Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00364

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00363 and MIT1002_00364 are separated by 376 nucleotidesMIT1002_00364 and MIT1002_00365 are separated by 36 nucleotides MIT1002_00363: MIT1002_00363 - HTH-type transcriptional repressor CytR, at 390,996 to 392,000 _00363 MIT1002_00364: MIT1002_00364 - Glucose--fructose oxidoreductase precursor, at 392,377 to 393,531 _00364 MIT1002_00365: MIT1002_00365 - Inosose dehydratase, at 393,568 to 394,635 _00365 Position (kb) 392 393 394Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 391.381 kb on + strand, within MIT1002_00363at 391.475 kb on + strand, within MIT1002_00363at 391.478 kb on - strand, within MIT1002_00363at 391.478 kb on - strand, within MIT1002_00363at 391.514 kb on + strand, within MIT1002_00363at 391.535 kb on + strand, within MIT1002_00363at 391.543 kb on - strand, within MIT1002_00363at 391.562 kb on + strand, within MIT1002_00363at 391.569 kb on + strand, within MIT1002_00363at 391.597 kb on + strand, within MIT1002_00363at 391.618 kb on + strand, within MIT1002_00363at 391.640 kb on + strand, within MIT1002_00363at 391.648 kb on - strand, within MIT1002_00363at 391.671 kb on - strand, within MIT1002_00363at 391.811 kb on + strand, within MIT1002_00363at 391.811 kb on + strand, within MIT1002_00363at 391.847 kb on - strand, within MIT1002_00363at 391.849 kb on + strand, within MIT1002_00363at 391.883 kb on - strand, within MIT1002_00363at 391.883 kb on - strand, within MIT1002_00363at 391.939 kb on + strandat 391.939 kb on + strandat 391.972 kb on - strandat 392.035 kb on + strandat 392.035 kb on + strandat 392.057 kb on - strandat 392.059 kb on - strandat 392.061 kb on + strandat 392.061 kb on + strandat 392.061 kb on + strandat 392.069 kb on - strandat 392.069 kb on - strandat 392.216 kb on + strandat 392.226 kb on + strandat 392.226 kb on + strandat 392.229 kb on - strandat 392.232 kb on - strandat 392.234 kb on + strandat 392.234 kb on - strandat 392.234 kb on - strandat 392.234 kb on - strandat 392.234 kb on - strandat 392.234 kb on - strandat 392.234 kb on - strandat 392.234 kb on - strandat 392.234 kb on - strandat 392.234 kb on - strandat 392.236 kb on + strandat 392.242 kb on - strandat 392.247 kb on + strandat 392.247 kb on + strandat 392.247 kb on + strandat 392.247 kb on + strandat 392.255 kb on - strandat 392.351 kb on - strandat 392.356 kb on + strandat 392.439 kb on + strandat 392.452 kb on + strandat 392.458 kb on + strandat 392.460 kb on - strandat 392.461 kb on - strandat 392.468 kb on + strandat 392.550 kb on + strand, within MIT1002_00364at 392.550 kb on + strand, within MIT1002_00364at 392.680 kb on + strand, within MIT1002_00364at 392.710 kb on + strand, within MIT1002_00364at 392.710 kb on + strand, within MIT1002_00364at 392.734 kb on - strand, within MIT1002_00364at 392.757 kb on - strand, within MIT1002_00364at 392.773 kb on + strand, within MIT1002_00364at 392.775 kb on - strand, within MIT1002_00364at 392.778 kb on + strand, within MIT1002_00364at 392.779 kb on + strand, within MIT1002_00364at 392.787 kb on - strand, within MIT1002_00364at 392.834 