Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03743

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4
4,182,463	-		MIT1002_03742	0.18	-1.2
4,182,464	-		MIT1002_03742	0.19	-2.0
4,182,480	-		MIT1002_03742	0.40	-0.8
4,182,529	-				+0.1
4,182,529	-				-1.2
4,182,616	+				-1.0
4,182,687	-				+0.6
4,182,727	+				+1.7
4,182,727	+				+2.2
4,182,727	+				+1.7
4,182,727	+				+0.6
4,182,727	+				-1.4
4,182,727	+				+2.1
4,182,735	-				-0.9
4,182,735	-				-1.3
4,182,735	-				-1.0
4,182,735	-				+0.1
4,182,735	-				-1.7
4,182,735	-				-0.7
4,182,775	+				-0.5
4,182,782	+				+0.1
4,182,790	+				-3.8
4,182,796	+				+1.5
4,182,865	+				-1.7
4,182,902	-		MIT1002_03743	0.11	+1.7
4,182,902	-		MIT1002_03743	0.11	+0.9
4,182,931	+		MIT1002_03743	0.13	-2.4
4,182,934	-		MIT1002_03743	0.13	-0.8
4,182,945	-		MIT1002_03743	0.14	-0.2
4,182,981	+		MIT1002_03743	0.16	+0.2
4,182,994	+		MIT1002_03743	0.16	+1.0
4,183,006	-		MIT1002_03743	0.17	-1.6
4,183,009	+		MIT1002_03743	0.17	-1.4
4,183,024	-		MIT1002_03743	0.18	-1.1
4,183,024	-		MIT1002_03743	0.18	+0.1
4,183,066	+		MIT1002_03743	0.20	-1.1
4,183,076	+		MIT1002_03743	0.21	-0.4
4,183,082	+		MIT1002_03743	0.21	-1.4
4,183,082	+		MIT1002_03743	0.21	-0.7
4,183,090	-		MIT1002_03743	0.22	+0.2
4,183,090	-		MIT1002_03743	0.22	-0.3
4,183,117	-		MIT1002_03743	0.23	-0.8
4,183,119	+		MIT1002_03743	0.23	+0.0
4,183,127	-		MIT1002_03743	0.24	+1.7
4,183,278	+		MIT1002_03743	0.32	+0.9
4,183,331	+		MIT1002_03743	0.35	-0.2
4,183,339	-		MIT1002_03743	0.35	+0.9
4,183,405	+		MIT1002_03743	0.39	+0.5
4,183,469	+		MIT1002_03743	0.42	-2.2
4,183,470	-		MIT1002_03743	0.42	-1.2
4,183,482	+		MIT1002_03743	0.43	-0.5
4,183,491	-		MIT1002_03743	0.43	-1.3
4,183,491	-		MIT1002_03743	0.43	-2.3
4,183,504	+		MIT1002_03743	0.44	+1.2
4,183,510	-		MIT1002_03743	0.44	-0.8
4,183,524	+		MIT1002_03743	0.45	-0.0
4,183,533	+		MIT1002_03743	0.46	-0.3
4,183,533	+		MIT1002_03743	0.46	-0.1
4,183,551	-		MIT1002_03743	0.47	-1.2
4,183,577	+		MIT1002_03743	0.48	+0.1
4,183,673	-		MIT1002_03743	0.53	+0.1
4,183,677	-		MIT1002_03743	0.53	+2.2
4,183,705	+		MIT1002_03743	0.55	+0.7
4,183,713	-		MIT1002_03743	0.55	-0.9
4,183,819	+		MIT1002_03743	0.61	+0.2
4,183,988	-		MIT1002_03743	0.70	-0.3
4,184,037	+		MIT1002_03743	0.73	+0.8
4,184,082	+		MIT1002_03743	0.75	+0.3
4,184,094	+		MIT1002_03743	0.76	+0.5
4,184,149	-		MIT1002_03743	0.79	+0.1
4,184,158	+		MIT1002_03743	0.80	-0.5
4,184,158	+		MIT1002_03743	0.80	+0.1
4,184,275	-		MIT1002_03743	0.86	-0.3
4,184,276	-		MIT1002_03743	0.86	+0.3
4,184,278	+		MIT1002_03743	0.86	-1.0
4,184,282	-		MIT1002_03743	0.86	+0.5
4,184,288	+		MIT1002_03743	0.87	+0.3
4,184,322	+		MIT1002_03743	0.88	-0.9
4,184,375	+				+0.3
4,184,411	+				-0.1
4,184,417	+				-0.5
4,184,425	-				-0.9
4,184,425	-				-0.4
4,184,427	+				+0.6
4,184,435	-				+1.1
4,184,448	-				+1.5
4,184,481	+				-1.3
4,184,562	+				+0.4
4,184,570	-				-0.0
4,184,622	+				+0.7
4,184,622	+				-1.1
4,184,630	-				+1.1
4,184,694	-				-2.4
4,184,694	-				-0.1
4,184,694	-				-2.1
4,184,694	-				-0.2
4,184,722	+				+1.2
4,184,723	-				-2.2
4,184,786	+				-2.0
4,184,831	-				-1.5
4,184,834	+				-0.9
4,184,855	-		MIT1002_03744	0.13	-2.1
4,184,885	+		MIT1002_03744	0.18	-0.7
4,184,885	+		MIT1002_03744	0.18	-1.7
4,184,885	+		MIT1002_03744	0.18	-1.9
4,184,901	+		MIT1002_03744	0.20	+0.3
4,184,965	+		MIT1002_03744	0.31	-0.7
4,184,965	+		MIT1002_03744	0.31	-0.8
4,184,965	+		MIT1002_03744	0.31	-2.6
4,185,120	-		MIT1002_03744	0.55	-1.2
4,185,186	+		MIT1002_03744	0.66	-0.6
4,185,229	+		MIT1002_03744	0.73	-1.0
4,185,317	+		MIT1002_03744	0.87	-0.7
4,185,353	+				-0.9
4,185,367	-				-0.7
4,185,394	-				-2.2
4,185,400	-				+0.1
4,185,440	+				+0.7
4,185,459	-				-2.7