Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00337

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00335 and MIT1002_00336 are separated by 446 nucleotidesMIT1002_00336 and MIT1002_00337 are separated by 155 nucleotidesMIT1002_00337 and MIT1002_00338 are separated by 157 nucleotidesMIT1002_00338 and MIT1002_00339 are separated by 9 nucleotides MIT1002_00335: MIT1002_00335 - hypothetical protein, at 360,061 to 360,432 _00335 MIT1002_00336: MIT1002_00336 - hypothetical protein, at 360,879 to 361,034 _00336 MIT1002_00337: MIT1002_00337 - Inner membrane transport protein YbaT, at 361,190 to 362,515 _00337 MIT1002_00338: MIT1002_00338 - Copper resistance protein B precursor, at 362,673 to 363,419 _00338 MIT1002_00339: MIT1002_00339 - Copper resistance protein A precursor, at 363,429 to 365,243 _00339 Position (kb) 361 362 363Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 360.207 kb on - strand, within MIT1002_00335at 360.220 kb on + strand, within MIT1002_00335at 360.239 kb on - strand, within MIT1002_00335at 360.271 kb on - strand, within MIT1002_00335at 360.288 kb on + strand, within MIT1002_00335at 360.340 kb on - strand, within MIT1002_00335at 360.423 kb on + strandat 360.431 kb on - strandat 360.433 kb on + strandat 360.440 kb on - strandat 360.440 kb on - strandat 360.440 kb on - strandat 360.440 kb on - strandat 360.440 kb on - strandat 360.440 kb on - strandat 360.440 kb on - strandat 360.442 kb on + strandat 360.450 kb on - strandat 360.532 kb on + strandat 360.558 kb on + strandat 360.558 kb on + strandat 360.566 kb on - strandat 360.678 kb on - strandat 360.678 kb on - strandat 360.692 kb on + strandat 360.699 kb on + strandat 360.728 kb on + strandat 360.730 kb on + strandat 360.746 kb on - strandat 360.774 kb on + strandat 360.787 kb on - strandat 360.830 kb on - strandat 360.874 kb on + strandat 360.929 kb on - strand, within MIT1002_00336at 360.945 kb on - strand, within MIT1002_00336at 360.948 kb on - strand, within MIT1002_00336at 360.953 kb on + strand, within MIT1002_00336at 360.955 kb on + strand, within MIT1002_00336at 361.009 kb on + strand, within MIT1002_00336at 361.030 kb on + strandat 361.071 kb on - strandat 361.105 kb on - strandat 361.144 kb on + strandat 361.229 kb on - strandat 361.361 kb on + strand, within MIT1002_00337at 361.361 kb on + strand, within MIT1002_00337at 361.361 kb on + strand, within MIT1002_00337at 361.369 kb on - strand, within MIT1002_00337at 361.369 kb on - strand, within MIT1002_00337at 361.369 kb on - strand, within MIT1002_00337at 361.382 kb on - strand, within MIT1002_00337at 361.401 kb on + strand, within MIT1002_00337at 361.411 kb on + strand, within MIT1002_00337at 361.421 kb on - strand, within MIT1002_00337at 361.457 kb on + strand, within MIT1002_00337at 361.457 kb on + strand, within MIT1002_00337at 361.465 kb on - strand, within MIT1002_00337at 361.470 kb on - strand, within MIT1002_00337at 361.612 kb on - strand, within MIT1002_00337at 