508,266 + MIT1002_00465 0.20 -0.7 508,361 + MIT1002_00465 0.30 -2.4 508,361 + MIT1002_00465 0.30 +0.7 508,369 - MIT1002_00465 0.31 -0.3 508,466 + MIT1002_00465 0.42 -0.5 508,535 + MIT1002_00465 0.50 +1.5 508,535 + MIT1002_00465 0.50 -0.5 508,543 - MIT1002_00465 0.51 -0.2 508,564 + MIT1002_00465 0.53 -2.8 508,586 + MIT1002_00465 0.56 -2.2 508,586 - MIT1002_00465 0.56 +2.3 508,642 - MIT1002_00465 0.62 -1.3 508,692 + MIT1002_00465 0.67 -1.4 508,782 - MIT1002_00465 0.77 +3.1 508,868 - MIT1002_00465 0.87 +0.8 508,881 - MIT1002_00465 0.88 -2.2
Or see this region's nucleotide sequence