Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00434

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00433 and MIT1002_00434 are separated by 65 nucleotidesMIT1002_00434 and MIT1002_00435 are separated by 117 nucleotides MIT1002_00433: MIT1002_00433 - Cyclic di-GMP phosphodiesterase Gmr, at 472,576 to 474,744 _00433 MIT1002_00434: MIT1002_00434 - hypothetical protein, at 474,810 to 475,616 _00434 MIT1002_00435: MIT1002_00435 - N-succinylglutamate 5-semialdehyde dehydrogenase, at 475,734 to 477,203 _00435 Position (kb) 474 475 476Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 473.810 kb on + strand, within MIT1002_00433at 473.873 kb on + strand, within MIT1002_00433at 473.894 kb on + strand, within MIT1002_00433at 473.919 kb on + strand, within MIT1002_00433at 473.927 kb on - strand, within MIT1002_00433at 473.927 kb on - strand, within MIT1002_00433at 473.953 kb on - strand, within MIT1002_00433at 473.976 kb on + strand, within MIT1002_00433at 473.978 kb on + strand, within MIT1002_00433at 473.997 kb on + strand, within MIT1002_00433at 473.997 kb on + strand, within MIT1002_00433at 473.997 kb on + strand, within MIT1002_00433at 474.002 kb on + strand, within MIT1002_00433at 474.002 kb on + strand, within MIT1002_00433at 474.002 kb on + strand, within MIT1002_00433at 474.005 kb on - strand, within MIT1002_00433at 474.010 kb on - strand, within MIT1002_00433at 474.059 kb on - strand, within MIT1002_00433at 474.074 kb on + strand, within MIT1002_00433at 474.074 kb on + strand, within MIT1002_00433at 474.087 kb on - strand, within MIT1002_00433at 474.087 kb on - strand, within MIT1002_00433at 474.094 kb on + strand, within MIT1002_00433at 474.113 kb on - strand, within MIT1002_00433at 474.118 kb on - strand, within MIT1002_00433at 474.129 kb on - strand, within MIT1002_00433at 474.173 kb on - strand, within MIT1002_00433at 474.236 kb on - strand, within MIT1002_00433at 474.265 kb on + strand, within MIT1002_00433at 474.265 kb on + strand, within MIT1002_00433at 474.273 kb on - strand, within MIT1002_00433at 474.301 kb on + strand, within MIT1002_00433at 474.364 kb on + strand, within MIT1002_00433at 474.407 kb on + strand, within MIT1002_00433at 474.422 kb on + strand, within MIT1002_00433at 474.422 kb on + strand, within MIT1002_00433at 474.430 kb on - strand, within MIT1002_00433at 474.430 kb on - strand, within MIT1002_00433at 474.498 kb on + strand, within MIT1002_00433at 474.506 kb on - strand, within MIT1002_00433at 474.558 kb on + strandat 474.558 kb on + strandat 474.566 kb on - strandat 474.566 kb on - strandat 474.566 kb on - strandat 474.587 kb on - strandat 474.614 kb on + strandat 474.649 kb on - strandat 474.649 kb on - strandat 474.659 kb on - strandat 474.728 kb on - strandat 474.776 kb on + strandat 474.961 kb on - strand, within MIT1002_00434at 475.029 kb on + strand, within MIT1002_00434at 475.062 kb on + strand, within MIT1002_00434at 475.097 kb on + strand, within MIT1002_00434at 475.105 kb on - strand, within MIT1002_00434at 475.183 kb on - strand, within MIT1002_00434at 475.187 kb on - strand, within MIT1002_00434at 475.206 kb on + strand, within MIT1002_00434at 475.364 kb on + strand, within MIT1002_00434at 475.401 kb on + strand, within MIT1002_00434at 475.402 kb on + strand, within MIT1002_00434at 475.532 kb on - strand, within MIT1002_00434at 475.532 kb on - strand, within MIT1002_00434at 475.584 kb on - strandat 475.675 kb on + strandat 475.675 kb on + strandat 475.675 kb on + strandat 475.675 kb on + strandat 475.683 kb on - strandat 475.683 kb on - strandat 475.707 kb on + strandat 475.728 kb on - strandat 475.731 kb on + strandat 475.812 kb on + strandat 475.820 kb on - strandat 475.820 kb on - strandat 475.820 kb on - strandat 475.845 kb on - strandat 475.908 kb on - strand, within MIT1002_00435at 475.994 kb on + strand, within MIT1002_00435at 476.060 kb on + strand, within MIT1002_00435at 476.267 kb on + strand, within MIT1002_00435at 476.320 kb on + strand, within MIT1002_00435at 476.323 kb on - strand, within MIT1002_00435at 476.325 kb on + strand, within MIT1002_00435at 476.328 kb on - strand, within MIT1002_00435at 476.328 kb on - strand, within MIT1002_00435at 476.354 kb on - strand, within MIT1002_00435at 476.354 kb on - strand, within MIT1002_00435at 476.360 kb on + strand, within MIT1002_00435at 476.370 kb on - strand, within MIT1002_00435at 476.375 kb on + strand, within MIT1002_00435at 476.375 kb on + strand, within MIT1002_00435at 476.433 kb on - strand, within MIT1002_00435at 476.497 kb on + strand, within MIT1002_00435at 476.505 kb on - strand, within MIT1002_00435at 476.505 kb on - strand, within MIT1002_00435at 476.505 kb on - strand, within MIT1002_00435at 476.582 kb on - strand, within MIT1002_00435at 476.583 kb on - strand, within MIT1002_00435at 476.611 kb on + strand, within MIT1002_00435at 476.614 kb on - strand, within MIT1002_00435at 476.614 kb on - strand, within MIT1002_00435

