Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00366 and MIT1002_00367 overlap by 8 nucleotides MIT1002_00367 and MIT1002_00368 are separated by 44 nucleotides MIT1002_00368 and MIT1002_00369 overlap by 1 nucleotides MIT1002_00369 and MIT1002_00370 are separated by 65 nucleotides
MIT1002_00366: MIT1002_00366 - Putative nucleoside transporter YegT, at 394,662 to 395,879
_00366
MIT1002_00367: MIT1002_00367 - Hydroxypyruvate isomerase, at 395,872 to 396,801
_00367
MIT1002_00368: MIT1002_00368 - 6'''-hydroxyparomomycin C oxidase, at 396,846 to 398,531
_00368
MIT1002_00369: MIT1002_00369 - hypothetical protein, at 398,531 to 399,148
_00369
MIT1002_00370: MIT1002_00370 - hypothetical protein, at 399,214 to 399,981
_00370
Position (kb) 396
397
398
399 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10
11 at 395.854 kb on - strand at 395.887 kb on + strand at 395.907 kb on - strand at 395.941 kb on + strand at 395.941 kb on + strand at 395.944 kb on - strand at 395.949 kb on - strand at 395.968 kb on + strand, within MIT1002_00367 at 396.036 kb on - strand, within MIT1002_00367 at 396.071 kb on - strand, within MIT1002_00367 at 396.117 kb on - strand, within MIT1002_00367 at 396.117 kb on - strand, within MIT1002_00367 at 396.157 kb on + strand, within MIT1002_00367 at 396.217 kb on - strand, within MIT1002_00367 at 396.263 kb on + strand, within MIT1002_00367 at 396.263 kb on + strand, within MIT1002_00367 at 396.271 kb on - strand, within MIT1002_00367 at 396.271 kb on - strand, within MIT1002_00367 at 396.271 kb on - strand, within MIT1002_00367 at 396.336 kb on - strand, within MIT1002_00367 at 396.373 kb on + strand, within MIT1002_00367 at 396.375 kb on - strand, within MIT1002_00367 at 396.382 kb on - strand, within MIT1002_00367 at 396.465 kb on - strand, within MIT1002_00367 at 396.466 kb on + strand, within MIT1002_00367 at 396.485 kb on + strand, within MIT1002_00367 at 396.509 kb on + strand, within MIT1002_00367 at 396.509 kb on + strand, within MIT1002_00367 at 396.509 kb on + strand, within MIT1002_00367 at 396.517 kb on - strand, within MIT1002_00367 at 396.517 kb on - strand, within MIT1002_00367 at 396.527 kb on - strand, within MIT1002_00367 at 396.641 kb on + strand, within MIT1002_00367 at 396.709 kb on - strand at 396.718 kb on + strand at 396.718 kb on + strand at 396.726 kb on + strand at 396.726 kb on + strand at 396.726 kb on + strand at 396.726 kb on - strand at 396.753 kb on + strand at 396.766 kb on - strand at 396.795 kb on + strand at 396.838 kb on + strand at 396.841 kb on + strand at 396.843 kb on + strand at 396.849 kb on - strand at 396.849 kb on - strand at 396.906 kb on + strand at 396.928 kb on + strand at 396.951 kb on - strand at 396.993 kb on + strand at 397.054 kb on + strand, within MIT1002_00368 at 397.062 kb on - strand, within MIT1002_00368 at 397.092 kb on + strand, within MIT1002_00368 at 397.154 