Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04205

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_04204 and MIT1002_04205 are separated by 52 nucleotidesMIT1002_04205 and MIT1002_04206 are separated by 29 nucleotides MIT1002_04204: MIT1002_04204 - putative chromate transport protein, at 69,207 to 70,664 _04204 MIT1002_04205: MIT1002_04205 - hypothetical protein, at 70,717 to 71,625 _04205 MIT1002_04206: MIT1002_04206 - site-specific tyrosine recombinase XerC, at 71,655 to 72,662 _04206 Position (kb) 70 71 72Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 69.838 kb on + strand, within MIT1002_04204at 69.846 kb on - strand, within MIT1002_04204at 69.895 kb on + strand, within MIT1002_04204at 69.946 kb on + strand, within MIT1002_04204at 69.954 kb on - strand, within MIT1002_04204at 69.969 kb on - strand, within MIT1002_04204at 69.987 kb on - strand, within MIT1002_04204at 70.001 kb on + strand, within MIT1002_04204at 70.001 kb on + strand, within MIT1002_04204at 70.026 kb on - strand, within MIT1002_04204at 70.068 kb on + strand, within MIT1002_04204at 70.073 kb on - strand, within MIT1002_04204at 70.092 kb on + strand, within MIT1002_04204at 70.097 kb on + strand, within MIT1002_04204at 70.105 kb on - strand, within MIT1002_04204at 70.115 kb on - strand, within MIT1002_04204at 70.143 kb on - strand, within MIT1002_04204at 70.152 kb on + strand, within MIT1002_04204at 70.161 kb on + strand, within MIT1002_04204at 70.166 kb on + strand, within MIT1002_04204at 70.166 kb on + strand, within MIT1002_04204at 70.169 kb on - strand, within MIT1002_04204at 70.179 kb on + strand, within MIT1002_04204at 70.196 kb on + strand, within MIT1002_04204at 70.204 kb on - strand, within MIT1002_04204at 70.227 kb on - strand, within MIT1002_04204at 70.249 kb on + strand, within MIT1002_04204at 70.264 kb on - strand, within MIT1002_04204at 70.267 kb on - strand, within MIT1002_04204at 70.293 kb on + strand, within MIT1002_04204at 70.343 kb on + strand, within MIT1002_04204at 70.456 kb on + strand, within MIT1002_04204at 70.466 kb on + strand, within MIT1002_04204at 70.481 kb on + strand, within MIT1002_04204at 70.481 kb on + strand, within MIT1002_04204at 70.481 kb on + strand, within MIT1002_04204at 70.481 kb on + strand, within MIT1002_04204at 70.482 kb on - strand, within MIT1002_04204at 70.489 kb on - strand, within MIT1002_04204at 70.489 kb on - strand, within MIT1002_04204at 70.499 kb on + strand, within MIT1002_04204at 70.507 kb on - strand, within MIT1002_04204at 70.522 kb on - strandat 70.552 kb on - strandat 70.573 kb on + strandat 70.609 kb on + strandat 70.614 kb on + strandat 70.614 kb on + strandat 70.657 kb on - strandat 70.665 kb on + strandat 70.744 kb on + strandat 70.835 kb on - strand, within MIT1002_04205at 70.856 kb on - strand, within MIT1002_04205at 70.856 kb on - strand, within MIT1002_04205at 70.876 kb on + strand, within MIT1002_04205at 70.938 kb