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5
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473,810 + MIT1002_00433 0.57 -1.0
473,873 + MIT1002_00433 0.60 +0.5
473,894 + MIT1002_00433 0.61 -1.4
473,919 + MIT1002_00433 0.62 +1.7
473,927 - MIT1002_00433 0.62 +0.0
473,927 - MIT1002_00433 0.62 +1.2
473,953 - MIT1002_00433 0.63 -0.3
473,976 + MIT1002_00433 0.65 +0.4
473,978 + MIT1002_00433 0.65 -0.2
473,997 + MIT1002_00433 0.66 -1.6
473,997 + MIT1002_00433 0.66 +0.3
473,997 + MIT1002_00433 0.66 +1.7
474,002 + MIT1002_00433 0.66 +0.9
474,002 + MIT1002_00433 0.66 -1.1
474,002 + MIT1002_00433 0.66 +0.9
474,005 - MIT1002_00433 0.66 -2.8
474,010 - MIT1002_00433 0.66 -2.9
474,059 - MIT1002_00433 0.68 -1.2
474,074 + MIT1002_00433 0.69 +0.2
474,074 + MIT1002_00433 0.69 -1.1
474,087 - MIT1002_00433 0.70 +0.4
474,087 - MIT1002_00433 0.70 -0.7
474,094 + MIT1002_00433 0.70 +0.7
474,113 - MIT1002_00433 0.71 -1.3
474,118 - MIT1002_00433 0.71 +0.4
474,129 - MIT1002_00433 0.72 +0.5
474,173 - MIT1002_00433 0.74 +0.4
474,236 - MIT1002_00433 0.77 +1.5
474,265 + MIT1002_00433 0.78 +1.1
474,265 + MIT1002_00433 0.78 -0.3
474,273 - MIT1002_00433 0.78 -0.3
474,301 + MIT1002_00433 0.80 -0.7
474,364 + MIT1002_00433 0.82 -0.1
474,407 + MIT1002_00433 0.84 -1.2
474,422 + MIT1002_00433 0.85 -0.1
474,422 + MIT1002_00433 0.85 +0.3
474,430 - MIT1002_00433 0.85 -0.1
474,430 - MIT1002_00433 0.85 -0.1
474,498 + MIT1002_00433 0.89 -0.2
474,506 - MIT1002_00433 0.89 -1.0
474,558 + +0.1
474,558 + +1.1
474,566 - +1.3
474,566 - -1.0
474,566 - -0.9
474,587 - -0.5
474,614 + +0.6
474,649 - -1.6
474,649 - -0.2
474,659 - -0.4
474,728 - -3.0
474,776 + -2.5
474,961 - MIT1002_00434 0.19 +1.2
475,029 + MIT1002_00434 0.27 +1.4
475,062 + MIT1002_00434 0.31 -0.4
475,097 + MIT1002_00434 0.36 +1.3
475,105 - MIT1002_00434 0.37 +0.3
475,183 - MIT1002_00434 0.46 +1.9
475,187 - MIT1002_00434 0.47 -1.6
475,206 + MIT1002_00434 0.49 +2.0
475,364 + MIT1002_00434 0.69 +1.0
475,401 + MIT1002_00434 0.73 +0.7
475,402 + MIT1002_00434 0.73 +1.2
475,532 - MIT1002_00434 0.89 +1.3
475,532 - MIT1002_00434 0.89 +1.5
475,584 - -1.4
475,675 + +1.2
475,675 + -1.0
475,675 + -0.9
475,675 + +2.0
475,683 - +1.1
475,683 - +0.8
475,707 + -1.6
475,728 - -0.2
475,731 + -0.2
475,812 + -0.6
475,820 - +3.0
475,820 - -1.0
475,820 - +1.4
475,845 - +0.7
475,908 - MIT1002_00435 0.12 +2.1
475,994 + MIT1002_00435 0.18 -1.1
476,060 + MIT1002_00435 0.22 +0.9
476,267 + MIT1002_00435 0.36 +1.0
476,320 + MIT1002_00435 0.40 -0.6
476,323 - MIT1002_00435 0.40 -0.3
476,325 + MIT1002_00435 0.40 +0.3
476,328 - MIT1002_00435 0.40 +1.2
476,328 - MIT1002_00435 0.40 +1.1
476,354 - MIT1002_00435 0.42 +0.6
476,354 - MIT1002_00435 0.42 +2.4
476,360 + MIT1002_00435 0.43 +0.4
476,370 - MIT1002_00435 0.43 +0.4
476,375 + MIT1002_00435 0.44 +0.7
476,375 + MIT1002_00435 0.44 -1.8
476,433 - MIT1002_00435 0.48 +1.3
476,497 + MIT1002_00435 0.52 +0.4
476,505 - MIT1002_00435 0.52 +0.4
476,505 - MIT1002_00435 0.52 -0.4
476,505 - MIT1002_00435 0.52 +0.3
476,582 - MIT1002_00435 0.58 -0.4
476,583 - MIT1002_00435 0.58 -0.2
476,611 + MIT1002_00435 0.60 +0.1
476,614 - MIT1002_00435 0.60 +1.2
476,614 - MIT1002_00435 0.60 +1.9

Or see this region's nucleotide sequence