kb on + strand, within MIT1002_00368 at 397.154 kb on + strand, within MIT1002_00368 at 397.162 kb on - strand, within MIT1002_00368 at 397.162 kb on - strand, within MIT1002_00368 at 397.162 kb on - strand, within MIT1002_00368 at 397.162 kb on - strand, within MIT1002_00368 at 397.173 kb on - strand, within MIT1002_00368 at 397.181 kb on - strand, within MIT1002_00368 at 397.187 kb on + strand, within MIT1002_00368 at 397.195 kb on - strand, within MIT1002_00368 at 397.195 kb on - strand, within MIT1002_00368 at 397.264 kb on + strand, within MIT1002_00368 at 397.272 kb on - strand, within MIT1002_00368 at 397.293 kb on + strand, within MIT1002_00368 at 397.293 kb on + strand, within MIT1002_00368 at 397.301 kb on - strand, within MIT1002_00368 at 397.342 kb on + strand, within MIT1002_00368 at 397.371 kb on - strand, within MIT1002_00368 at 397.400 kb on + strand, within MIT1002_00368 at 397.418 kb on + strand, within MIT1002_00368 at 397.436 kb on - strand, within MIT1002_00368 at 397.452 kb on + strand, within MIT1002_00368 at 397.452 kb on + strand, within MIT1002_00368 at 397.452 kb on + strand, within MIT1002_00368 at 397.506 kb on - strand, within MIT1002_00368 at 397.597 kb on - strand, within MIT1002_00368 at 397.603 kb on + strand, within MIT1002_00368 at 397.603 kb on + strand, within MIT1002_00368 at 397.741 kb on + strand, within MIT1002_00368 at 397.754 kb on - strand, within MIT1002_00368 at 397.914 kb on - strand, within MIT1002_00368 at 397.921 kb on + strand, within MIT1002_00368 at 398.041 kb on - strand, within MIT1002_00368 at 398.044 kb on - strand, within MIT1002_00368 at 398.052 kb on - strand, within MIT1002_00368 at 398.058 kb on - strand, within MIT1002_00368 at 398.060 kb on + strand, within MIT1002_00368 at 398.068 kb on - strand, within MIT1002_00368 at 398.068 kb on - strand, within MIT1002_00368 at 398.068 kb on - strand, within MIT1002_00368 at 398.197 kb on - strand, within MIT1002_00368 at 398.229 kb on + strand, within MIT1002_00368 at 398.247 kb on + strand, within MIT1002_00368 at 398.247 kb on + strand, within MIT1002_00368 at 398.253 kb on - strand, within MIT1002_00368 at 398.285 kb on + strand, within MIT1002_00368 at 398.307 kb on - strand, within MIT1002_00368 at 398.319 kb on - strand, within MIT1002_00368 at 398.345 kb on - strand, within MIT1002_00368 at 398.362 kb on + strand, within MIT1002_00368 at 398.362 kb on + strand, within MIT1002_00368 at 398.446 kb on + strand at 398.446 kb on + strand at 398.446 kb on + strand at 398.446 kb on + strand at 398.446 kb on + strand at 398.451 kb on + strand at 398.454 kb on - strand at 398.454 kb on - strand at 398.454 kb on - strand at 398.454 kb on - strand at 398.454 kb on - strand at 398.464 kb on + strand at 398.488 kb on - strand at 398.607 kb on + strand, within MIT1002_00369 at 398.630 kb on - strand, within MIT1002_00369 at 398.758 kb on - strand, within