Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04202

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_04200 and MIT1002_04201 overlap by 4 nucleotidesMIT1002_04201 and MIT1002_04202 are separated by 174 nucleotidesMIT1002_04202 and MIT1002_04203 are separated by 169 nucleotides MIT1002_04200: MIT1002_04200 - Cell wall-associated polypeptide CWBP200, at 59,833 to 64,488 _04200 MIT1002_04201: MIT1002_04201 - hypothetical protein, at 64,485 to 64,997 _04201 MIT1002_04202: MIT1002_04202 - Transposase, TnpA family, at 65,172 to 68,105 _04202 MIT1002_04203: MIT1002_04203 - hypothetical protein, at 68,275 to 69,204 _04203 Position (kb) 65 66 67 68 69Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 64.204 kb on + strandat 64.210 kb on + strandat 64.211 kb on - strandat 64.212 kb on - strandat 64.241 kb on + strandat 64.250 kb on - strandat 64.272 kb on - strandat 64.272 kb on - strandat 64.281 kb on - strandat 64.298 kb on + strandat 64.300 kb on + strandat 64.305 kb on - strandat 64.381 kb on + strandat 64.395 kb on + strandat 64.418 kb on + strandat 64.426 kb on - strandat 64.481 kb on - strandat 65.002 kb on + strandat 65.010 kb on - strandat 65.025 kb on - strandat 65.060 kb on - strandat 65.062 kb on - strandat 65.097 kb on - strandat 65.127 kb on + strandat 65.127 kb on + strandat 65.135 kb on - strandat 65.135 kb on - strandat 65.135 kb on - strandat 65.206 kb on + strandat 65.206 kb on + strandat 65.206 kb on - strandat 65.206 kb on - strandat 65.211 kb on + strandat 65.309 kb on + strandat 65.311 kb on - strandat 65.395 kb on - strandat 65.405 kb on - strandat 65.452 kb on + strandat 65.453 kb on - strandat 65.460 kb on - strandat 65.497 kb on + strand, within MIT1002_04202at 65.505 kb on - strand, within MIT1002_04202at 65.550 kb on + strand, within MIT1002_04202at 65.550 kb on + strand, within MIT1002_04202at 65.573 kb on - strand, within MIT1002_04202at 65.663 kb on - strand, within MIT1002_04202at 65.676 kb on + strand, within MIT1002_04202at 65.714 kb on - strand, within MIT1002_04202at 65.777 kb on + strand, within MIT1002_04202at 65.807 kb on + strand, within MIT1002_04202at 65.834 kb on + strand, within MIT1002_04202at 65.834 kb on + strand, within MIT1002_04202at 66.037 kb on - strand, within MIT1002_04202at 66.037 kb on - strand, within MIT1002_04202at 66.084 kb on + strand, within MIT1002_04202at 66.090 kb on - strand, within MIT1002_04202at 66.092 kb on - strand, within MIT1002_04202at 66.092 kb on - strand, within MIT1002_04202at 66.107 kb on - strand, within MIT1002_04202at 66.184 kb on - strand, within MIT1002_04202at 66.189 kb on - strand, within MIT1002_04202at 66.233 kb on - strand, within MIT1002_04202at 66.239 kb on + strand, within MIT1002_04202at 66.286 kb on + strand, within MIT1002_04202at 