361.614 kb on + strand, within MIT1002_00337at 361.677 kb on + strand, within MIT1002_00337at 361.685 kb on - strand, within MIT1002_00337at 361.698 kb on + strand, within MIT1002_00337at 361.706 kb on - strand, within MIT1002_00337at 361.917 kb on - strand, within MIT1002_00337at 361.962 kb on - strand, within MIT1002_00337at 361.994 kb on - strand, within MIT1002_00337at 362.124 kb on + strand, within MIT1002_00337at 362.124 kb on + strand, within MIT1002_00337at 362.132 kb on - strand, within MIT1002_00337at 362.132 kb on - strand, within MIT1002_00337at 362.132 kb on - strand, within MIT1002_00337at 362.133 kb on - strand, within MIT1002_00337at 362.241 kb on + strand, within MIT1002_00337at 362.290 kb on + strand, within MIT1002_00337at 362.308 kb on - strand, within MIT1002_00337at 362.311 kb on - strand, within MIT1002_00337at 362.344 kb on - strand, within MIT1002_00337at 362.453 kb on + strandat 362.466 kb on + strandat 362.466 kb on + strandat 362.526 kb on + strandat 362.526 kb on + strandat 362.640 kb on - strandat 362.691 kb on + strandat 362.700 kb on - strandat 362.705 kb on - strandat 362.739 kb on - strandat 362.762 kb on - strand, within MIT1002_00338at 362.787 kb on + strand, within MIT1002_00338at 362.806 kb on + strand, within MIT1002_00338at 362.884 kb on - strand, within MIT1002_00338at 362.978 kb on + strand, within MIT1002_00338at 363.017 kb on - strand, within MIT1002_00338at 363.046 kb on - strand, within MIT1002_00338at 363.056 kb on - strand, within MIT1002_00338at 363.056 kb on - strand, within MIT1002_00338at 363.056 kb on - strand, within MIT1002_00338at 363.096 kb on + strand, within MIT1002_00338at 363.130 kb on + strand, within MIT1002_00338at 363.130 kb on + strand, within MIT1002_00338at 363.138 kb on - strand, within MIT1002_00338at 363.138 kb on - strand, within MIT1002_00338at 363.138 kb on - strand, within MIT1002_00338at 363.140 kb on + strand, within MIT1002_00338at 363.158 kb on - strand, within MIT1002_00338at 363.174 kb on + strand, within MIT1002_00338at 363.218 kb on + strand, within MIT1002_00338at 363.244 kb on + strand, within MIT1002_00338at 363.251 kb on + strand, within MIT1002_00338at 363.252 kb on - strand, within MIT1002_00338at 363.252 kb on - strand, within MIT1002_00338at 363.259 kb on - strand, within MIT1002_00338at 363.357 kb on + strandat 363.375 kb on + strandat 363.388 kb on - strandat 363.403 kb on + strandat 363.435 kb on + strandat 363.445 kb on + strandat 363.450 kb on + strandat 363.450 kb on + strandat 363.469 kb on + strandat 363.471 kb on + strandat 363.500 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5
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360,207 - MIT1002_00335 0.39 -1.1
360,220 + MIT1002_00335 0.43 +2.0
360,239 - MIT1002_00335 0.48 -0.1
360,271 - MIT1002_00335 0.56 -0.5
360,288 + MIT1002_00335 0.61 +0.1
360,340 - MIT1002_00335 0.75 +0.0
360,423 + +1.1
360,431 - -0.2
360,433 + -1.4
360,440 - -1.0
360,440 - -0.4