MIT1002_00369 at 398.774 kb on + strand, within MIT1002_00369 at 398.782 kb on - strand, within MIT1002_00369 at 398.987 kb on - strand, within MIT1002_00369 at 398.996 kb on - strand, within MIT1002_00369 at 399.090 kb on - strand at 399.095 kb on - strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.143 kb on + strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.151 kb on - strand at 399.179 kb on + strand at 399.179 kb on + strand at 399.181 kb on + strand at 399.182 kb on - strand at 399.203 kb on + strand at 399.224 kb on - strand at 399.307 kb on + strand, within MIT1002_00370 at 399.325 kb on - strand, within MIT1002_00370 at 399.380 kb on + strand, within MIT1002_00370 at 399.388 kb on - strand, within MIT1002_00370 at 399.423 kb on - strand, within MIT1002_00370 at 399.454 kb on + strand, within MIT1002_00370 at 399.460 kb on + strand, within MIT1002_00370 at 399.460 kb on - strand, within MIT1002_00370 at 399.469 kb on + strand, within MIT1002_00370 at 399.469 kb on + strand, within MIT1002_00370 at 399.477 kb on - strand, within MIT1002_00370 at 399.495 kb on + strand, within MIT1002_00370
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5 remove 395,854 - +1.3 395,887 + +1.2 395,907 - -1.1 395,941 + +1.2 395,941 + -0.3 395,944 - +0.9 395,949 - +1.8 395,968 + MIT1002_00367 0.10 -0.3 396,036 - MIT1002_00367 0.18 +0.1 396,071 - MIT1002_00367 0.21 +1.4 396,117 - MIT1002_00367 0.26 +1.5 396,117 - MIT1002_00367 0.26 -0.4 396,157 + MIT1002_00367 0.31 +0.4 396,217 - MIT1002_00367 0.37 +0.3 396,263 + MIT1002_00367 0.42 +0.4 396,263 + MIT1002_00367 0.42 -1.3 396,271 - MIT1002_00367 0.43 -0.4 396,271 - MIT1002_00367 0.43 -1.0 396,271 - MIT1002_00367 0.43 -1.1 396,336 - MIT1002_00367 0.50 +0.3 396,373 + MIT1002_00367 0.54 -0.6 396,375 - MIT1002_00367 0.54 +1.2 396,382 - MIT1002_00367 0.55 -0.9 396,465 - MIT1002_00367 0.64 +0.5 396,466 + MIT1002_00367 0.64 +0.5 396,485 + MIT1002_00367 0.66 -2.2 396,509 + MIT1002_00367 0.68 -0.4 396,509 + MIT1002_00367 0.68 -0.9 396,509 + MIT1002_00367 0.68 -2.0 396,517 - MIT1002_00367 0.69 +1.0 396,517 - MIT1002_00367 0.69 +0.5 396,527 - MIT1002_00367 0.70 -0.5 396,641 + MIT1002_00367 0.83 +0.8 396,709 - -2.1 396,718 + -0.7 396,718 + +0.4 396,726 + -3.1 396,726 + -0.4 396,726 + -0.4 396,726 - -0.7 396,753 + -1.3 396,766 - +0.3 396,795 + -2.3 396,838 + -0.2 396,841 + -0.1 396,843 + +2.6 396,849 - +0.0 396,849 - -0.5 396,906 + -0.0 396,928 + +0.0 396,951 - -1.4 396,993 + -0.4 397,054 + MIT1002_00368 0.12 +0.6 397,062 - MIT1002_00368 0.13 +1.4 397,092 + MIT1002_00368 0.15 -0.1 397,154 + MIT1002_00368 0.18 +0.9 397,154 + MIT1002_00368 0.18 +0.5 397,162 - MIT1002_00368 0.19 +0.6 397,162 - MIT1002_00368 0.19 +0.8 397,162 - MIT1002_00368 0.19 +0.9 397,162 - MIT1002_00368 0.19 -1.6 397,173 - MIT1002_00368 0.19 +2.0 397,181 - MIT1002_00368 0.20 -1.5 397,187 + MIT1002_00368 0.20 -0.2 397,195 - MIT1002_00368 