Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03790

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4
4,235,200	-				-0.7
4,235,280	-				-0.8
4,235,285	-				-2.8
4,236,152	-				-0.2
4,236,171	-				-1.4
4,236,189	-				-0.3
4,236,253	-				-2.1
4,236,253	-				+0.9
4,236,384	-		MIT1002_03790	0.12	-2.9
4,236,463	+		MIT1002_03790	0.17	+0.2
4,236,472	+		MIT1002_03790	0.17	-0.4
4,236,473	+		MIT1002_03790	0.17	-0.8
4,236,473	+		MIT1002_03790	0.17	-0.1
4,236,473	-		MIT1002_03790	0.17	-2.7
4,236,501	-		MIT1002_03790	0.19	+0.1
4,236,514	-		MIT1002_03790	0.19	-0.4
4,236,633	-		MIT1002_03790	0.26	-1.0
4,236,653	+		MIT1002_03790	0.27	-3.1
4,236,672	-		MIT1002_03790	0.28	+1.6
4,236,684	-		MIT1002_03790	0.28	+1.5
4,236,754	-		MIT1002_03790	0.32	-0.1
4,236,759	+		MIT1002_03790	0.32	-1.2
4,236,806	-		MIT1002_03790	0.35	-0.0
4,236,806	-		MIT1002_03790	0.35	-0.2
4,236,822	+		MIT1002_03790	0.36	-0.8
4,236,831	-		MIT1002_03790	0.36	+1.5
4,236,840	+		MIT1002_03790	0.37	-0.4
4,236,861	-		MIT1002_03790	0.38	-0.7
4,236,880	+		MIT1002_03790	0.39	-1.2
4,236,894	-		MIT1002_03790	0.40	+0.1
4,236,924	-		MIT1002_03790	0.41	+0.4
4,236,939	-		MIT1002_03790	0.42	-0.4
4,236,939	-		MIT1002_03790	0.42	+0.1
4,236,939	-		MIT1002_03790	0.42	-0.3
4,236,939	-		MIT1002_03790	0.42	+0.4
4,236,987	+		MIT1002_03790	0.45	+0.3
4,236,987	-		MIT1002_03790	0.45	-0.5
4,237,011	-		MIT1002_03790	0.46	-0.3
4,237,034	+		MIT1002_03790	0.47	-1.6
4,237,094	+		MIT1002_03790	0.50	+1.3
4,237,138	-		MIT1002_03790	0.53	-2.3
4,237,178	-		MIT1002_03790	0.55	+1.0
4,237,178	-		MIT1002_03790	0.55	-0.3
4,237,180	+		MIT1002_03790	0.55	-0.5
4,237,188	-		MIT1002_03790	0.55	-1.7
4,237,237	+		MIT1002_03790	0.58	+0.3
4,237,237	+		MIT1002_03790	0.58	+0.8
4,237,276	-		MIT1002_03790	0.60	+1.4
4,237,321	+		MIT1002_03790	0.63	+1.8
4,237,321	+		MIT1002_03790	0.63	-0.3
4,237,321	+		MIT1002_03790	0.63	-0.3
4,237,329	-		MIT1002_03790	0.63	-0.4
4,237,329	-		MIT1002_03790	0.63	-1.0
4,237,329	-		MIT1002_03790	0.63	+0.3
4,237,331	-		MIT1002_03790	0.63	+0.2
4,237,341	-		MIT1002_03790	0.64	+0.6
4,237,341	-		MIT1002_03790	0.64	-2.5
4,237,358	-		MIT1002_03790	0.65	-0.3
4,237,463	+		MIT1002_03790	0.70	-3.3
4,237,471	-		MIT1002_03790	0.71	+1.3
4,237,473	+		MIT1002_03790	0.71	-0.0
4,237,473	+		MIT1002_03790	0.71	-0.9
4,237,473	+		MIT1002_03790	0.71	+0.4
4,237,473	+		MIT1002_03790	0.71	-1.4
4,237,473	+		MIT1002_03790	0.71	-1.8
4,237,473	+		MIT1002_03790	0.71	-0.4
4,237,478	+		MIT1002_03790	0.71	+1.6
4,237,481	-		MIT1002_03790	0.71	+0.3
4,237,481	-		MIT1002_03790	0.71	+0.3
4,237,481	-		MIT1002_03790	0.71	-2.0
4,237,481	-		MIT1002_03790	0.71	-2.0
4,237,481	-		MIT1002_03790	0.71	-2.1
4,237,481	-		MIT1002_03790	0.71	-2.4
4,237,481	-		MIT1002_03790	0.71	+0.0
4,237,481	-		MIT1002_03790	0.71	+0.2
4,237,481	-		MIT1002_03790	0.71	-1.7
4,237,488	+		MIT1002_03790	0.72	-0.8
4,237,663	+		MIT1002_03790	0.81	+0.1
4,237,663	+		MIT1002_03790	0.81	+1.3
4,237,671	-		MIT1002_03790	0.81	+0.0
4,237,671	-		MIT1002_03790	0.81	-0.1
4,237,671	-		MIT1002_03790	0.81	-0.3
4,237,688	+		MIT1002_03790	0.82	+0.1
4,237,706	+		MIT1002_03790	0.83	+1.3
4,237,837	-				-2.0
4,237,950	+				+0.7
4,237,959	+				-1.3
4,237,967	-				-0.3
4,237,996	+				-0.7
4,238,017	+				-1.1
4,238,017	+				-0.6
4,238,024	+				-1.7
4,238,068	-				-0.2
4,238,130	+				+1.3
4,238,182	-				-0.2
4,238,198	+				+0.9
4,238,198	+				-0.2
4,238,206	-				-1.7
4,238,213	+				-0.8
4,238,268	+		MIT1002_03791	0.12	+0.9
4,238,280	+		MIT1002_03791	0.13	+0.1
4,238,329	-		MIT1002_03791	0.16	-1.0
4,238,363	-		MIT1002_03791	0.19	+1.6
4,238,365	+		MIT1002_03791	0.19	+0.5
4,238,494	-		MIT1002_03791	0.28	-0.0
4,238,551	-		MIT1002_03791	0.33	-0.3
4,238,580	+		MIT1002_03791	0.35	+0.8
4,238,616	-		MIT1002_03791	0.37	-0.7
4,238,616	-		MIT1002_03791	0.37	+0.1
4,238,673	-		MIT1002_03791	0.42	-0.2
4,238,673	-		MIT1002_03791	0.42	-0.6
4,238,706	+		MIT1002_03791	0.44	-0.3
4,238,898	-		MIT1002_03791	0.58	-0.6