Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00271 and MIT1002_00272 are separated by 14 nucleotides MIT1002_00272 and MIT1002_00273 overlap by 4 nucleotides MIT1002_00273 and MIT1002_00274 are separated by 1 nucleotides
MIT1002_00271: MIT1002_00271 - hypothetical protein, at 297,120 to 298,343
_00271
MIT1002_00272: MIT1002_00272 - Hydrogenase 2 maturation protease, at 298,358 to 298,912
_00272
MIT1002_00273: MIT1002_00273 - hypothetical protein, at 298,909 to 299,343
_00273
MIT1002_00274: MIT1002_00274 - Uptake hydrogenase small subunit precursor, at 299,345 to 300,343
_00274
Position (kb) 298
299
300 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 297.948 kb on + strand, within MIT1002_00271 at 297.955 kb on + strand, within MIT1002_00271 at 297.955 kb on + strand, within MIT1002_00271 at 298.034 kb on - strand, within MIT1002_00271 at 298.034 kb on - strand, within MIT1002_00271 at 298.126 kb on + strand, within MIT1002_00271 at 298.171 kb on + strand, within MIT1002_00271 at 298.224 kb on + strand at 298.248 kb on - strand at 298.248 kb on - strand at 298.248 kb on - strand at 298.332 kb on + strand at 298.347 kb on + strand at 298.445 kb on - strand, within MIT1002_00272 at 298.484 kb on + strand, within MIT1002_00272 at 298.492 kb on - strand, within MIT1002_00272 at 298.503 kb on - strand, within MIT1002_00272 at 298.528 kb on + strand, within MIT1002_00272 at 298.550 kb on + strand, within MIT1002_00272 at 298.569 kb on - strand, within MIT1002_00272 at 298.606 kb on - strand, within MIT1002_00272 at 298.676 kb on + strand, within MIT1002_00272 at 298.734 kb on + strand, within MIT1002_00272 at 298.818 kb on - strand, within MIT1002_00272 at 298.869 kb on + strand at 298.901 kb on - strand at 298.969 kb on + strand, within MIT1002_00273 at 298.998 kb on - strand, within MIT1002_00273 at 299.098 kb on - strand, within MIT1002_00273 at 299.100 kb on + strand, within MIT1002_00273 at 299.108 kb on - strand, within MIT1002_00273 at 299.108 kb on - strand, within MIT1002_00273 at 299.124 kb on + strand, within MIT1002_00273 at 299.126 kb on + strand, within MIT1002_00273 at 299.161 kb on - strand, within MIT1002_00273 at 299.225 kb on - strand, within MIT1002_00273 at 299.236 kb on - strand, within MIT1002_00273 at 299.262 kb on - strand, within MIT1002_00273 at 299.276 kb on + strand, within MIT1002_00273 at 299.282 kb on - strand, within MIT1002_00273 at 299.329 kb on + strand at 299.329 kb on + strand at 299.482 kb on - strand, within MIT1002_00274 at 299.521 kb on + strand, within MIT1002_00274 at 299.531 kb on + strand, within MIT1002_00274 at 299.531 kb on + strand, within MIT1002_00274 at 299.531 kb on + strand, within MIT1002_00274 at 299.534 kb on - strand, within MIT1002_00274 at 299.554 kb on - strand, within MIT1002_00274 at 299.564 kb on - strand, within MIT1002_00274 at 299.658 