kb on + strand, within MIT1002_00364at 392.881 kb on + strand, within MIT1002_00364at 392.920 kb on + strand, within MIT1002_00364at 392.920 kb on + strand, within MIT1002_00364at 392.933 kb on - strand, within MIT1002_00364at 392.967 kb on + strand, within MIT1002_00364at 393.015 kb on - strand, within MIT1002_00364at 393.020 kb on + strand, within MIT1002_00364at 393.020 kb on + strand, within MIT1002_00364at 393.020 kb on + strand, within MIT1002_00364at 393.028 kb on - strand, within MIT1002_00364at 393.039 kb on - strand, within MIT1002_00364at 393.054 kb on + strand, within MIT1002_00364at 393.081 kb on - strand, within MIT1002_00364at 393.086 kb on - strand, within MIT1002_00364at 393.091 kb on - strand, within MIT1002_00364at 393.138 kb on + strand, within MIT1002_00364at 393.146 kb on - strand, within MIT1002_00364at 393.146 kb on - strand, within MIT1002_00364at 393.146 kb on - strand, within MIT1002_00364at 393.148 kb on + strand, within MIT1002_00364at 393.184 kb on + strand, within MIT1002_00364at 393.201 kb on - strand, within MIT1002_00364at 393.222 kb on - strand, within MIT1002_00364at 393.236 kb on + strand, within MIT1002_00364at 393.241 kb on + strand, within MIT1002_00364at 393.249 kb on - strand, within MIT1002_00364at 393.261 kb on + strand, within MIT1002_00364at 393.261 kb on + strand, within MIT1002_00364at 393.261 kb on + strand, within MIT1002_00364at 393.261 kb on + strand, within MIT1002_00364at 393.261 kb on + strand, within MIT1002_00364at 393.261 kb on + strand, within MIT1002_00364at 393.269 kb on - strand, within MIT1002_00364at 393.269 kb on - strand, within MIT1002_00364at 393.284 kb on - strand, within MIT1002_00364at 393.291 kb on + strand, within MIT1002_00364at 393.294 kb on - strand, within MIT1002_00364at 393.294 kb on - strand, within MIT1002_00364at 393.294 kb on - strand, within MIT1002_00364at 393.314 kb on + strand, within MIT1002_00364at 393.314 kb on + strand, within MIT1002_00364at 393.339 kb on + strand, within MIT1002_00364at 393.412 kb on + strand, within MIT1002_00364at 393.613 kb on + strandat 393.626 kb on - strandat 393.676 kb on - strand, within MIT1002_00365at 393.683 kb on + strand, within MIT1002_00365at 393.712 kb on - strand, within MIT1002_00365at 393.718 kb on - strand, within MIT1002_00365at 393.827 kb on - strand, within MIT1002_00365at 393.840 kb on + strand, within MIT1002_00365at 393.880 kb on - strand, within MIT1002_00365at 393.886 kb on + strand, within MIT1002_00365at 393.894 kb on - strand, within MIT1002_00365at 393.894 kb on - strand, within MIT1002_00365at 393.933 kb on + strand, within MIT1002_00365at 393.933 kb on + strand, within MIT1002_00365at 393.941 kb on - strand, within MIT1002_00365at 394.014 kb on + strand, within MIT1002_00365at 394.150 kb on + strand, within MIT1002_00365at 394.153 kb on - strand, within MIT1002_00365at 394.158 kb on - strand, within MIT1002_00365at 394.189 kb on + strand, within MIT1002_00365at 394.259 kb on + strand, within MIT1002_00365at 394.299 kb on + strand, within MIT1002_00365at 394.424 kb on - strand, within MIT1002_00365at 394.436 kb on + strand, within MIT1002_00365at 394.444 kb