Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00154 and MIT1002_00155 overlap by 8 nucleotides MIT1002_00155 and MIT1002_00156 are separated by 168 nucleotides MIT1002_00156 and MIT1002_00157 are separated by 20 nucleotides
MIT1002_00154: MIT1002_00154 - Serine acetyltransferase, at 170,797 to 171,609
_00154
MIT1002_00155: MIT1002_00155 - Diguanylate cyclase DosC, at 171,602 to 173,110
_00155
MIT1002_00156: MIT1002_00156 - Flavin mononucleotide phosphatase YigB, at 173,279 to 174,019
_00156
MIT1002_00157: MIT1002_00157 - Tyrosine recombinase XerC, at 174,040 to 174,960
_00157
Position (kb) 171
172
173
174 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 170.717 kb on - strand at 170.793 kb on + strand at 170.894 kb on + strand, within MIT1002_00154 at 170.919 kb on - strand, within MIT1002_00154 at 170.936 kb on + strand, within MIT1002_00154 at 170.944 kb on - strand, within MIT1002_00154 at 171.033 kb on - strand, within MIT1002_00154 at 171.133 kb on + strand, within MIT1002_00154 at 171.138 kb on - strand, within MIT1002_00154 at 171.139 kb on - strand, within MIT1002_00154 at 171.281 kb on + strand, within MIT1002_00154 at 171.299 kb on + strand, within MIT1002_00154 at 171.315 kb on - strand, within MIT1002_00154 at 171.335 kb on + strand, within MIT1002_00154 at 171.343 kb on - strand, within MIT1002_00154 at 171.371 kb on + strand, within MIT1002_00154 at 171.449 kb on + strand, within MIT1002_00154 at 171.470 kb on + strand, within MIT1002_00154 at 171.475 kb on + strand, within MIT1002_00154 at 171.618 kb on - strand at 171.667 kb on + strand at 171.667 kb on + strand at 171.675 kb on - strand at 171.684 kb on + strand at 171.697 kb on + strand at 171.697 kb on + strand at 171.697 kb on + strand at 171.697 kb on + strand at 171.705 kb on - strand at 171.705 kb on - strand at 171.705 kb on - strand at 171.705 kb on - strand at 171.818 kb on - strand, within MIT1002_00155 at 171.876 kb on - strand, within MIT1002_00155 at 171.911 kb on + strand, within MIT1002_00155 at 172.006 kb on - strand, within MIT1002_00155 at 172.035 kb on - strand, within MIT1002_00155 at 172.035 kb on - strand, within MIT1002_00155 at 172.035 kb on - strand, within MIT1002_00155 at 172.051 kb on - strand, within MIT1002_00155 at 172.054 kb on + strand, within MIT1002_00155 at 172.054 kb on + strand, within MIT1002_00155 at 172.062 kb on - strand, within MIT1002_00155 at 172.092 kb on + strand, within MIT1002_00155 at 172.100 kb on - strand, within MIT1002_00155 at 172.101 kb on + strand, within MIT1002_00155 at 172.148 kb on + strand, within MIT1002_00155 at 172.156 kb on + strand, within MIT1002_00155 at 172.169 kb on - strand, within MIT1002_00155 at 172.171 kb on - strand, within MIT1002_00155 at 172.196 kb on + strand, within MIT1002_00155 at 172.238 kb on + strand, within MIT1002_00155 at 172.238 kb on + strand, within MIT1002_00155 at 172.238 kb on + strand, within MIT1002_00155 at 172.238 kb on + strand, within MIT1002_00155 at 172.238 kb on + strand, within MIT1002_00155 at 172.238 kb on + strand, within MIT1002_00155 at 172.240 kb on + strand, within MIT1002_00155 at 172.246 kb on - strand, within MIT1002_00155 at 172.246 kb on - strand, within MIT1002_00155 at 172.246 kb on - strand, within MIT1002_00155 at 172.246 kb on - strand, within MIT1002_00155 at 172.246 kb on - strand, within MIT1002_00155 at 172.275 kb on + strand, within MIT1002_00155 at 172.275 kb on + strand, within MIT1002_00155 at 172.283 kb on - strand, within MIT1002_00155 at 172.283 kb on - strand, within MIT1002_00155 at 172.283 kb on - strand, within MIT1002_00155 at 172.283 kb on - strand, within MIT1002_00155 at 172.283 kb on - strand, within MIT1002_00155 at 172.283 kb on - strand, within MIT1002_00155 at 172.283 kb on - strand, within MIT1002_00155 at 172.283 kb on - strand, within MIT1002_00155 at 172.283 kb on - strand, within MIT1002_00155 at 172.283 kb on - strand, within MIT1002_00155 at 172.285 kb on + strand, within MIT1002_00155 at 172.285 kb on + strand, within MIT1002_00155 at 172.293 kb on - strand, within MIT1002_00155 at 172.335 kb on + strand, within MIT1002_00155 at 172.338 kb on - strand, within MIT1002_00155 at 172.364 kb on - strand, within MIT1002_00155 at 172.366 kb on + strand, within MIT1002_00155 at 172.486 kb on + strand, within MIT1002_00155 at 172.496 kb on + strand, within MIT1002_00155 at 172.498 kb on + strand, within MIT1002_00155 at 172.506 kb on - strand, within MIT1002_00155 at 172.506 kb on - strand, within MIT1002_00155 at 172.507 kb on - strand, within MIT1002_00155 at 172.615 kb on + strand, within MIT1002_00155 at 172.704 kb on - strand, within MIT1002_00155 at 172.718 kb on + strand, within MIT1002_00155 at 172.741 kb on + strand, within MIT1002_00155 at 172.762 kb on - strand, within MIT1002_00155 at 172.842 kb on - strand, within MIT1002_00155 at 172.874 kb on + strand, within MIT1002_00155 at 172.874 kb on + strand, within MIT1002_00155 at 172.874 kb on + strand, within MIT1002_00155 at 172.874 kb on + strand, within MIT1002_00155 at 172.874 kb on + strand, within MIT1002_00155 at 172.874 kb on + strand, within MIT1002_00155 at 172.874 kb on + strand, within MIT1002_00155 at 172.874 kb on + strand, within MIT1002_00155 at 172.881 kb on - strand, within MIT1002_00155 at 172.882 kb on - strand, within MIT1002_00155 at 172.882 kb on - strand, within MIT1002_00155 at 172.882 kb on - strand, within MIT1002_00155 at 172.882 kb on - strand, within MIT1002_00155 at 172.904 kb on + strand, within MIT1002_00155 at 172.904 kb on + strand, within MIT1002_00155 at 172.909 kb on + strand, within MIT1002_00155 at 172.916 kb on + strand, within MIT1002_00155 at 172.924 kb on - strand, within MIT1002_00155 at 172.958 kb on - strand, within MIT1002_00155 at 173.022 kb on + strand at 173.041 kb on + strand