on + strand, within MIT1002_04205at 71.004 kb on + strand, within MIT1002_04205at 71.058 kb on + strand, within MIT1002_04205at 71.066 kb on - strand, within MIT1002_04205at 71.071 kb on + strand, within MIT1002_04205at 71.071 kb on + strand, within MIT1002_04205at 71.108 kb on + strand, within MIT1002_04205at 71.168 kb on - strand, within MIT1002_04205at 71.210 kb on - strand, within MIT1002_04205at 71.264 kb on - strand, within MIT1002_04205at 71.271 kb on - strand, within MIT1002_04205at 71.281 kb on + strand, within MIT1002_04205at 71.335 kb on - strand, within MIT1002_04205at 71.344 kb on + strand, within MIT1002_04205at 71.362 kb on - strand, within MIT1002_04205at 71.372 kb on + strand, within MIT1002_04205at 71.380 kb on - strand, within MIT1002_04205at 71.499 kb on - strand, within MIT1002_04205at 71.499 kb on - strand, within MIT1002_04205at 71.517 kb on + strand, within MIT1002_04205at 71.518 kb on + strand, within MIT1002_04205at 71.568 kb on + strandat 71.568 kb on + strandat 71.568 kb on + strandat 71.568 kb on + strandat 71.581 kb on - strandat 71.583 kb on - strandat 71.589 kb on - strandat 71.603 kb on - strandat 71.613 kb on - strandat 71.629 kb on - strandat 71.652 kb on + strandat 71.664 kb on + strandat 71.709 kb on + strandat 71.718 kb on + strandat 71.739 kb on + strandat 71.739 kb on + strandat 71.786 kb on + strand, within MIT1002_04206at 71.801 kb on - strand, within MIT1002_04206at 71.853 kb on - strand, within MIT1002_04206at 71.901 kb on + strand, within MIT1002_04206at 71.934 kb on - strand, within MIT1002_04206at 71.940 kb on - strand, within MIT1002_04206at 72.033 kb on - strand, within MIT1002_04206at 72.057 kb on + strand, within MIT1002_04206at 72.065 kb on - strand, within MIT1002_04206at 72.187 kb on + strand, within MIT1002_04206at 72.187 kb on + strand, within MIT1002_04206at 72.266 kb on + strand, within MIT1002_04206at 72.273 kb on + strand, within MIT1002_04206at 72.274 kb on + strand, within MIT1002_04206at 72.274 kb on - strand, within MIT1002_04206at 72.280 kb on + strand, within MIT1002_04206at 72.288 kb on - strand, within MIT1002_04206at 72.310 kb on - strand, within MIT1002_04206at 72.310 kb on - strand, within MIT1002_04206at 72.476 kb on - strand, within MIT1002_04206at 72.542 kb on + strand, within MIT1002_04206at 72.550 kb on - strand, within MIT1002_04206at 72.575 kb on - strandat 72.602 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4
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69,838 + MIT1002_04204 0.43 -1.2
69,846 - MIT1002_04204 0.44 -0.2
69,895 + MIT1002_04204 0.47 +0.0
69,946 + MIT1002_04204 0.51 -1.2
69,954 - MIT1002_04204 0.51 +0.3
69,969 - MIT1002_04204 0.52 +0.2
69,987 - MIT1002_04204 0.53 +0.1
70,001 + MIT1002_04204 0.54 -1.0
70,001 + MIT1002_04204 0.54 +1.1
70,026 - MIT1002_04204 0.56 -1.1
70,068 + MIT1002_04204 0.59 -0.3
70,073 - MIT1002_04204 0.59 +0.4
70,092 + MIT1002_04204 0.61 -0.3
