Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00021 and MIT1002_00022 are separated by 39 nucleotides MIT1002_00022 and MIT1002_00023 are separated by 1 nucleotides MIT1002_00023 and MIT1002_00024 are separated by 85 nucleotides
MIT1002_00021: MIT1002_00021 - LysM domain/BON superfamily protein, at 25,038 to 26,111
_00021
MIT1002_00022: MIT1002_00022 - DNA protecting protein DprA, at 26,151 to 27,260
_00022
MIT1002_00023: MIT1002_00023 - hypothetical protein, at 27,262 to 27,738
_00023
MIT1002_00024: MIT1002_00024 - DNA topoisomerase 1, at 27,824 to 28,366
_00024
Position (kb) 26
27
28 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 25.152 kb on - strand, within MIT1002_00021 at 25.157 kb on + strand, within MIT1002_00021 at 25.167 kb on - strand, within MIT1002_00021 at 25.213 kb on + strand, within MIT1002_00021 at 25.257 kb on - strand, within MIT1002_00021 at 25.258 kb on + strand, within MIT1002_00021 at 25.262 kb on - strand, within MIT1002_00021 at 25.323 kb on - strand, within MIT1002_00021 at 25.343 kb on + strand, within MIT1002_00021 at 25.364 kb on - strand, within MIT1002_00021 at 25.394 kb on + strand, within MIT1002_00021 at 25.397 kb on - strand, within MIT1002_00021 at 25.402 kb on + strand, within MIT1002_00021 at 25.448 kb on + strand, within MIT1002_00021 at 25.450 kb on + strand, within MIT1002_00021 at 25.450 kb on + strand, within MIT1002_00021 at 25.458 kb on - strand, within MIT1002_00021 at 25.499 kb on + strand, within MIT1002_00021 at 25.499 kb on + strand, within MIT1002_00021 at 25.530 kb on + strand, within MIT1002_00021 at 25.535 kb on + strand, within MIT1002_00021 at 25.548 kb on + strand, within MIT1002_00021 at 25.553 kb on + strand, within MIT1002_00021 at 25.561 kb on - strand, within MIT1002_00021 at 25.625 kb on + strand, within MIT1002_00021 at 25.633 kb on - strand, within MIT1002_00021 at 25.660 kb on - strand, within MIT1002_00021 at 25.735 kb on + strand, within MIT1002_00021 at 25.735 kb on + strand, within MIT1002_00021 at 25.743 kb on - strand, within MIT1002_00021 at 25.743 kb on - strand, within MIT1002_00021 at 25.746 kb on + strand, within MIT1002_00021 at 25.754 kb on - strand, within MIT1002_00021 at 25.772 kb on - strand, within MIT1002_00021 at 25.786 kb on + strand, within MIT1002_00021 at 25.856 kb on - strand, within MIT1002_00021 at 25.858 kb on + strand, within MIT1002_00021 at 25.858 kb on + strand, within MIT1002_00021 at 25.876 kb on + strand, within MIT1002_00021 at 25.881 kb on + strand, within MIT1002_00021 at 25.926 kb on + strand, within MIT1002_00021 at 25.936 kb on + strand, within MIT1002_00021 at 25.936 kb on + strand, within MIT1002_00021 at 25.936 kb on + strand, within MIT1002_00021 at 25.936 kb on + strand, within MIT1002_00021 at 25.941 kb on + strand, within MIT1002_00021 at 25.980 kb on - strand, within MIT1002_00021 at 26.105 kb on + strand at 26.105 kb on + strand at 26.105 kb on + strand at 26.105 kb on + strand at 26.105 kb on + strand at 26.105 kb on + strand at 26.107 kb on - strand at 26.112 kb on + strand at 26.113 kb on - strand at 26.137 kb on + strand at 26.177 kb on - strand at 26.177 kb on - strand at 26.177 kb on - strand