Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03348

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4
3,742,279	-		MIT1002_03346	0.50	+1.5
3,742,279	-		MIT1002_03346	0.50	+0.2
3,742,419	+		MIT1002_03346	0.73	+0.9
3,742,419	+		MIT1002_03346	0.73	-0.3
3,742,419	+		MIT1002_03346	0.73	+1.1
3,742,419	+		MIT1002_03346	0.73	+0.3
3,742,419	+		MIT1002_03346	0.73	-1.1
3,742,419	+		MIT1002_03346	0.73	-0.5
3,742,419	+		MIT1002_03346	0.73	-2.0
3,742,419	+		MIT1002_03346	0.73	+1.1
3,742,419	+		MIT1002_03346	0.73	+1.7
3,742,419	+		MIT1002_03346	0.73	+0.9
3,742,419	+		MIT1002_03346	0.73	+0.7
3,742,419	+		MIT1002_03346	0.73	-0.1
3,742,419	+		MIT1002_03346	0.73	-0.3
3,742,419	+		MIT1002_03346	0.73	+0.3
3,742,419	+		MIT1002_03346	0.73	+0.3
3,742,419	+		MIT1002_03346	0.73	-0.4
3,742,419	+		MIT1002_03346	0.73	+0.4
3,742,419	+		MIT1002_03346	0.73	+0.4
3,742,419	+		MIT1002_03346	0.73	+0.5
3,742,419	+		MIT1002_03346	0.73	+1.1
3,742,419	+		MIT1002_03346	0.73	+0.3
3,742,419	+		MIT1002_03346	0.73	-0.2
3,742,419	+		MIT1002_03346	0.73	-0.4
3,742,419	+		MIT1002_03346	0.73	-0.2
3,742,427	-		MIT1002_03346	0.75	+0.8
3,742,427	-		MIT1002_03346	0.75	-0.1
3,742,427	-		MIT1002_03346	0.75	+2.4
3,742,427	-		MIT1002_03346	0.75	-0.4
3,742,427	-		MIT1002_03346	0.75	+0.1
3,742,427	-		MIT1002_03346	0.75	-1.5
3,742,427	-		MIT1002_03346	0.75	+1.2
3,742,427	-		MIT1002_03346	0.75	-0.8
3,742,427	-		MIT1002_03346	0.75	-0.3
3,742,427	-		MIT1002_03346	0.75	+0.1
3,742,427	-		MIT1002_03346	0.75	-2.5
3,742,427	-		MIT1002_03346	0.75	+0.5
3,742,427	-		MIT1002_03346	0.75	+0.1
3,742,427	-		MIT1002_03346	0.75	-0.8
3,742,427	-		MIT1002_03346	0.75	+0.8
3,742,427	-		MIT1002_03346	0.75	-1.8
3,742,427	-		MIT1002_03346	0.75	-0.7
3,742,427	-		MIT1002_03346	0.75	-0.0
3,742,427	-		MIT1002_03346	0.75	+0.1
3,742,427	-		MIT1002_03346	0.75	-0.7
3,742,427	-		MIT1002_03346	0.75	+1.2
3,742,427	-		MIT1002_03346	0.75	-0.8
3,742,427	-		MIT1002_03346	0.75	-2.1
3,742,470	+		MIT1002_03346	0.82	+0.4
3,742,478	-		MIT1002_03346	0.83	-1.7
3,742,478	-		MIT1002_03346	0.83	+0.3
3,742,560	-				-0.2
3,742,628	-				+0.3
3,742,746	+		MIT1002_03347	0.59	-1.0
3,742,754	-		MIT1002_03347	0.64	+1.3
3,742,914	+				-0.3
3,742,914	+				+1.0
3,743,016	+				-0.2
3,743,112	-				+0.3
3,743,124	+				+0.8
3,743,176	+				+0.3
3,743,176	+				+0.1
3,743,184	-				+0.1
3,743,184	-				-0.4
3,743,186	+				+0.1
3,743,194	-				+0.9
3,743,230	+				-0.8
3,743,230	+				-0.2
3,743,279	+				-0.9
3,743,279	+				-1.5
3,743,287	-				+0.2
3,743,368	+		MIT1002_03348	0.13	+0.1
3,743,376	-		MIT1002_03348	0.14	+0.4
3,743,477	-		MIT1002_03348	0.18	+0.7
3,743,479	-		MIT1002_03348	0.18	-0.6
3,743,525	-		MIT1002_03348	0.20	-0.1
3,743,536	-		MIT1002_03348	0.21	+0.7
3,743,558	+		MIT1002_03348	0.22	-1.5
3,743,558	+		MIT1002_03348	0.22	-0.2
3,743,566	-		MIT1002_03348	0.22	-0.9
3,743,566	-		MIT1002_03348	0.22	-1.5
3,743,566	-		MIT1002_03348	0.22	-0.7
3,743,615	-		MIT1002_03348	0.24	+0.5
3,743,615	-		MIT1002_03348	0.24	+0.1
3,743,626	+		MIT1002_03348	0.25	+0.7
3,743,635	+		MIT1002_03348	0.25	-0.3
3,743,693	+		MIT1002_03348	0.28	+1.2
3,743,703	+		MIT1002_03348	0.28	+0.8
3,743,703	+		MIT1002_03348	0.28	-0.5
3,743,721	-		MIT1002_03348	0.29	-0.8
3,743,721	-		MIT1002_03348	0.29	+0.4