on - strand, within MIT1002_00365at 394.444 kb on - strand, within MIT1002_00365at 394.449 kb on - strand, within MIT1002_00365at 394.458 kb on + strand, within MIT1002_00365at 394.468 kb on + strand, within MIT1002_00365at 394.468 kb on + strand, within MIT1002_00365at 394.468 kb on + strand, within MIT1002_00365at 394.472 kb on - strand, within MIT1002_00365at 394.476 kb on - strand, within MIT1002_00365at 394.476 kb on - strand, within MIT1002_00365at 394.476 kb on - strand, within MIT1002_00365at 394.476 kb on - strand, within MIT1002_00365at 394.476 kb on - strand, within MIT1002_00365at 394.476 kb on - strand, within MIT1002_00365at 394.476 kb on - strand, within MIT1002_00365at 394.487 kb on + strand, within MIT1002_00365at 394.487 kb on + strand, within MIT1002_00365at 394.495 kb on - strand, within MIT1002_00365at 394.508 kb on + strand, within MIT1002_00365at 394.508 kb on + strand, within MIT1002_00365at 394.508 kb on + strand, within MIT1002_00365at 394.508 kb on + strand, within MIT1002_00365at 394.508 kb on + strand, within MIT1002_00365at 394.508 kb on + strand, within MIT1002_00365at 394.508 kb on + strand, within MIT1002_00365at 394.508 kb on + strand, within MIT1002_00365at 394.516 kb on - strand, within MIT1002_00365

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5
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391,381 + MIT1002_00363 0.38 -0.3
391,475 + MIT1002_00363 0.48 +0.6
391,478 - MIT1002_00363 0.48 +0.3
391,478 - MIT1002_00363 0.48 +2.8
391,514 + MIT1002_00363 0.52 +0.3
391,535 + MIT1002_00363 0.54 +0.6
391,543 - MIT1002_00363 0.54 +2.0
391,562 + MIT1002_00363 0.56 +1.5
391,569 + MIT1002_00363 0.57 +0.8
391,597 + MIT1002_00363 0.60 +1.0
391,618 + MIT1002_00363 0.62 +0.8
391,640 + MIT1002_00363 0.64 -0.7
391,648 - MIT1002_00363 0.65 +1.1
391,671 - MIT1002_00363 0.67 +0.3
391,811 + MIT1002_00363 0.81 -0.3
391,811 + MIT1002_00363 0.81 -0.1
391,847 - MIT1002_00363 0.85 +0.6
391,849 + MIT1002_00363 0.85 -1.8
391,883 - MIT1002_00363 0.88 -0.9
391,883 - MIT1002_00363 0.88 +0.4
391,939 + -1.4
391,939 + -0.0
391,972 - -0.4
392,035 + +0.8
392,035 + +0.4
392,057 - +1.8
392,059 - +0.4
392,061 + -0.3
392,061 + +1.5
392,061 + +0.2
392,069 - -0.8
392,069 - +1.2
392,216 + -0.1
392,226 + +0.5
392,226 + +1.1
392,229 - +1.5
392,232 - +0.3
392,234 + +0.6
392,234 - +0.5
392,234 - +0.4
392,234 - -0.5
392,234 - -0.9
392,234 - -2.1
392,234 - +0.4
392,234 - -1.2
392,234 - +0.6
392,234 - -1.3
392,236 + +0.2
392,242 - -1.0
392,247 + -1.5
392,247 + +2.0
392,247 + -1.2
392,247 + -0.2
392,255 - -0.3
392,351 - +0.7
392,356 + +2.2
392,439 + -1.8
392,452 + -0.3
392,458 + -1.0
392,460 - +0.3
392,461 - -1.1
392,468 + +0.0
392,550 + MIT1002_00364 0.15 -1.0
392,550 + MIT1002_00364 0.15 +1.5
392,680 + MIT1002_00364 0.26 -0.1
392,710 + MIT1002_00364 0.29 -0.3
392,710 + MIT1002_00364 0.29 +0.3
392,734 - MIT1002_00364 0.31 +1.4
392,757 - MIT1002_00364 0.33 +3.5
392,773 + MIT1002_00364 0.34 -1.3
392,775 - MIT1002_00364 0.34 -0.2
392,778 + MIT1002_00364 0.35 -1.1
392,779 + MIT1002_00364 0.35 -1.3
392,787 - MIT1002_00364 0.35 +2.4
392,834 + MIT1002_00364 0.40 +2.7
392,881 + MIT1002_00364 0.44 +0.7
