Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00296

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00295 and MIT1002_00296 are separated by 44 nucleotidesMIT1002_00296 and MIT1002_00297 are separated by 2 nucleotides MIT1002_00295: MIT1002_00295 - hypothetical protein, at 318,274 to 318,630 _00295 MIT1002_00296: MIT1002_00296 - Cation efflux system protein CzcC, at 318,675 to 319,955 _00296 MIT1002_00297: MIT1002_00297 - Cation efflux system protein CzcB, at 319,958 to 321,139 _00297 Position (kb) 318 319 320Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 317.746 kb on + strandat 317.748 kb on + strandat 317.748 kb on + strandat 317.754 kb on - strandat 317.756 kb on - strandat 317.800 kb on - strandat 317.815 kb on + strandat 317.822 kb on - strandat 317.838 kb on - strandat 317.843 kb on + strandat 317.851 kb on - strandat 317.889 kb on + strandat 317.901 kb on - strandat 317.937 kb on - strandat 317.943 kb on - strandat 317.959 kb on + strandat 317.959 kb on + strandat 317.967 kb on - strandat 318.000 kb on - strandat 318.000 kb on - strandat 318.029 kb on + strandat 318.033 kb on - strandat 318.037 kb on - strandat 318.061 kb on + strandat 318.069 kb on - strandat 318.220 kb on - strandat 318.267 kb on - strandat 318.336 kb on - strand, within MIT1002_00295at 318.354 kb on + strand, within MIT1002_00295at 318.443 kb on - strand, within MIT1002_00295at 318.443 kb on - strand, within MIT1002_00295at 318.475 kb on - strand, within MIT1002_00295at 318.587 kb on - strand, within MIT1002_00295at 318.663 kb on + strandat 318.671 kb on - strandat 318.728 kb on - strandat 318.744 kb on + strandat 318.844 kb on - strand, within MIT1002_00296at 318.884 kb on + strand, within MIT1002_00296at 318.936 kb on - strand, within MIT1002_00296at 319.024 kb on + strand, within MIT1002_00296at 319.053 kb on - strand, within MIT1002_00296at 319.082 kb on - strand, within MIT1002_00296at 319.116 kb on + strand, within MIT1002_00296at 319.118 kb on + strand, within MIT1002_00296at 319.126 kb on - strand, within MIT1002_00296at 319.145 kb on - strand, within MIT1002_00296at 319.146 kb on + strand, within MIT1002_00296at 319.146 kb on + strand, within MIT1002_00296at 319.161 kb on - strand, within MIT1002_00296at 319.176 kb on - strand, within MIT1002_00296at 319.223 kb on + strand, within MIT1002_00296at 319.226 kb on - strand, within MIT1002_00296at 319.231 kb on - strand, within MIT1002_00296at 319.236 kb on - strand, within MIT1002_00296at 319.270 kb on + strand, within MIT1002_00296at 319.278 kb on - strand, within MIT1002_00296at 319.295 kb on - strand, within MIT1002_00296at 319.311 kb on - strand, within MIT1002_00296at 319.313 kb on + strand, within MIT1002_00296at 319.322 kb on + strand, within MIT1002_00296at 319.447 kb on + strand, within MIT1002_00296at 319.497 kb on - strand, within MIT1002_00296at 319.502 kb on - strand, within MIT1002_00296at 319.502 kb on - strand, within MIT1002_00296at 319.502 kb on - strand, within MIT1002_00296at 319.523 kb on + strand, within MIT1002_00296at 319.531 kb on - strand, within MIT1002_00296at 319.533 kb on + strand, within MIT1002_00296at 319.601 kb on + strand, within MIT1002_00296at 319.609 kb on - strand, within MIT1002_00296at 319.617 kb on - strand, within MIT1002_00296at 319.719 kb on + strand, within MIT1002_00296at 319.727 kb on - strand, within MIT1002_00296at 319.727 kb on - strand, within MIT1002_00296at 319.804 kb on - strand, within MIT1002_00296at 319.824 kb on - strand, within MIT1002_00296at 319.881 kb on - strandat 319.881 kb on - strandat 319.883 kb on + strandat 319.883 kb on + strandat 319.883 kb on + strandat 319.891 kb on - strandat 319.891 kb on - strandat 319.896 kb on - strandat 319.936 kb on + strandat 319.957 kb on - strandat 320.123 kb on + strand, within MIT1002_00297at 320.185 kb on - strand, within MIT1002_00297at 320.223 kb on + strand, within MIT1002_00297at 320.254 kb on + strand, within MIT1002_00297at 320.262 kb on - strand, within MIT1002_00297at 320.288 kb on - strand, within MIT1002_00297at 320.337 kb on + strand, within MIT1002_00297at 320.393 kb on - strand, within MIT1002_00297at 320.396 kb on - strand, within MIT1002_00297at 320.458 kb on - strand, within MIT1002_00297at 320.487 kb on - strand, within MIT1002_00297at 320.487 kb on - strand, within MIT1002_00297at 320.489 kb on - strand, within MIT1002_00297at 320.532 kb on - strand, within MIT1002_00297at 320.628 kb on + strand, within MIT1002_00297at 320.647 kb on - strand, within MIT1002_00297at 320.732 kb on - strand, within MIT1002_00297at 320.739 kb on + strand, within MIT1002_00297at 320.739 kb on + strand, within MIT1002_00297at 320.747 kb on - strand, within MIT1002_00297at 320.747 kb on - strand, within MIT1002_00297at 320.747 kb on - strand, within MIT1002_00297at 320.808 kb on + strand, within MIT1002_00297at 320.816 kb on - strand, within MIT1002_00297at 320.817 kb on - strand, within MIT1002_00297at 320.842 kb on + strand, within MIT1002_00297at 320.890 kb on + strand, within MIT1002_00297