3,743,775	+		MIT1002_03348	0.32	+0.6
3,743,775	+		MIT1002_03348	0.32	+0.7
3,743,799	+		MIT1002_03348	0.33	-0.3
3,743,804	+		MIT1002_03348	0.33	-0.7
3,743,805	-		MIT1002_03348	0.33	+0.2
3,743,841	+		MIT1002_03348	0.35	+0.1
3,743,849	-		MIT1002_03348	0.35	+0.3
3,743,872	-		MIT1002_03348	0.36	+0.5
3,744,090	+		MIT1002_03348	0.46	-0.7
3,744,129	-		MIT1002_03348	0.48	+0.7
3,744,161	+		MIT1002_03348	0.49	-0.6
3,744,169	-		MIT1002_03348	0.49	-1.0
3,744,177	-		MIT1002_03348	0.50	+0.2
3,744,246	+		MIT1002_03348	0.53	+0.4
3,744,264	-		MIT1002_03348	0.54	-0.3
3,744,290	+		MIT1002_03348	0.55	+1.8
3,744,290	+		MIT1002_03348	0.55	+0.7
3,744,293	-		MIT1002_03348	0.55	+0.3
3,744,322	+		MIT1002_03348	0.56	-1.7
3,744,353	-		MIT1002_03348	0.58	+0.2
3,744,386	+		MIT1002_03348	0.59	+1.0
3,744,413	+		MIT1002_03348	0.60	-1.0
3,744,413	+		MIT1002_03348	0.60	-1.2
3,744,419	-		MIT1002_03348	0.61	-1.5
3,744,421	-		MIT1002_03348	0.61	-0.6
3,744,421	-		MIT1002_03348	0.61	+0.4
3,744,421	-		MIT1002_03348	0.61	+0.2
3,744,421	-		MIT1002_03348	0.61	-1.0
3,744,421	-		MIT1002_03348	0.61	-0.9
3,744,421	-		MIT1002_03348	0.61	-1.8
3,744,421	-		MIT1002_03348	0.61	+1.4
3,744,471	+		MIT1002_03348	0.63	+0.3
3,744,518	+		MIT1002_03348	0.65	-1.0
3,744,548	+		MIT1002_03348	0.66	-0.2
3,744,556	-		MIT1002_03348	0.67	-0.4
3,744,581	+		MIT1002_03348	0.68	-0.4
3,744,598	+		MIT1002_03348	0.69	+0.2
3,744,608	+		MIT1002_03348	0.69	-4.6
3,744,633	-		MIT1002_03348	0.70	+3.1
3,744,690	+		MIT1002_03348	0.73	+0.3
3,744,826	+		MIT1002_03348	0.79	-0.6
3,744,834	-		MIT1002_03348	0.79	+0.4
3,744,834	-		MIT1002_03348	0.79	-0.0
3,744,904	-		MIT1002_03348	0.83	-1.7
3,745,293	-				-0.7
3,745,350	+		MIT1002_03349	0.10	+1.4
3,745,350	+		MIT1002_03349	0.10	-0.3
3,745,421	+		MIT1002_03349	0.20	-0.2
3,745,423	+		MIT1002_03349	0.20	+1.8
3,745,423	+		MIT1002_03349	0.20	-0.0
3,745,431	-		MIT1002_03349	0.22	+0.4
3,745,462	+		MIT1002_03349	0.26	-0.1
3,745,514	-		MIT1002_03349	0.33	-0.6
3,745,583	+		MIT1002_03349	0.43	-0.2
3,745,583	+		MIT1002_03349	0.43	+0.8
3,745,591	-		MIT1002_03349	0.44	-0.5
3,745,591	-		MIT1002_03349	0.44	-1.1
3,745,591	-		MIT1002_03349	0.44	+0.9
3,745,607	+		MIT1002_03349	0.46	-1.4
3,745,610	-		MIT1002_03349	0.47	-0.1
3,745,615	-		MIT1002_03349	0.47	-0.2
3,745,615	-		MIT1002_03349	0.47	+0.2
3,745,615	-		MIT1002_03349	0.47	+1.1
3,745,615	-		MIT1002_03349	0.47	+1.0
3,745,625	-		MIT1002_03349	0.49	+0.5
3,745,629	-		MIT1002_03349	0.49	+0.5
3,745,652	+		MIT1002_03349	0.53	+1.4
3,745,653	-		MIT1002_03349	0.53	-0.3
3,745,655	-		MIT1002_03349	0.53	-0.1
3,745,862	+		MIT1002_03349	0.82	-0.6
3,745,867	+		MIT1002_03349	0.83	-0.4
3,745,867	+		MIT1002_03349	0.83	+0.6
3,745,869	+		MIT1002_03349	0.83	-0.1
3,745,875	-		MIT1002_03349	0.84	-0.6
3,745,971	-				+0.8
3,745,998	+				+1.0
3,746,030	-				+1.4
3,746,061	+				+0.5
3,746,066	+				+1.6
3,746,066	+				-0.0
3,746,066	+				-0.7
3,746,066	+				-0.1
3,746,066	+				-1.3
3,746,066	+				-0.3
3,746,066	+				+0.4
3,746,074	-				-0.5
3,746,074	-				-0.1
3,746,074	-				+1.6
3,746,074	-				-1.3
3,746,074	-				-1.1
3,746,074	-				-0.8
3,746,074	-				-0.1
3,746,221	+		MIT1002_03350	0.15	-1.2
3,746,221	+		MIT1002_03350	0.15	+1.5
3,746,227	-		MIT1002_03350	0.16	-0.1
3,746,277	-		MIT1002_03350	0.21	+0.9