at 26.192 kb on - strand at 26.194 kb on + strand at 26.194 kb on + strand at 26.202 kb on - strand at 26.202 kb on - strand at 26.212 kb on - strand at 26.276 kb on - strand, within MIT1002_00022 at 26.308 kb on + strand, within MIT1002_00022 at 26.338 kb on - strand, within MIT1002_00022 at 26.363 kb on - strand, within MIT1002_00022 at 26.365 kb on + strand, within MIT1002_00022 at 26.433 kb on - strand, within MIT1002_00022 at 26.435 kb on + strand, within MIT1002_00022 at 26.450 kb on - strand, within MIT1002_00022 at 26.502 kb on + strand, within MIT1002_00022 at 26.534 kb on + strand, within MIT1002_00022 at 26.534 kb on + strand, within MIT1002_00022 at 26.542 kb on - strand, within MIT1002_00022 at 26.559 kb on + strand, within MIT1002_00022 at 26.559 kb on + strand, within MIT1002_00022 at 26.559 kb on + strand, within MIT1002_00022 at 26.589 kb on - strand, within MIT1002_00022 at 26.599 kb on + strand, within MIT1002_00022 at 26.607 kb on - strand, within MIT1002_00022 at 26.623 kb on + strand, within MIT1002_00022 at 26.628 kb on + strand, within MIT1002_00022 at 26.698 kb on - strand, within MIT1002_00022 at 26.714 kb on + strand, within MIT1002_00022 at 26.714 kb on + strand, within MIT1002_00022 at 26.717 kb on + strand, within MIT1002_00022 at 26.737 kb on + strand, within MIT1002_00022 at 26.742 kb on + strand, within MIT1002_00022 at 26.769 kb on + strand, within MIT1002_00022 at 26.776 kb on + strand, within MIT1002_00022 at 26.776 kb on + strand, within MIT1002_00022 at 26.828 kb on - strand, within MIT1002_00022 at 26.837 kb on - strand, within MIT1002_00022 at 26.895 kb on + strand, within MIT1002_00022 at 26.895 kb on + strand, within MIT1002_00022 at 26.895 kb on + strand, within MIT1002_00022 at 26.903 kb on - strand, within MIT1002_00022 at 26.924 kb on + strand, within MIT1002_00022 at 26.939 kb on + strand, within MIT1002_00022 at 26.947 kb on - strand, within MIT1002_00022 at 26.947 kb on - strand, within MIT1002_00022 at 26.962 kb on + strand, within MIT1002_00022 at 27.227 kb on + strand at 27.233 kb on - strand at 27.426 kb on - strand, within MIT1002_00023 at 27.426 kb on - strand, within MIT1002_00023 at 27.454 kb on + strand, within MIT1002_00023 at 27.454 kb on + strand, within MIT1002_00023 at 27.454 kb on + strand, within MIT1002_00023 at 27.462 kb on - strand, within MIT1002_00023 at 27.462 kb on - strand, within MIT1002_00023 at 27.462 kb on - strand, within MIT1002_00023 at 27.462 kb on - strand, within MIT1002_00023 at 27.462 kb on - strand, within MIT1002_00023 at 27.466 kb on + strand, within MIT1002_00023 at 27.466 kb on + strand, within MIT1002_00023 at 27.474 kb on - strand, within MIT1002_00023 at 27.474 kb on - strand, within MIT1002_00023 at 27.476 kb on + strand, within MIT1002_00023 at 27.484 kb on - strand, within MIT1002_00023 at 27.544 kb on - strand, within MIT1002_00023 at 27.546 kb on + strand, within MIT1002_00023 at 27.553 kb on - strand, within MIT1002_00023 at 27.554 kb on - strand, within MIT1002_00023 at 27.554 kb on - strand, within MIT1002_00023 at 27.561 kb on - strand, within MIT1002_00023 at 27.588 kb on - strand, within MIT1002_00023 at 27.628 kb on + strand, within MIT1002_00023 at 27.636 kb on - strand, within MIT1002_00023 at 27.636 kb on - strand, within MIT1002_00023 at 27.651 kb on - strand, within MIT1002_00023 at 27.652 kb on + strand, within MIT1002_00023 at 27.684 kb on - strand, within MIT1002_00023 at 27.684 kb on - strand, within MIT1002_00023 at 27.741 kb on - strand at 27.743 kb on + strand at 27.830 kb on + strand at 27.891 kb on + strand, within MIT1002_00024 at 27.901 kb on + strand, within MIT1002_00024 at 27.968 kb on - strand, within MIT1002_00024 at 27.969 kb on - strand, within MIT1002_00024 at 28.009 kb on + strand, within MIT1002_00024 at 28.010 kb on - strand, within MIT1002_00024 at 28.025 kb on - strand, within MIT1002_00024 at 28.026 kb on + strand, within MIT1002_00024 at 28.033 kb on - strand, within MIT1002_00024 at 28.034 kb on - strand, within MIT1002_00024 at 28.038 kb on - strand, within MIT1002_00024 at 28.042 kb on + strand, within MIT1002_00024 at 28.120 kb on + strand, within MIT1002_00024 at 28.161 kb on + strand, within MIT1002_00024 at 28.168 kb on + strand, within MIT1002_00024 at 28.176 kb on - strand, within MIT1002_00024 at 28.182 kb on + strand, within MIT1002_00024 at 28.231 kb on + strand, within MIT1002_00024 at 28.245 kb on + strand, within MIT1002_00024 at 28.253 kb on - strand, within MIT1002_00024 at 28.253 kb on - strand, within MIT1002_00024
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5 remove 25,152 - MIT1002_00021 0.11 +1.3 25,157 + MIT1002_00021 0.11 -0.9 25,167 - MIT1002_00021 0.12 +0.3 25,213 + MIT1002_00021 0.16 +0.7 25,257 - MIT1002_00021 0.20 +0.2 25,258 + MIT1002_00021 0.20 +1.0 25,262 - MIT1002_00021 0.21 +0.1 25,323 - MIT1002_00021 0.27 +1.0 25,343 + MIT1002_00021 0.28 -0.3 25,364 - MIT1002_00021 0.30 -1.5 25,394 + MIT1002_00021 0.33 -0.5 25,397 - MIT1002_00021 0.33 +1.1 25,402 + MIT1002_00021 0.34 -1.3 25,448 + MIT1002_00021 0.38 -0.7 25,450 + MIT1002_00021 0.38 -1.1 25,450 + MIT1002_00021 0.38 +0.9 25,458 - MIT1002_00021 0.39 -0.2 25,499 + MIT1002_00021 0.43 +1.0 25,499 + MIT1002_00021 0.43 -1.8 25,530 + MIT1002_00021 0.46 -0.5 25,535 + MIT1002_00021 0.46 -1.3 25,548 + MIT1002_00021 0.47 -3.0 25,553 + MIT1002_00021 0.48 +0.6 25,561 - MIT1002_00021 0.49 +1.3 25,625 + MIT1002_00021 0.55 +0.2 25,633 - MIT1002_00021 0.55 +0.8 25,660 - MIT1002_00021 0.58 +3.5 25,735 + MIT1002_00021 0.65 +0.4 25,735 + MIT1002_00021 0.65 +0.4 25,743 - MIT1002_00021 0.66 -1.0 25,743 - MIT1002_00021 0.66 +0.4 25,746 + MIT1002_00021 0.66 -2.4 25,754 - MIT1002_00021 0.67 +0.2 25,772 - MIT1002_00021 0.68 +2.4 25,786 + MIT1002_00021 0.70 +2.4 25,856 - MIT1002_00021 0.76 +0.2 25,858 + MIT1002_00021 0.76 +1.2 25,858 + MIT1002_00021 0.76 -1.7 25,876 + MIT1002_00021 0.78 +0.6 25,881 + MIT1002_00021 0.78 -0.6 25,926 + MIT1002_00021 0.83 +0.9 25,936 + MIT1002_00021 0.84 +3.0 25,936 + MIT1002_00021 0.84 -0.1 25,936 + MIT1002_00021 0.84 -0.2 25,936 + MIT1002_00021 0.84 +0.9 25,941 + MIT1002_00021 0.84 -1.4 25,980 - MIT1002_00021 0.88 +0.2 26,105 + +0.0 26,105 + +0.7 26,105 + +2.6 26,105 + -0.6 26,105 + -0.9 26,105 + +0.5 26,107 - +0.2 26,112 + -0.6 26,113 - -0.4 26,137 + +2.5 26,177 - -0.2 26,177 - -1.8 26,177 - +2.2 26,192 - -0.5 