at 173.060 kb on - strand at 173.069 kb on - strand at 173.093 kb on - strand at 173.095 kb on - strand at 173.174 kb on + strand at 173.174 kb on + strand at 173.174 kb on - strand at 173.188 kb on + strand at 173.188 kb on - strand at 173.196 kb on - strand at 173.196 kb on - strand at 173.196 kb on - strand at 173.213 kb on + strand at 173.213 kb on + strand at 173.379 kb on - strand, within MIT1002_00156 at 173.409 kb on - strand, within MIT1002_00156 at 173.448 kb on - strand, within MIT1002_00156 at 173.458 kb on + strand, within MIT1002_00156 at 173.458 kb on + strand, within MIT1002_00156 at 173.463 kb on + strand, within MIT1002_00156 at 173.466 kb on - strand, within MIT1002_00156 at 173.471 kb on - strand, within MIT1002_00156 at 173.495 kb on + strand, within MIT1002_00156 at 173.495 kb on + strand, within MIT1002_00156 at 173.503 kb on - strand, within MIT1002_00156 at 173.518 kb on + strand, within MIT1002_00156 at 173.521 kb on + strand, within MIT1002_00156 at 173.526 kb on - strand, within MIT1002_00156 at 173.555 kb on + strand, within MIT1002_00156 at 173.562 kb on - strand, within MIT1002_00156 at 173.634 kb on + strand, within MIT1002_00156 at 173.641 kb on - strand, within MIT1002_00156 at 173.642 kb on - strand, within MIT1002_00156 at 173.644 kb on - strand, within MIT1002_00156 at 173.699 kb on + strand, within MIT1002_00156 at 173.699 kb on + strand, within MIT1002_00156 at 173.699 kb on + strand, within MIT1002_00156 at 173.699 kb on + strand, within MIT1002_00156 at 173.707 kb on - strand, within MIT1002_00156 at 173.707 kb on - strand, within MIT1002_00156 at 173.707 kb on - strand, within MIT1002_00156 at 173.707 kb on - strand, within MIT1002_00156 at 173.707 kb on - strand, within MIT1002_00156 at 173.707 kb on - strand, within MIT1002_00156 at 173.707 kb on - strand, within MIT1002_00156 at 173.707 kb on - strand, within MIT1002_00156 at 173.707 kb on - strand, within MIT1002_00156 at 173.707 kb on - strand, within MIT1002_00156 at 173.707 kb on - strand, within MIT1002_00156 at 173.731 kb on - strand, within MIT1002_00156 at 173.731 kb on - strand, within MIT1002_00156 at 173.760 kb on + strand, within MIT1002_00156 at 173.773 kb on - strand, within MIT1002_00156 at 173.777 kb on + strand, within MIT1002_00156 at 173.777 kb on + strand, within MIT1002_00156 at 173.795 kb on + strand, within MIT1002_00156 at 173.811 kb on + strand, within MIT1002_00156 at 173.852 kb on - strand, within MIT1002_00156 at 173.911 kb on + strand, within MIT1002_00156 at 173.926 kb on - strand, within MIT1002_00156 at 173.931 kb on - strand, within MIT1002_00156 at 173.968 kb on - strand at 173.971 kb on + strand at 173.971 kb on + strand at 173.972 kb on + strand at 173.973 kb on - strand at 173.986 kb on - strand at 174.002 kb on - strand at 174.043 kb on + strand at 174.060 kb on + strand at 174.106 kb on + strand at 174.106 kb on + strand