0.21 +0.6 397,195 - MIT1002_00368 0.21 +1.2 397,264 + MIT1002_00368 0.25 +0.3 397,272 - MIT1002_00368 0.25 -0.9 397,293 + MIT1002_00368 0.27 -1.7 397,293 + MIT1002_00368 0.27 +2.0 397,301 - MIT1002_00368 0.27 -0.2 397,342 + MIT1002_00368 0.29 -1.0 397,371 - MIT1002_00368 0.31 -2.0 397,400 + MIT1002_00368 0.33 +0.2 397,418 + MIT1002_00368 0.34 -0.2 397,436 - MIT1002_00368 0.35 +1.6 397,452 + MIT1002_00368 0.36 -1.0 397,452 + MIT1002_00368 0.36 -0.5 397,452 + MIT1002_00368 0.36 -0.8 397,506 - MIT1002_00368 0.39 +0.2 397,597 - MIT1002_00368 0.45 -0.3 397,603 + MIT1002_00368 0.45 -0.3 397,603 + MIT1002_00368 0.45 -2.1 397,741 + MIT1002_00368 0.53 -2.3 397,754 - MIT1002_00368 0.54 -1.4 397,914 - MIT1002_00368 0.63 +0.2 397,921 + MIT1002_00368 0.64 -0.1 398,041 - MIT1002_00368 0.71 +0.0 398,044 - MIT1002_00368 0.71 -0.2 398,052 - MIT1002_00368 0.72 -0.8 398,058 - MIT1002_00368 0.72 +0.3 398,060 + MIT1002_00368 0.72 +0.4 398,068 - MIT1002_00368 0.72 +0.7 398,068 - MIT1002_00368 0.72 +0.2 398,068 - MIT1002_00368 0.72 -0.0 398,197 - MIT1002_00368 0.80 +0.5 398,229 + MIT1002_00368 0.82 +0.7 398,247 + MIT1002_00368 0.83 +2.2 398,247 + MIT1002_00368 0.83 -2.4 398,253 - MIT1002_00368 0.83 -1.6 398,285 + MIT1002_00368 0.85 +0.9 398,307 - MIT1002_00368 0.87 -2.4 398,319 - MIT1002_00368 0.87 +0.2 398,345 - MIT1002_00368 0.89 +0.7 398,362 + MIT1002_00368 0.90 -1.0 398,362 + MIT1002_00368 0.90 -0.9 398,446 + -1.2 398,446 + +0.4 398,446 + +0.2 398,446 + -0.6 398,446 + -1.4 398,451 + +0.6 398,454 - +0.2 398,454 - +1.0 398,454 - +2.0 398,454 - +0.9 398,454 - +0.6 398,464 + +3.5 398,488 - +0.3 398,607 + MIT1002_00369 0.12 -0.6 398,630 - MIT1002_00369 0.16 -0.0 398,758 - MIT1002_00369 0.37 -0.3 398,774 + MIT1002_00369 0.39 -1.9 398,782 - MIT1002_00369 0.41 +2.1 398,987 - MIT1002_00369 0.74 +0.3 398,996 - MIT1002_00369 0.75 +0.5 399,090 - -0.2 399,095 - -1.5 399,143 + -0.7 399,143 + -2.0 399,143 + -2.4 399,143 + -0.5 399,143 + -0.4 399,143 + +0.6 399,143 + -0.4 399,143 + -1.9 399,143 + -3.3 399,143 + +0.1 399,143 + -0.2 399,143 + +0.1 399,143 + -1.7 399,143 + +0.0 399,143 + -1.0 399,143 + -1.0 399,151 - -2.6 399,151 - -2.6 399,151 - +0.3 399,151 - +1.7 399,151 - -0.5 399,151 - +0.5 399,151 - +1.5 399,151 - -0.2 399,151 - -1.6 399,151 - -1.3 399,151 - +0.6 399,151 - +0.3 399,151 - +1.4 399,151 - +0.5 399,151 - -0.2 399,151 - +2.1 399,151 - +11.1 399,179 + -0.3 399,179 + -0.4 399,181 + -2.5 399,182 - -0.4 399,203 + +0.4 399,224 - +1.6 399,307 + MIT1002_00370 0.12 -2.1 399,325 - MIT1002_00370 0.14 +0.6 399,380 + MIT1002_00370 0.22 +0.7 399,388 - MIT1002_00370 0.23 -0.8 399,423 - MIT1002_00370 0.27 -1.3 399,454 + MIT1002_00370 0.31 +1.2 399,460 + MIT1002_00370 0.32 -0.3 399,460 - MIT1002_00370 0.32 +0.4 399,469 + MIT1002_00370 0.33 -1.4 399,469 + MIT1002_00370 0.33 +0.9 399,477 - MIT1002_00370 0.34 +1.5 399,495 + MIT1002_00370 0.37 -1.2
Or see this region's nucleotide sequence