70,097 + MIT1002_04204 0.61 -0.1
70,105 - MIT1002_04204 0.62 +0.6
70,115 - MIT1002_04204 0.62 -1.2
70,143 - MIT1002_04204 0.64 +0.1
70,152 + MIT1002_04204 0.65 +0.9
70,161 + MIT1002_04204 0.65 -1.2
70,166 + MIT1002_04204 0.66 +1.3
70,166 + MIT1002_04204 0.66 -3.3
70,169 - MIT1002_04204 0.66 +0.4
70,179 + MIT1002_04204 0.67 -0.1
70,196 + MIT1002_04204 0.68 +0.6
70,204 - MIT1002_04204 0.68 +1.3
70,227 - MIT1002_04204 0.70 +0.4
70,249 + MIT1002_04204 0.71 +0.2
70,264 - MIT1002_04204 0.72 -0.9
70,267 - MIT1002_04204 0.73 -0.4
70,293 + MIT1002_04204 0.74 +0.0
70,343 + MIT1002_04204 0.78 -0.3
70,456 + MIT1002_04204 0.86 -1.0
70,466 + MIT1002_04204 0.86 -0.1
70,481 + MIT1002_04204 0.87 +0.9
70,481 + MIT1002_04204 0.87 +0.4
70,481 + MIT1002_04204 0.87 -0.1
70,481 + MIT1002_04204 0.87 +1.1
70,482 - MIT1002_04204 0.87 +1.1
70,489 - MIT1002_04204 0.88 +0.2
70,489 - MIT1002_04204 0.88 +0.5
70,499 + MIT1002_04204 0.89 -0.1
70,507 - MIT1002_04204 0.89 -1.3
70,522 - +0.6
70,552 - +0.9
70,573 + +0.4
70,609 + +0.2
70,614 + -0.3
70,614 + -0.2
70,657 - +0.2
70,665 + +0.5
70,744 + -1.7
70,835 - MIT1002_04205 0.13 +0.7
70,856 - MIT1002_04205 0.15 -0.1
70,856 - MIT1002_04205 0.15 -0.2
70,876 + MIT1002_04205 0.17 -0.9
70,938 + MIT1002_04205 0.24 +0.3
71,004 + MIT1002_04205 0.32 -0.7
71,058 + MIT1002_04205 0.38 -0.3
71,066 - MIT1002_04205 0.38 +0.0
71,071 + MIT1002_04205 0.39 -1.8
71,071 + MIT1002_04205 0.39 -0.1
71,108 + MIT1002_04205 0.43 +1.0
71,168 - MIT1002_04205 0.50 +0.5
71,210 - MIT1002_04205 0.54 +0.0
71,264 - MIT1002_04205 0.60 -0.7
71,271 - MIT1002_04205 0.61 -1.8
71,281 + MIT1002_04205 0.62 +0.4
71,335 - MIT1002_04205 0.68 -0.2
71,344 + MIT1002_04205 0.69 +2.2
71,362 - MIT1002_04205 0.71 +1.0
71,372 + MIT1002_04205 0.72 +0.7
71,380 - MIT1002_04205 0.73 -0.4
71,499 - MIT1002_04205 0.86 +0.6
71,499 - MIT1002_04205 0.86 +0.9
71,517 + MIT1002_04205 0.88 -0.9
71,518 + MIT1002_04205 0.88 -0.2
71,568 + +0.2
71,568 + -0.3
71,568 + -1.1
71,568 + -0.7
71,581 - +0.1
71,583 - -1.4
71,589 - -1.1
71,603 - -1.4
71,613 - -2.3
71,629 - +0.4
71,652 + -0.1
71,664 + -0.3
71,709 + +0.6
71,718 + -0.5
71,739 + +1.0
71,739 + -3.4
71,786 + MIT1002_04206 0.13 -1.6
71,801 - MIT1002_04206 0.14 -0.7
71,853 - MIT1002_04206 0.20 -0.9
71,901 + MIT1002_04206 0.24 +0.3
71,934 - MIT1002_04206 0.28 +0.1
71,940 - MIT1002_04206 0.28 +0.3
72,033 - MIT1002_04206 0.38 -0.0
72,057 + MIT1002_04206 0.40 +0.2
72,065 - MIT1002_04206 0.41 -0.5
72,187 + MIT1002_04206 0.53 +0.8
72,187 + MIT1002_04206 0.53 +0.3
72,266 + MIT1002_04206 0.61 -3.2
72,273 + MIT1002_04206 0.61 -0.1
72,274 + MIT1002_04206 0.61 -2.1
72,274 - MIT1002_04206 0.61 +0.7
72,280 + MIT1002_04206 0.62 -0.0
72,288 - MIT1002_04206 0.63 -0.2
72,310 - MIT1002_04206 0.65 +0.7
72,310 - MIT1002_04206 0.65 -0.0
72,476 - MIT1002_04206 0.81 +0.4
72,542 + MIT1002_04206 0.88 +0.4
72,550 - MIT1002_04206 0.89 -1.3
72,575 - -0.6
72,602 + -0.3

Or see this region's nucleotide sequence