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5
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317,746 + -0.4
317,748 + -1.1
317,748 + -0.4
317,754 - -0.6
317,756 - -2.9
317,800 - -1.8
317,815 + +0.1
317,822 - +0.7
317,838 - +1.9
317,843 + +0.1
317,851 - -2.1
317,889 + -0.3
317,901 - -0.3
317,937 - -0.5
317,943 - +0.6
317,959 + -0.4
317,959 + +0.7
317,967 - +1.9
318,000 - +0.3
318,000 - -0.6
318,029 + -1.0
318,033 - -1.2
318,037 - +1.3
318,061 + +0.4
318,069 - -0.6
318,220 - -0.0
318,267 - -0.8
318,336 - MIT1002_00295 0.17 -0.1
318,354 + MIT1002_00295 0.22 +1.5
318,443 - MIT1002_00295 0.47 -1.1
318,443 - MIT1002_00295 0.47 -0.4
318,475 - MIT1002_00295 0.56 -0.7
318,587 - MIT1002_00295 0.88 -3.0
318,663 + -0.1
318,671 - -0.3
318,728 - -0.9
318,744 + +1.0
318,844 - MIT1002_00296 0.13 +1.2
318,884 + MIT1002_00296 0.16 +1.2
318,936 - MIT1002_00296 0.20 -2.8
319,024 + MIT1002_00296 0.27 -1.9
319,053 - MIT1002_00296 0.30 -0.3
319,082 - MIT1002_00296 0.32 +1.3
319,116 + MIT1002_00296 0.34 -0.2
319,118 + MIT1002_00296 0.35 +0.8
319,126 - MIT1002_00296 0.35 -1.5
319,145 - MIT1002_00296 0.37 -0.1
319,146 + MIT1002_00296 0.37 -0.4
319,146 + MIT1002_00296 0.37 +1.2
319,161 - MIT1002_00296 0.38 -1.0
319,176 - MIT1002_00296 0.39 -1.8
319,223 + MIT1002_00296 0.43 +0.0
319,226 - MIT1002_00296 0.43 +0.8
319,231 - MIT1002_00296 0.43 +1.2
319,236 - MIT1002_00296 0.44 +0.0
319,270 + MIT1002_00296 0.46 +1.9
319,278 - MIT1002_00296 0.47 +2.1
319,295 - MIT1002_00296 0.48 +0.3
319,311 - MIT1002_00296 0.50 +0.7
319,313 + MIT1002_00296 0.50 +1.2
319,322 + MIT1002_00296 0.51 -0.7
319,447 + MIT1002_00296 0.60 -0.7
319,497 - MIT1002_00296 0.64 -0.1
319,502 - MIT1002_00296 0.65 -1.7
319,502 - MIT1002_00296 0.65 -2.0
319,502 - MIT1002_00296 0.65 +0.9
319,523 + MIT1002_00296 0.66 +1.2
319,531 - MIT1002_00296 0.67 +1.2
319,533 + MIT1002_00296 0.67 -2.6
319,601 + MIT1002_00296 0.72 -0.2
319,609 - MIT1002_00296 0.73 -0.1
319,617 - MIT1002_00296 0.74 +1.6
319,719 + MIT1002_00296 0.81 +1.3
319,727 - MIT1002_00296 0.82 +0.2
319,727 - MIT1002_00296 0.82 -1.1
319,804 - MIT1002_00296 0.88 +0.6
319,824 - MIT1002_00296 0.90 +0.2
319,881 - -1.3
319,881 - -2.5
319,883 + +0.6
319,883 + -0.6
319,883 + +0.3
319,891 - +0.3
319,891 - +2.5
319,896 - +0.2
319,936 + -1.8
319,957 - -0.1
320,123 + MIT1002_00297 0.14 -0.0
320,185 - MIT1002_00297 0.19 -0.6
320,223 + MIT1002_00297 0.22 -0.3
320,254 + MIT1002_00297 0.25 +2.3
320,262 - MIT1002_00297 0.26 +1.3
320,288 - MIT1002_00297 0.28 -1.0
320,337 + MIT1002_00297 0.32 -0.9
320,393 - MIT1002_00297 0.37 -0.7
320,396 - MIT1002_00297 0.37 +0.2
320,458 - MIT1002_00297 0.42 -1.2
320,487 - MIT1002_00297 0.45 +0.9
320,487 - MIT1002_00297 0.45 -1.1
320,489 - MIT1002_00297 0.45 +1.0
320,532 - MIT1002_00297 0.49 -1.6
320,628 + MIT1002_00297 0.57 +1.3
320,647 - MIT1002_00297 0.58 -0.3
320,732 - MIT1002_00297 0.65 +1.0
320,739 + MIT1002_00297 0.66 +0.4
320,739 + MIT1002_00297 0.66 -0.8
320,747 - MIT1002_00297 0.67 -1.4
320,747 - MIT1002_00297 0.67 -1.1
320,747 - MIT1002_00297 0.67 -1.2
320,808 + MIT1002_00297 0.72 -0.8
320,816 - MIT1002_00297 0.73 +0.7
320,817 - MIT1002_00297 0.73 -0.3
320,842 + MIT1002_00297 0.75 -1.8
320,890 + MIT1002_00297 0.79 +0.5

Or see this region's nucleotide sequence