at 174.106 kb on + strand at 174.106 kb on + strand at 174.107 kb on + strand at 174.107 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5 remove 170,717 - +0.1 170,793 + -1.8 170,894 + MIT1002_00154 0.12 -2.8 170,919 - MIT1002_00154 0.15 -1.2 170,936 + MIT1002_00154 0.17 -1.9 170,944 - MIT1002_00154 0.18 -1.0 171,033 - MIT1002_00154 0.29 -2.0 171,133 + MIT1002_00154 0.41 -1.7 171,138 - MIT1002_00154 0.42 -0.1 171,139 - MIT1002_00154 0.42 +0.1 171,281 + MIT1002_00154 0.60 -1.4 171,299 + MIT1002_00154 0.62 -1.8 171,315 - MIT1002_00154 0.64 +0.2 171,335 + MIT1002_00154 0.66 -2.4 171,343 - MIT1002_00154 0.67 +2.5 171,371 + MIT1002_00154 0.71 +0.2 171,449 + MIT1002_00154 0.80 -0.5 171,470 + MIT1002_00154 0.83 -1.2 171,475 + MIT1002_00154 0.83 -0.9 171,618 - +0.4 171,667 + +0.7 171,667 + -0.5 171,675 - -0.3 171,684 + +2.4 171,697 + -0.0 171,697 + -0.3 171,697 + +0.5 171,697 + -0.2 171,705 - -0.7 171,705 - -0.6 171,705 - +0.0 171,705 - -0.9 171,818 - MIT1002_00155 0.14 -1.2 171,876 - MIT1002_00155 0.18 -0.6 171,911 + MIT1002_00155 0.20 -1.8 172,006 - MIT1002_00155 0.27 -1.1 172,035 - MIT1002_00155 0.29 -0.2 172,035 - MIT1002_00155 0.29 +1.5 172,035 - MIT1002_00155 0.29 +3.8 172,051 - MIT1002_00155 0.30 +1.2 172,054 + MIT1002_00155 0.30 +0.2 172,054 + MIT1002_00155 0.30 +0.0 172,062 - MIT1002_00155 0.30 +0.2 172,092 + MIT1002_00155 0.32 -1.9 172,100 - MIT1002_00155 0.33 -0.4 172,101 + MIT1002_00155 0.33 +0.0 172,148 + MIT1002_00155 0.36 +0.3 172,156 + MIT1002_00155 0.37 -0.6 172,169 - MIT1002_00155 0.38 -0.6 172,171 - MIT1002_00155 0.38 -2.5 172,196 + MIT1002_00155 0.39 +1.8 172,238 + MIT1002_00155 0.42 -1.4 172,238 + MIT1002_00155 0.42 -0.3 172,238 + MIT1002_00155 0.42 +1.2 172,238 + MIT1002_00155 0.42 -0.6 172,238 + MIT1002_00155 0.42 -0.5 172,238 + MIT1002_00155 0.42 +1.4 172,240 + MIT1002_00155 0.42 -1.3 172,246 - MIT1002_00155 0.43 -0.7 172,246 - MIT1002_00155 0.43 -1.3 172,246 - MIT1002_00155 0.43 -0.1 172,246 - MIT1002_00155 0.43 -0.5 172,246 - MIT1002_00155 0.43 +1.2 172,275 + MIT1002_00155 0.45 -0.0 172,275 + MIT1002_00155 0.45 +1.2 172,283 - MIT1002_00155 0.45 +0.1 172,283 - MIT1002_00155 0.45 -0.8 172,283 - MIT1002_00155 0.45 +0.4 172,283 - MIT1002_00155 0.45 -1.3 172,283 - MIT1002_00155 0.45 -0.7 172,283 - MIT1002_00155 0.45 +0.9 172,283 - MIT1002_00155 0.45 -0.1 172,283 - MIT1002_00155 0.45 +0.7 172,283 - MIT1002_00155 0.45 -0.6 172,283 - MIT1002_00155 0.45 -0.3 172,285 + MIT1002_00155 0.45 -0.8 172,285 + MIT1002_00155 0.45 +0.7 172,293 - MIT1002_00155 0.46 +1.4 172,335 + MIT1002_00155 0.49 +0.5 172,338 - MIT1002_00155 0.49 -0.7 172,364 - MIT1002_00155 0.50 +0.2 172,366 + MIT1002_00155 0.51 +0.9 172,486 + MIT1002_00155 0.59 +1.2 172,496 + MIT1002_00155 0.59 +0.9 172,498 + MIT1002_00155 0.59 +1.2 172,506 - MIT1002_00155 0.60 -0.7 172,506 - MIT1002_00155 0.60 +0.7 172,507 - MIT1002_00155 0.60 -2.2 172,615 + MIT1002_00155 0.67 -1.6 172,704 - MIT1002_00155 0.73 -0.2 172,718 + MIT1002_00155 0.74 +1.8 172,741 + MIT1002_00155 0.75 +0.9 172,762 - MIT1002_00155 0.77 +0.2 172,842 - MIT1002_00155 0.82 +1.0 172,874 + MIT1002_00155 0.84 +0.1 172,874 + MIT1002_00155 0.84 +0.3 172,874 + MIT1002_00155 0.84 +0.0 172,874 + MIT1002_00155 0.84 -1.1 172,874 + MIT1002_00155 0.84 +0.1 172,874 + MIT1002_00155 0.84 +0.7 172,874 + MIT1002_00155 0.84 -0.3 172,874 + MIT1002_00155 0.84 +2.1 172,881 - MIT1002_00155 0.85 +1.6 172,882 - MIT1002_00155 0.85 +1.5 172,882 - MIT1002_00155 0.85 -0.1 172,882 - MIT1002_00155 0.85 +0.3 172,882 - MIT1002_00155 0.85 -2.2 172,904 + MIT1002_00155 0.86 -1.2 172,904 + MIT1002_00155 0.86 +2.6 172,909 + MIT1002_00155 0.87 +0.6 172,916 + MIT1002_00155 0.87 +1.4 172,924 - MIT1002_00155 0.88 +1.5 172,958 - MIT1002_00155 0.90 +0.5 173,022 + -1.2 173,041 + +1.4 173,060 - -0.7 173,069 - +1.4 173,093 - +1.6 173,095 - +1.0 173,174 + +0.9 173,174 + -0.5 173,174 - +0.5 173,188 + +0.2 173,188 - -1.5 173,196 - +1.1 173,196 - -0.3 173,196 - -0.5 173,213 + -0.1 173,213 + +2.2 173,379 - MIT1002_00156 0.13 -1.9 173,409 - MIT1002_00156 0.18 +0.3 173,448 - MIT1002_00156 0.23 -1.6 173,458 + MIT1002_00156 0.24 -0.6 173,458 + MIT1002_00156 0.24 +0.4 173,463 + MIT1002_00156 0.25 -2.0 173,466 - MIT1002_00156 0.25 -1.0 173,471 - MIT1002_00156 0.26 +0.2 173,495 + MIT1002_00156 0.29 +1.0 173,495 + MIT1002_00156 0.29 -0.7 173,503 - MIT1002_00156 0.30 +0.2 173,518 + MIT1002_00156 0.32 -0.4 173,521 + MIT1002_00156 0.33 -0.5 173,526 - MIT1002_00156 0.33 -1.0 173,555 + MIT1002_00156 0.37 +0.9 173,562 - MIT1002_00156 0.38 -1.8 173,634 + MIT1002_00156 0.48 -0.1 173,641 - MIT1002_00156 0.49 -0.7 173,642 - MIT1002_00156 0.49 -3.1 173,644 - MIT1002_00156 0.49 -1.0 173,699 + MIT1002_00156 0.57 -1.0 173,699 + MIT1002_00156 0.57 +0.2 173,699 + MIT1002_00156 0.57 +1.5 173,699 + MIT1002_00156 0.57 +0.9 173,707 - MIT1002_00156 0.58 +0.2 173,707 - MIT1002_00156 0.58 +0.1 173,707 - MIT1002_00156 0.58 -0.2 173,707 - MIT1002_00156 0.58 +0.1 173,707 - MIT1002_00156 0.58 +0.5 173,707 - MIT1002_00156 0.58 +1.2 173,707 - MIT1002_00156 0.58 +1.9 173,707 - MIT1002_00156 0.58 +2.1 173,707 - MIT1002_00156 0.58 -1.1 173,707 - MIT1002_00156 0.58 -1.1 173,707 - MIT1002_00156 0.58 +3.0 173,731 - MIT1002_00156 0.61 +0.2 173,731 - MIT1002_00156 0.61 +0.7 173,760 + MIT1002_00156 0.65 -1.9 173,773 - MIT1002_00156 0.67 -0.7 173,777 + MIT1002_00156 0.67 +0.7 173,777 + MIT1002_00156 0.67 -0.4 173,795 + MIT1002_00156 0.70 +2.0 173,811 + MIT1002_00156 0.72 -0.3 173,852 - MIT1002_00156 0.77 +0.0 173,911 + MIT1002_00156 0.85 +1.6 173,926 - MIT1002_00156 0.87 +1.1 173,931 - MIT1002_00156 0.88 +2.5 173,968 - -0.9 173,971 + -2.0 173,971 + +0.6 173,972 + +0.2 173,973 - +3.2 173,986 - -0.8 174,002 - +0.3 174,043 + -0.2 174,060 + -0.3 174,106 + +0.4 174,106 + +0.9 174,106 + +0.5 174,106 + +1.3 174,107 + +1.1 174,107 + +1.2
Or see this region's nucleotide sequence