392,920 + MIT1002_00364 0.47 -0.1
392,920 + MIT1002_00364 0.47 +1.3
392,933 - MIT1002_00364 0.48 +0.3
392,967 + MIT1002_00364 0.51 -3.4
393,015 - MIT1002_00364 0.55 +2.2
393,020 + MIT1002_00364 0.56 -0.6
393,020 + MIT1002_00364 0.56 +5.0
393,020 + MIT1002_00364 0.56 +0.9
393,028 - MIT1002_00364 0.56 -0.6
393,039 - MIT1002_00364 0.57 +0.3
393,054 + MIT1002_00364 0.59 +0.6
393,081 - MIT1002_00364 0.61 +0.5
393,086 - MIT1002_00364 0.61 -1.2
393,091 - MIT1002_00364 0.62 -1.7
393,138 + MIT1002_00364 0.66 +1.5
393,146 - MIT1002_00364 0.67 -2.5
393,146 - MIT1002_00364 0.67 +1.3
393,146 - MIT1002_00364 0.67 -1.9
393,148 + MIT1002_00364 0.67 -0.3
393,184 + MIT1002_00364 0.70 -0.9
393,201 - MIT1002_00364 0.71 +1.5
393,222 - MIT1002_00364 0.73 +0.2
393,236 + MIT1002_00364 0.74 -0.2
393,241 + MIT1002_00364 0.75 +0.6
393,249 - MIT1002_00364 0.75 -0.2
393,261 + MIT1002_00364 0.77 +0.9
393,261 + MIT1002_00364 0.77 -1.2
393,261 + MIT1002_00364 0.77 +0.8
393,261 + MIT1002_00364 0.77 -0.4
393,261 + MIT1002_00364 0.77 +2.1
393,261 + MIT1002_00364 0.77 -0.3
393,269 - MIT1002_00364 0.77 +0.2
393,269 - MIT1002_00364 0.77 -0.2
393,284 - MIT1002_00364 0.79 -0.8
393,291 + MIT1002_00364 0.79 +0.5
393,294 - MIT1002_00364 0.79 +1.0
393,294 - MIT1002_00364 0.79 -0.4
393,294 - MIT1002_00364 0.79 +1.2
393,314 + MIT1002_00364 0.81 -0.5
393,314 + MIT1002_00364 0.81 -1.3
393,339 + MIT1002_00364 0.83 +0.4
393,412 + MIT1002_00364 0.90 -0.4
393,613 + -1.5
393,626 - -0.1
393,676 - MIT1002_00365 0.10 -1.5
393,683 + MIT1002_00365 0.11 +0.1
393,712 - MIT1002_00365 0.13 +0.2
393,718 - MIT1002_00365 0.14 +2.1
393,827 - MIT1002_00365 0.24 +1.2
393,840 + MIT1002_00365 0.25 -0.5
393,880 - MIT1002_00365 0.29 +0.2
393,886 + MIT1002_00365 0.30 +1.2
393,894 - MIT1002_00365 0.31 -0.4
393,894 - MIT1002_00365 0.31 -0.4
393,933 + MIT1002_00365 0.34 +0.3
393,933 + MIT1002_00365 0.34 -1.0
393,941 - MIT1002_00365 0.35 +0.0
394,014 + MIT1002_00365 0.42 -1.3
394,150 + MIT1002_00365 0.54 -0.7
394,153 - MIT1002_00365 0.55 -0.0
394,158 - MIT1002_00365 0.55 +0.0
394,189 + MIT1002_00365 0.58 -2.1
394,259 + MIT1002_00365 0.65 +0.5
394,299 + MIT1002_00365 0.68 -1.5
394,424 - MIT1002_00365 0.80 -1.4
394,436 + MIT1002_00365 0.81 +0.9
394,444 - MIT1002_00365 0.82 -0.5
394,444 - MIT1002_00365 0.82 +1.6
394,449 - MIT1002_00365 0.82 -0.3
394,458 + MIT1002_00365 0.83 -0.6
394,468 + MIT1002_00365 0.84 -0.7
394,468 + MIT1002_00365 0.84 -0.3
394,468 + MIT1002_00365 0.84 -0.3
394,472 - MIT1002_00365 0.85 +0.6
394,476 - MIT1002_00365 0.85 +0.8
394,476 - MIT1002_00365 0.85 -0.5
394,476 - MIT1002_00365 0.85 -0.8
394,476 - MIT1002_00365 0.85 -1.9
394,476 - MIT1002_00365 0.85 -0.3
394,476 - MIT1002_00365 0.85 -0.8
394,476 - MIT1002_00365 0.85 -0.6
394,487 + MIT1002_00365 0.86 -1.8
394,487 + MIT1002_00365 0.86 -0.4
394,495 - MIT1002_00365 0.87 -0.3
394,508 + MIT1002_00365 0.88 -1.0
394,508 + MIT1002_00365 0.88 -0.2
394,508 + MIT1002_00365 0.88 -0.2
394,508 + MIT1002_00365 0.88 +1.1
394,508 + MIT1002_00365 0.88 +1.5
394,508 + MIT1002_00365 0.88 -0.4
394,508 + MIT1002_00365 0.88 +1.1
394,508 + MIT1002_00365 0.88 -0.4
394,516 - MIT1002_00365 0.89 -0.3

Or see this region's nucleotide sequence