360,440 - +0.8
360,440 - +1.0
360,440 - +1.2
360,440 - +0.6
360,440 - -0.5
360,442 + -0.8
360,450 - -1.4
360,532 + -0.5
360,558 + +0.1
360,558 + -2.2
360,566 - +1.3
360,678 - +1.4
360,678 - +0.4
360,692 + -0.8
360,699 + +0.1
360,728 + +0.0
360,730 + -0.1
360,746 - -2.1
360,774 + +0.7
360,787 - +0.9
360,830 - -0.8
360,874 + +0.1
360,929 - MIT1002_00336 0.32 +1.0
360,945 - MIT1002_00336 0.42 -1.6
360,948 - MIT1002_00336 0.44 +0.9
360,953 + MIT1002_00336 0.47 -1.0
360,955 + MIT1002_00336 0.49 +0.5
361,009 + MIT1002_00336 0.83 +0.2
361,030 + +0.9
361,071 - +0.1
361,105 - -1.4
361,144 + +1.3
361,229 - +1.3
361,361 + MIT1002_00337 0.13 -0.2
361,361 + MIT1002_00337 0.13 +0.3
361,361 + MIT1002_00337 0.13 +0.5
361,369 - MIT1002_00337 0.13 -1.0
361,369 - MIT1002_00337 0.13 -0.3
361,369 - MIT1002_00337 0.13 +0.0
361,382 - MIT1002_00337 0.14 -2.3
361,401 + MIT1002_00337 0.16 -1.5
361,411 + MIT1002_00337 0.17 -1.0
361,421 - MIT1002_00337 0.17 -0.6
361,457 + MIT1002_00337 0.20 +0.4
361,457 + MIT1002_00337 0.20 +0.2
361,465 - MIT1002_00337 0.21 +0.2
361,470 - MIT1002_00337 0.21 +0.5
361,612 - MIT1002_00337 0.32 -1.0
361,614 + MIT1002_00337 0.32 -1.4
361,677 + MIT1002_00337 0.37 -0.0
361,685 - MIT1002_00337 0.37 -1.9
361,698 + MIT1002_00337 0.38 -0.7
361,706 - MIT1002_00337 0.39 +1.6
361,917 - MIT1002_00337 0.55 -3.6
361,962 - MIT1002_00337 0.58 -1.8
361,994 - MIT1002_00337 0.61 -1.0
362,124 + MIT1002_00337 0.70 -0.1
362,124 + MIT1002_00337 0.70 -0.2
362,132 - MIT1002_00337 0.71 +0.5
362,132 - MIT1002_00337 0.71 -1.2
362,132 - MIT1002_00337 0.71 -0.2
362,133 - MIT1002_00337 0.71 +0.3
362,241 + MIT1002_00337 0.79 -0.4
362,290 + MIT1002_00337 0.83 -0.6
362,308 - MIT1002_00337 0.84 -0.1
362,311 - MIT1002_00337 0.85 -0.3
362,344 - MIT1002_00337 0.87 +0.7
362,453 + -1.6
362,466 + +2.6
362,466 + -0.4
362,526 + +2.4
362,526 + -1.6
362,640 - -0.7
362,691 + -0.9
362,700 - -1.7
362,705 - +0.1
362,739 - -1.0
362,762 - MIT1002_00338 0.12 +0.1
362,787 + MIT1002_00338 0.15 +0.6
362,806 + MIT1002_00338 0.18 +0.4
362,884 - MIT1002_00338 0.28 +2.8
362,978 + MIT1002_00338 0.41 -2.0
363,017 - MIT1002_00338 0.46 +0.7
363,046 - MIT1002_00338 0.50 -2.1
363,056 - MIT1002_00338 0.51 -1.4
363,056 - MIT1002_00338 0.51 -0.5
363,056 - MIT1002_00338 0.51 -2.7
363,096 + MIT1002_00338 0.57 +1.3
363,130 + MIT1002_00338 0.61 -1.6
363,130 + MIT1002_00338 0.61 +0.3
363,138 - MIT1002_00338 0.62 -0.1
363,138 - MIT1002_00338 0.62 +1.3
363,138 - MIT1002_00338 0.62 +2.1
363,140 + MIT1002_00338 0.63 -2.6
363,158 - MIT1002_00338 0.65 -1.9
363,174 + MIT1002_00338 0.67 +1.2
363,218 + MIT1002_00338 0.73 -0.5
363,244 + MIT1002_00338 0.76 +1.9
363,251 + MIT1002_00338 0.77 +1.5
363,252 - MIT1002_00338 0.78 +3.7
363,252 - MIT1002_00338 0.78 -1.9
363,259 - MIT1002_00338 0.78 -1.0
363,357 + -0.3
363,375 + -0.1
363,388 - -2.4
363,403 + -0.4
363,435 + +1.3
363,445 + -0.6
363,450 + -2.4
363,450 + -1.4
363,469 + +1.0
363,471 + -0.0
363,500 + +0.6

Or see this region's nucleotide sequence