kb on - strand, within MIT1002_00274 at 299.658 kb on - strand, within MIT1002_00274 at 299.724 kb on + strand, within MIT1002_00274 at 299.724 kb on + strand, within MIT1002_00274 at 299.727 kb on - strand, within MIT1002_00274 at 299.741 kb on - strand, within MIT1002_00274 at 299.809 kb on + strand, within MIT1002_00274 at 299.844 kb on - strand, within MIT1002_00274 at 299.917 kb on - strand, within MIT1002_00274 at 299.927 kb on - strand, within MIT1002_00274 at 300.034 kb on + strand, within MIT1002_00274 at 300.065 kb on - strand, within MIT1002_00274 at 300.198 kb on - strand, within MIT1002_00274 at 300.269 kb on + strand at 300.269 kb on + strand at 300.284 kb on - strand at 300.295 kb on + strand at 300.312 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5 remove 297,948 + MIT1002_00271 0.68 +0.2 297,955 + MIT1002_00271 0.68 -0.9 297,955 + MIT1002_00271 0.68 +1.1 298,034 - MIT1002_00271 0.75 +0.0 298,034 - MIT1002_00271 0.75 -2.2 298,126 + MIT1002_00271 0.82 +0.5 298,171 + MIT1002_00271 0.86 +3.4 298,224 + +0.7 298,248 - +0.4 298,248 - +1.4 298,248 - +1.7 298,332 + +0.3 298,347 + +0.3 298,445 - MIT1002_00272 0.16 -1.9 298,484 + MIT1002_00272 0.23 -0.7 298,492 - MIT1002_00272 0.24 +0.0 298,503 - MIT1002_00272 0.26 +0.6 298,528 + MIT1002_00272 0.31 -1.6 298,550 + MIT1002_00272 0.35 +1.0 298,569 - MIT1002_00272 0.38 +0.8 298,606 - MIT1002_00272 0.45 -1.0 298,676 + MIT1002_00272 0.57 +2.3 298,734 + MIT1002_00272 0.68 -0.9 298,818 - MIT1002_00272 0.83 +1.5 298,869 + +1.7 298,901 - +0.5 298,969 + MIT1002_00273 0.14 +1.0 298,998 - MIT1002_00273 0.20 -0.1 299,098 - MIT1002_00273 0.43 -2.8 299,100 + MIT1002_00273 0.44 +1.7 299,108 - MIT1002_00273 0.46 +1.1 299,108 - MIT1002_00273 0.46 +1.4 299,124 + MIT1002_00273 0.49 +2.0 299,126 + MIT1002_00273 0.50 +0.3 299,161 - MIT1002_00273 0.58 -0.4 299,225 - MIT1002_00273 0.73 -1.9 299,236 - MIT1002_00273 0.75 +0.9 299,262 - MIT1002_00273 0.81 -1.1 299,276 + MIT1002_00273 0.84 -0.4 299,282 - MIT1002_00273 0.86 -2.5 299,329 + -0.0 299,329 + +1.3 299,482 - MIT1002_00274 0.14 -0.7 299,521 + MIT1002_00274 0.18 -2.8 299,531 + MIT1002_00274 0.19 -0.7 299,531 + MIT1002_00274 0.19 -1.6 299,531 + MIT1002_00274 0.19 +1.7 299,534 - MIT1002_00274 0.19 -0.6 299,554 - MIT1002_00274 0.21 +0.2 299,564 - MIT1002_00274 0.22 -1.3 299,658 - MIT1002_00274 0.31 -0.3 299,658 - MIT1002_00274 0.31 -0.6 299,724 + MIT1002_00274 0.38 -1.0 299,724 + MIT1002_00274 0.38 +0.2 299,727 - MIT1002_00274 0.38 -0.2 299,741 - MIT1002_00274 0.40 -0.2 299,809 + MIT1002_00274 0.46 +1.7 299,844 - MIT1002_00274 0.50 -2.7 299,917 - MIT1002_00274 0.57 +0.4 299,927 - MIT1002_00274 0.58 -4.7 300,034 + MIT1002_00274 0.69 +0.6 300,065 - MIT1002_00274 0.72 +0.4 300,198 - MIT1002_00274 0.85 +0.5 300,269 + +0.7 300,269 + -0.4 300,284 - -0.9 300,295 + -0.5 300,312 - -1.6
Or see this region's nucleotide sequence