Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03426

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4
3,827,845	+				-2.7
3,827,877	+				-0.2
3,827,877	+				+0.4
3,827,883	-				+0.9
3,827,885	-				+1.2
3,827,890	-				+1.5
3,827,897	+				-0.8
3,827,961	-				-0.6
3,827,987	-				+0.8
3,828,039	-		MIT1002_03425	0.16	+0.1
3,828,077	-		MIT1002_03425	0.21	+0.3
3,828,106	+		MIT1002_03425	0.24	+1.2
3,828,167	+		MIT1002_03425	0.32	+0.2
3,828,197	+		MIT1002_03425	0.36	+0.6
3,828,197	+		MIT1002_03425	0.36	-0.6
3,828,205	-		MIT1002_03425	0.37	-0.5
3,828,205	-		MIT1002_03425	0.37	-0.7
3,828,205	-		MIT1002_03425	0.37	+1.0
3,828,205	-		MIT1002_03425	0.37	+2.2
3,828,225	-		MIT1002_03425	0.39	+1.1
3,828,233	+		MIT1002_03425	0.40	-0.2
3,828,278	+		MIT1002_03425	0.46	-3.2
3,828,278	+		MIT1002_03425	0.46	-0.2
3,828,278	+		MIT1002_03425	0.46	+0.2
3,828,286	-		MIT1002_03425	0.46	-0.6
3,828,286	-		MIT1002_03425	0.46	-0.1
3,828,289	-		MIT1002_03425	0.47	-1.0
3,828,347	-		MIT1002_03425	0.54	-0.2
3,828,400	-		MIT1002_03425	0.61	+0.0
3,828,422	+		MIT1002_03425	0.63	-0.3
3,828,554	-		MIT1002_03425	0.79	-0.3
3,828,596	-		MIT1002_03425	0.85	-0.9
3,828,666	-				+1.8
3,828,666	-				+0.8
3,828,671	-				+0.3
3,828,671	-				+0.3
3,828,673	+				+0.6
3,828,699	-				+0.9
3,828,769	+				-0.9
3,828,769	+				+0.4
3,828,769	+				-1.3
3,828,769	+				-0.0
3,828,769	+				-0.4
3,828,769	+				-0.2
3,828,777	-				+0.7
3,828,777	-				-2.4
3,828,777	-				+1.8
3,828,791	+				+0.1
3,828,854	-				+0.9
3,828,866	-				-0.0
3,828,964	+				-1.7
3,828,969	+				+0.4
3,828,985	+		MIT1002_03426	0.11	-2.5
3,828,992	+		MIT1002_03426	0.11	-3.0
3,828,993	-		MIT1002_03426	0.11	-1.0
3,828,993	-		MIT1002_03426	0.11	-4.2
3,829,062	+		MIT1002_03426	0.16	-3.0
3,829,070	-		MIT1002_03426	0.17	-1.4
3,829,107	+		MIT1002_03426	0.19	-3.8
3,829,131	+		MIT1002_03426	0.21	-2.6
3,829,159	-		MIT1002_03426	0.23	-1.9
3,829,223	-		MIT1002_03426	0.27	-1.8
3,829,232	-		MIT1002_03426	0.28	-0.1
3,829,340	-		MIT1002_03426	0.36	-2.2
3,829,415	+		MIT1002_03426	0.41	-2.1
3,829,420	+		MIT1002_03426	0.41	-3.1
3,829,420	+		MIT1002_03426	0.41	-0.8
3,829,420	+		MIT1002_03426	0.41	-1.7
3,829,422	+		MIT1002_03426	0.41	-1.4
3,829,428	-		MIT1002_03426	0.42	-1.2
3,829,428	-		MIT1002_03426	0.42	-1.7
3,829,428	-		MIT1002_03426	0.42	-0.8
3,829,466	+		MIT1002_03426	0.44	-0.8
3,829,479	+		MIT1002_03426	0.45	-2.6
3,829,487	-		MIT1002_03426	0.46	-1.8
3,829,489	-		MIT1002_03426	0.46	-2.2
3,829,516	-		MIT1002_03426	0.48	-2.5
3,829,521	+		MIT1002_03426	0.48	-0.3
3,829,529	-		MIT1002_03426	0.49	-2.6
3,829,570	+		MIT1002_03426	0.52	+0.2
3,829,612	+		MIT1002_03426	0.55	+0.4
3,829,612	+		MIT1002_03426	0.55	-1.4
3,829,628	-		MIT1002_03426	0.56	-2.3
3,829,654	+		MIT1002_03426	0.58	-2.4
3,829,654	+		MIT1002_03426	0.58	-0.6
3,829,662	-		MIT1002_03426	0.58	-2.0
3,829,701	+		MIT1002_03426	0.61	-1.9
3,829,769	+		MIT1002_03426	0.66	-4.8
3,829,779	+		MIT1002_03426	0.66	+0.3
3,829,779	+		MIT1002_03426	0.66	-2.1
3,829,787	-		MIT1002_03426	0.67	-0.3
3,829,787	-		MIT1002_03426	0.67	-1.6
3,829,792	+		MIT1002_03426	0.67	-2.0
3,829,792	+		MIT1002_03426	0.67	-1.7
3,829,792	+		MIT1002_03426	0.67	-1.8
3,829,853	+		MIT1002_03426	0.72	-2.5
3,829,861	-		MIT1002_03426	0.72	-1.4
3,829,908	-		MIT1002_03426	0.76	-3.6
3,829,991	-		MIT1002_03426	0.81	-0.9
3,830,034	+		MIT1002_03426	0.84	-2.2
3,830,218	+				+0.0
3,830,355	-				-0.8
3,830,429	-				+0.6
3,830,469	-				-1.0
3,830,470	-				-0.1
3,830,490	-				-0.7
3,830,528	+				-0.7
3,830,528	+				+0.2
3,830,562	-				-0.7
3,830,614	+				+0.1
3,830,650	+		MIT1002_03427	0.11	-0.1
3,830,658	-		MIT1002_03427	0.13	-0.3
3,830,662	+		MIT1002_03427	0.13	-1.6
3,830,683	-		MIT1002_03427	0.16	-0.3
3,830,730	+		MIT1002_03427	0.22	+0.6
3,830,785	-		MIT1002_03427	0.30	+0.2
3,830,843	-		MIT1002_03427	0.38	-1.5
3,830,875	-		MIT1002_03427	0.42	+0.4
3,830,891	+		MIT1002_03427	0.45	+0.4
3,830,896	+		MIT1002_03427	0.45	+0.2
3,830,897	+		MIT1002_03427	0.45	+0.0
3,830,905	-		MIT1002_03427	0.47	+0.0
3,830,958	-		MIT1002_03427	0.54	+0.0
3,830,979	+		MIT1002_03427	0.57	+0.6
3,831,057	+		MIT1002_03427	0.67	-0.9
3,831,119	-		MIT1002_03427	0.76	+0.0
3,831,142	+		MIT1002_03427	0.79	+0.5
3,831,165	+		MIT1002_03427	0.82	-0.6
3,831,187	-		MIT1002_03427	0.85	-0.1
3,831,208	+		MIT1002_03427	0.88	+0.2
3,831,208	+		MIT1002_03427	0.88	+1.6
3,831,216	-		MIT1002_03427	0.89	+2.9
3,831,216	-		MIT1002_03427	0.89	-1.3
3,831,222	+				+1.1
3,831,230	-				-0.1
3,831,246	+				+2.6