66.286 kb on + strand, within MIT1002_04202at 66.286 kb on + strand, within MIT1002_04202at 66.286 kb on + strand, within MIT1002_04202at 66.286 kb on + strand, within MIT1002_04202at 66.294 kb on - strand, within MIT1002_04202at 66.389 kb on + strand, within MIT1002_04202at 66.421 kb on + strand, within MIT1002_04202at 66.433 kb on + strand, within MIT1002_04202at 66.452 kb on - strand, within MIT1002_04202at 66.487 kb on + strand, within MIT1002_04202at 66.542 kb on - strand, within MIT1002_04202at 66.588 kb on + strand, within MIT1002_04202at 66.611 kb on + strand, within MIT1002_04202at 66.641 kb on - strand, within MIT1002_04202at 66.641 kb on - strand, within MIT1002_04202at 66.653 kb on - strand, within MIT1002_04202at 66.675 kb on + strand, within MIT1002_04202at 66.761 kb on + strand, within MIT1002_04202at 66.761 kb on + strand, within MIT1002_04202at 66.761 kb on - strand, within MIT1002_04202at 66.769 kb on - strand, within MIT1002_04202at 66.788 kb on + strand, within MIT1002_04202at 66.789 kb on + strand, within MIT1002_04202at 66.807 kb on + strand, within MIT1002_04202at 66.807 kb on + strand, within MIT1002_04202at 66.870 kb on - strand, within MIT1002_04202at 66.883 kb on + strand, within MIT1002_04202at 66.883 kb on - strand, within MIT1002_04202at 66.891 kb on - strand, within MIT1002_04202at 66.908 kb on + strand, within MIT1002_04202at 67.102 kb on + strand, within MIT1002_04202at 67.195 kb on + strand, within MIT1002_04202at 67.195 kb on + strand, within MIT1002_04202at 67.195 kb on + strand, within MIT1002_04202at 67.203 kb on - strand, within MIT1002_04202at 67.289 kb on + strand, within MIT1002_04202at 67.307 kb on + strand, within MIT1002_04202at 67.307 kb on + strand, within MIT1002_04202at 67.315 kb on - strand, within MIT1002_04202at 67.390 kb on - strand, within MIT1002_04202at 67.423 kb on - strand, within MIT1002_04202at 67.472 kb on + strand, within MIT1002_04202at 67.472 kb on + strand, within MIT1002_04202at 67.576 kb on + strand, within MIT1002_04202at 67.607 kb on - strand, within MIT1002_04202at 67.609 kb on + strand, within MIT1002_04202at 67.711 kb on - strand, within MIT1002_04202at 67.720 kb on - strand, within MIT1002_04202at 67.725 kb on + strand, within MIT1002_04202at 67.733 kb on - strand, within MIT1002_04202at 67.793 kb on + strand, within MIT1002_04202at 67.793 kb on - strand, within MIT1002_04202at 67.802 kb on - strand, within MIT1002_04202at 67.802 kb on - strand, within MIT1002_04202at 67.823 kb on + strandat 67.831 kb on - strandat 67.866 kb on - strandat 67.869 kb on + strandat 67.877 kb on - strandat 68.067 kb on - strandat 68.080 kb on + strandat 68.080 kb on + strandat 68.103 kb on + strandat 68.171 kb on + strandat 68.179 kb on + strandat 68.179 kb on - strandat 68.321 kb on - strandat 68.336 kb on - strandat 68.410 kb on - strand, within MIT1002_04203at 68.465 kb on + strand, within MIT1002_04203at 68.465 kb on + strand, within MIT1002_04203at 68.465 kb on + strand, within MIT1002_04203at 68.473 kb on - strand, within MIT1002_04203at 68.473 kb on - strand, within MIT1002_04203at 68.520 kb on - strand, within MIT1002_04203at 68.599 kb on + strand, within MIT1002_04203at 68.612 kb on + strand, within MIT1002_04203at 68.692 kb on + strand, within MIT1002_04203at 68.711 kb on - strand, within MIT1002_04203at 68.748 kb on + strand, within MIT1002_04203at 68.748 kb on + strand, within MIT1002_04203at 68.799 kb on + strand, within MIT1002_04203at 68.804 kb on + strand, within MIT1002_04203at 68.828 kb on - strand, within MIT1002_04203at 68.852 kb on - strand, within MIT1002_04203at 69.009 kb on + strand, within MIT1002_04203at 69.009 kb on + strand, within MIT1002_04203at 69.009 kb on + strand, within MIT1002_04203at 69.017 kb on - strand, within MIT1002_04203at 69.040 kb on + strand, within MIT1002_04203at 69.048 kb on - strand, within MIT1002_04203at 69.048 kb on - strand, within MIT1002_04203at 69.050 kb on + strand, within MIT1002_04203at 69.050 kb on + strand, within MIT1002_04203

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4
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64,204 + -0.2
64,210 + -1.1
64,211 - +0.3
64,212 - -1.1
64,241 + +1.9
64,250 - -1.1
64,272 - +0.6
64,272 - -1.0
64,281 - +1.0
64,298 + +0.3
64,300 + -0.7
64,305 - +0.1
64,381 + +0.1
64,395 + -1.3
64,418 + -3.0
64,426 - -0.0
64,481 - +1.7
65,002 + -0.1
65,010 - -0.5
65,025 - +0.3
65,060 - -0.5
65,062 - -1.2
65,097 - +1.5
65,127 + +1.1
65,127 + -1.1
65,135 - +0.1
65,135 - +0.4
65,135 - -1.1
65,206 + -0.4
65,206 + +0.1
65,206 - +1.7
65,206 - +0.6
65,211 + +0.4
65,309 + +1.3
65,311 - -0.7
65,395 - -0.1
65,405 - +0.6
65,452 + +0.3
65,453 - -0.7
65,460 - +0.6
65,497 + MIT1002_04202 0.11 -0.8
65,505 - MIT1002_04202 0.11 +0.5
65,550 + MIT1002_04202 0.13 -0.1
65,550 + MIT1002_04202 0.13 +0.1
65,573 - MIT1002_04202 0.14 -0.3
65,663 - MIT1002_04202 0.17 -0.1
65,676 + MIT1002_04202 0.17 +1.1
65,714 - MIT1002_04202 0.18 -2.1
65,777 + MIT1002_04202 0.21 -0.7
65,807 + MIT1002_04202 0.22 -0.3
65,834 + MIT1002_04202 0.23 +0.7
65,834 + MIT1002_04202 0.23 -0.6
66,037 - MIT1002_04202 0.29 +0.9
66,037 - MIT1002_04202 0.29 +0.7
66,084 + MIT1002_04202 0.31 +2.2
66,090 - MIT1002_04202 0.31 +1.5
66,092 - MIT1002_04202 0.31 +0.5
66,092 - MIT1002_04202 0.31 +0.9
66,107 - MIT1002_04202 0.32 -0.2
66,184 - MIT1002_04202 0.34 -0.3
66,189 - MIT1002_04202 0.35 +0.3
66,233 - MIT1002_04202 0.36 +0.8
66,239 + MIT1002_04202 0.36 -0.2
66,286 + MIT1002_04202 0.38 +0.5
66,286 + MIT1002_04202 0.38 -0.4
66,286 + MIT1002_04202 0.38 -0.4
66,286 + MIT1002_04202 0.38 +0.6
