Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00390 and MIT1002_00391 are separated by 2 nucleotides MIT1002_00391 and MIT1002_00392 overlap by 1 nucleotides MIT1002_00392 and MIT1002_00393 overlap by 1 nucleotides MIT1002_00393 and MIT1002_00394 are separated by 85 nucleotides MIT1002_00394 and MIT1002_00395 are separated by 438 nucleotides
MIT1002_00390: MIT1002_00390 - 30S ribosomal protein S3, at 419,817 to 420,521
_00390
MIT1002_00391: MIT1002_00391 - 50S ribosomal protein L16, at 420,524 to 420,934
_00391
MIT1002_00392: MIT1002_00392 - 50S ribosomal protein L29, at 420,934 to 421,125
_00392
MIT1002_00393: MIT1002_00393 - 30S ribosomal protein S17, at 421,125 to 421,382
_00393
MIT1002_00394: MIT1002_00394 - Glycogen synthase, at 421,468 to 421,962
_00394
MIT1002_00395: MIT1002_00395 - 3-deoxy-D-manno-octulosonic acid transferase, at 422,401 to 423,711
_00395
Position (kb) 421
422 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 421.466 kb on + strand at 421.474 kb on - strand at 421.498 kb on + strand at 421.500 kb on - strand at 421.510 kb on + strand at 421.573 kb on - strand, within MIT1002_00394 at 421.670 kb on - strand, within MIT1002_00394 at 421.712 kb on + strand, within MIT1002_00394 at 421.717 kb on + strand, within MIT1002_00394 at 421.723 kb on - strand, within MIT1002_00394 at 421.725 kb on - strand, within MIT1002_00394 at 421.838 kb on + strand, within MIT1002_00394 at 421.857 kb on + strand, within MIT1002_00394 at 421.865 kb on - strand, within MIT1002_00394 at 421.927 kb on + strand at 422.068 kb on + strand at 422.095 kb on + strand at 422.103 kb on - strand at 422.303 kb on + strand at 422.305 kb on + strand at 422.305 kb on + strand at 422.305 kb on + strand at 422.311 kb on - strand at 422.311 kb on - strand at 422.313 kb on - strand at 422.313 kb on - strand at 422.313 kb on - strand at 422.363 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5 remove 421,466 + +0.9 421,474 - +1.2 421,498 + -0.3 421,500 - +0.9 421,510 + +0.8 421,573 - MIT1002_00394 0.21 +0.5 421,670 - MIT1002_00394 0.41 -0.6 421,712 + MIT1002_00394 0.49 +0.9 421,717 + MIT1002_00394 0.50 +0.3 421,723 - MIT1002_00394 0.52 +0.7 421,725 - MIT1002_00394 0.52 -1.3 421,838 + MIT1002_00394 0.75 +0.2 421,857 + MIT1002_00394 0.79 -0.1 421,865 - MIT1002_00394 0.80 +2.8 421,927 + +1.5 422,068 + +1.0 422,095 + +0.4 422,103 - -2.2 422,303 + +1.2 422,305 + -1.1 422,305 + +1.8 422,305 + -2.0 422,311 - +2.9 422,311 - +0.1 422,313 - -0.7 422,313 - -0.5 422,313 - -2.0 422,363 - -1.8
Or see this region's nucleotide sequence