26,194 + -0.8 26,194 + -1.2 26,202 - +0.6 26,202 - -1.3 26,212 - +0.1 26,276 - MIT1002_00022 0.11 -2.7 26,308 + MIT1002_00022 0.14 +0.8 26,338 - MIT1002_00022 0.17 -0.0 26,363 - MIT1002_00022 0.19 -1.5 26,365 + MIT1002_00022 0.19 +0.7 26,433 - MIT1002_00022 0.25 +1.1 26,435 + MIT1002_00022 0.26 -1.2 26,450 - MIT1002_00022 0.27 +1.2 26,502 + MIT1002_00022 0.32 -2.5 26,534 + MIT1002_00022 0.35 -0.1 26,534 + MIT1002_00022 0.35 -0.4 26,542 - MIT1002_00022 0.35 -1.2 26,559 + MIT1002_00022 0.37 +0.3 26,559 + MIT1002_00022 0.37 -1.0 26,559 + MIT1002_00022 0.37 +0.6 26,589 - MIT1002_00022 0.39 -0.8 26,599 + MIT1002_00022 0.40 -0.2 26,607 - MIT1002_00022 0.41 +1.7 26,623 + MIT1002_00022 0.43 +0.3 26,628 + MIT1002_00022 0.43 +0.2 26,698 - MIT1002_00022 0.49 -1.2 26,714 + MIT1002_00022 0.51 +0.0 26,714 + MIT1002_00022 0.51 -0.4 26,717 + MIT1002_00022 0.51 -0.1 26,737 + MIT1002_00022 0.53 +1.5 26,742 + MIT1002_00022 0.53 +1.3 26,769 + MIT1002_00022 0.56 +1.5 26,776 + MIT1002_00022 0.56 +2.0 26,776 + MIT1002_00022 0.56 -0.5 26,828 - MIT1002_00022 0.61 -0.0 26,837 - MIT1002_00022 0.62 +0.8 26,895 + MIT1002_00022 0.67 +0.1 26,895 + MIT1002_00022 0.67 -0.4 26,895 + MIT1002_00022 0.67 +0.5 26,903 - MIT1002_00022 0.68 +1.8 26,924 + MIT1002_00022 0.70 -0.7 26,939 + MIT1002_00022 0.71 -0.6 26,947 - MIT1002_00022 0.72 +0.7 26,947 - MIT1002_00022 0.72 +1.6 26,962 + MIT1002_00022 0.73 -1.6 27,227 + -3.2 27,233 - -0.1 27,426 - MIT1002_00023 0.34 -1.3 27,426 - MIT1002_00023 0.34 -1.9 27,454 + MIT1002_00023 0.40 -0.4 27,454 + MIT1002_00023 0.40 -0.3 27,454 + MIT1002_00023 0.40 -2.5 27,462 - MIT1002_00023 0.42 -2.8 27,462 - MIT1002_00023 0.42 -0.7 27,462 - MIT1002_00023 0.42 -1.9 27,462 - MIT1002_00023 0.42 -3.2 27,462 - MIT1002_00023 0.42 -1.1 27,466 + MIT1002_00023 0.43 -1.5 27,466 + MIT1002_00023 0.43 -0.9 27,474 - MIT1002_00023 0.44 -2.2 27,474 - MIT1002_00023 0.44 -1.6 27,476 + MIT1002_00023 0.45 -2.3 27,484 - MIT1002_00023 0.47 +0.5 27,544 - MIT1002_00023 0.59 -0.7 27,546 + MIT1002_00023 0.60 -0.8 27,553 - MIT1002_00023 0.61 -0.5 27,554 - MIT1002_00023 0.61 -1.1 27,554 - MIT1002_00023 0.61 -0.6 27,561 - MIT1002_00023 0.63 -1.0 27,588 - MIT1002_00023 0.68 +0.8 27,628 + MIT1002_00023 0.77 -2.0 27,636 - MIT1002_00023 0.78 +0.3 27,636 - MIT1002_00023 0.78 -0.4 27,651 - MIT1002_00023 0.82 +0.5 27,652 + MIT1002_00023 0.82 +0.0 27,684 - MIT1002_00023 0.88 -0.5 27,684 - MIT1002_00023 0.88 -2.2 27,741 - +1.7 27,743 + +1.7 27,830 + -2.6 27,891 + MIT1002_00024 0.12 +0.4 27,901 + MIT1002_00024 0.14 +0.8 27,968 - MIT1002_00024 0.27 +1.5 27,969 - MIT1002_00024 0.27 -0.3 28,009 + MIT1002_00024 0.34 +1.9 28,010 - MIT1002_00024 0.34 -0.7 28,025 - MIT1002_00024 0.37 +0.7 28,026 + MIT1002_00024 0.37 +0.1 28,033 - MIT1002_00024 0.38 -0.8 28,034 - MIT1002_00024 0.39 -0.6 28,038 - MIT1002_00024 0.39 +1.6 28,042 + MIT1002_00024 0.40 +0.5 28,120 + MIT1002_00024 0.55 -0.9 28,161 + MIT1002_00024 0.62 +1.2 28,168 + MIT1002_00024 0.63 -0.4 28,176 - MIT1002_00024 0.65 -0.6 28,182 + MIT1002_00024 0.66 -0.7 28,231 + MIT1002_00024 0.75 -1.0 28,245 + MIT1002_00024 0.78 +0.8 28,253 - MIT1002_00024 0.79 -0.7 28,253 - MIT1002_00024 0.79 -0.2
Or see this region's nucleotide sequence