66,286 + MIT1002_04202 0.38 -0.8
66,294 - MIT1002_04202 0.38 -0.4
66,389 + MIT1002_04202 0.41 +0.2
66,421 + MIT1002_04202 0.43 -0.5
66,433 + MIT1002_04202 0.43 +0.9
66,452 - MIT1002_04202 0.44 +0.0
66,487 + MIT1002_04202 0.45 -0.0
66,542 - MIT1002_04202 0.47 +0.5
66,588 + MIT1002_04202 0.48 -1.6
66,611 + MIT1002_04202 0.49 -0.2
66,641 - MIT1002_04202 0.50 +0.0
66,641 - MIT1002_04202 0.50 +1.3
66,653 - MIT1002_04202 0.50 -0.2
66,675 + MIT1002_04202 0.51 +0.4
66,761 + MIT1002_04202 0.54 +0.3
66,761 + MIT1002_04202 0.54 +1.7
66,761 - MIT1002_04202 0.54 -0.5
66,769 - MIT1002_04202 0.54 +0.9
66,788 + MIT1002_04202 0.55 -0.1
66,789 + MIT1002_04202 0.55 -0.7
66,807 + MIT1002_04202 0.56 +0.3
66,807 + MIT1002_04202 0.56 -0.2
66,870 - MIT1002_04202 0.58 -0.3
66,883 + MIT1002_04202 0.58 +1.7
66,883 - MIT1002_04202 0.58 -1.3
66,891 - MIT1002_04202 0.59 +0.7
66,908 + MIT1002_04202 0.59 +0.2
67,102 + MIT1002_04202 0.66 -2.0
67,195 + MIT1002_04202 0.69 +0.9
67,195 + MIT1002_04202 0.69 -1.0
67,195 + MIT1002_04202 0.69 +0.5
67,203 - MIT1002_04202 0.69 +0.9
67,289 + MIT1002_04202 0.72 -0.6
67,307 + MIT1002_04202 0.73 +0.2
67,307 + MIT1002_04202 0.73 +0.0
67,315 - MIT1002_04202 0.73 +0.2
67,390 - MIT1002_04202 0.76 -2.1
67,423 - MIT1002_04202 0.77 +0.8
67,472 + MIT1002_04202 0.78 +1.4
67,472 + MIT1002_04202 0.78 -0.2
67,576 + MIT1002_04202 0.82 +1.2
67,607 - MIT1002_04202 0.83 -0.6
67,609 + MIT1002_04202 0.83 +0.8
67,711 - MIT1002_04202 0.87 -0.2
67,720 - MIT1002_04202 0.87 -0.1
67,725 + MIT1002_04202 0.87 +0.6
67,733 - MIT1002_04202 0.87 -0.3
67,793 + MIT1002_04202 0.89 +0.6
67,793 - MIT1002_04202 0.89 -0.6
67,802 - MIT1002_04202 0.90 +0.3
67,802 - MIT1002_04202 0.90 +0.5
67,823 + +0.6
67,831 - +1.7
67,866 - -1.5
67,869 + +1.4
67,877 - -0.7
68,067 - +0.7
68,080 + -0.1
68,080 + +0.4
68,103 + -0.5
68,171 + +0.6
68,179 + -1.3
68,179 - +0.4
68,321 - -2.8
68,336 - +0.9
68,410 - MIT1002_04203 0.15 +0.4
68,465 + MIT1002_04203 0.20 +0.2
68,465 + MIT1002_04203 0.20 +0.5
68,465 + MIT1002_04203 0.20 -0.1
68,473 - MIT1002_04203 0.21 +2.8
68,473 - MIT1002_04203 0.21 -0.4
68,520 - MIT1002_04203 0.26 -1.9
68,599 + MIT1002_04203 0.35 +0.1
68,612 + MIT1002_04203 0.36 -1.6
68,692 + MIT1002_04203 0.45 -2.1
68,711 - MIT1002_04203 0.47 -0.8
68,748 + MIT1002_04203 0.51 -1.0
68,748 + MIT1002_04203 0.51 -3.5
68,799 + MIT1002_04203 0.56 -0.2
68,804 + MIT1002_04203 0.57 +0.6
68,828 - MIT1002_04203 0.59 -0.9
68,852 - MIT1002_04203 0.62 -0.7
69,009 + MIT1002_04203 0.79 +0.3
69,009 + MIT1002_04203 0.79 -0.5
69,009 + MIT1002_04203 0.79 -0.3
69,017 - MIT1002_04203 0.80 -1.0
69,040 + MIT1002_04203 0.82 -0.6
69,048 - MIT1002_04203 0.83 +0.5
69,048 - MIT1002_04203 0.83 -1.3
69,050 + MIT1002_04203 0.83 +0.9
69,050 + MIT1002_04203 0.83 +0.7

Or see this region's nucleotide sequence