Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03291

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4
3,666,291	-		MIT1002_03290	0.61	-0.6
3,666,308	+		MIT1002_03290	0.62	-2.0
3,666,433	+		MIT1002_03290	0.69	-0.7
3,666,433	+		MIT1002_03290	0.69	-1.0
3,666,487	+		MIT1002_03290	0.72	-1.6
3,666,518	-		MIT1002_03290	0.74	-2.2
3,666,565	-		MIT1002_03290	0.77	-1.2
3,666,590	+		MIT1002_03290	0.78	-0.5
3,666,739	-		MIT1002_03290	0.87	-1.2
3,666,762	+		MIT1002_03290	0.88	+0.8
3,666,770	-		MIT1002_03290	0.89	-2.0
3,666,830	+				+0.1
3,666,863	-				-2.7
3,666,921	-				-1.6
3,666,953	-				+0.8
3,667,011	+				-0.6
3,667,019	-				+0.3
3,667,019	-				-0.5
3,667,019	-				-0.8
3,667,019	-				-1.0
3,667,043	+				-0.3
3,667,051	-				-1.4
3,667,104	+				-1.0
3,667,123	+				-0.7
3,667,133	+				+0.7
3,667,133	+				-1.3
3,667,133	+				-1.6
3,667,141	-				-0.2
3,667,142	+				-2.1
3,667,143	+				-0.4
3,667,196	-				-2.5
3,667,205	+				-0.5
3,667,210	-				-2.5
3,667,240	+				-1.0
3,667,240	+				-0.5
3,667,248	+				+0.5
3,667,256	+				+0.8
3,667,256	+				-0.1
3,667,302	+				-2.4
3,667,334	-				+0.8
3,667,336	+		MIT1002_03291	0.10	-0.9
3,667,338	+		MIT1002_03291	0.10	-3.1
3,667,338	+		MIT1002_03291	0.10	-1.0
3,667,346	-		MIT1002_03291	0.10	+0.5
3,667,355	+		MIT1002_03291	0.11	-0.9
3,667,424	+		MIT1002_03291	0.14	+0.3
3,667,437	+		MIT1002_03291	0.14	-0.7
3,667,445	-		MIT1002_03291	0.14	+1.4
3,667,480	-		MIT1002_03291	0.16	-2.6
3,667,514	+		MIT1002_03291	0.17	-0.1
3,667,517	-		MIT1002_03291	0.17	-0.0
3,667,536	+		MIT1002_03291	0.18	-2.9
3,667,550	+		MIT1002_03291	0.19	-0.7
3,667,601	-		MIT1002_03291	0.21	-0.3
3,667,610	-		MIT1002_03291	0.21	-2.4
3,667,625	+		MIT1002_03291	0.22	-1.3
3,667,683	+		MIT1002_03291	0.24	-2.1
3,667,725	-		MIT1002_03291	0.26	-1.7
3,667,742	+		MIT1002_03291	0.26	-0.7
3,667,748	-		MIT1002_03291	0.27	+0.1
3,667,885	-		MIT1002_03291	0.32	-1.2
3,667,909	+		MIT1002_03291	0.33	-2.1
3,667,936	-		MIT1002_03291	0.34	-1.9
3,667,952	+		MIT1002_03291	0.35	-1.6
3,667,952	+		MIT1002_03291	0.35	-1.5
3,667,960	-		MIT1002_03291	0.35	+0.1
3,667,961	-		MIT1002_03291	0.35	+0.1
3,668,006	-		MIT1002_03291	0.37	-1.2
3,668,127	+		MIT1002_03291	0.42	-0.7
3,668,128	+		MIT1002_03291	0.42	-0.7
3,668,136	-		MIT1002_03291	0.42	-1.7
3,668,136	-		MIT1002_03291	0.42	-1.8
3,668,136	-		MIT1002_03291	0.42	-1.0
3,668,136	-		MIT1002_03291	0.42	-0.6
3,668,136	-		MIT1002_03291	0.42	-1.0
3,668,175	-		MIT1002_03291	0.44	-2.7
3,668,185	-		MIT1002_03291	0.44	-1.5
3,668,245	+		MIT1002_03291	0.46	-1.3
3,668,282	-		MIT1002_03291	0.48	-2.3
3,668,333	+		MIT1002_03291	0.50	-0.0
3,668,340	-		MIT1002_03291	0.50	-2.1
3,668,341	-		MIT1002_03291	0.50	+2.3
3,668,367	-		MIT1002_03291	0.51	-2.2
3,668,397	+		MIT1002_03291	0.53	+1.0
3,668,505	-		MIT1002_03291	0.57	+1.3
3,668,545	-		MIT1002_03291	0.59	-0.3
3,668,552	+		MIT1002_03291	0.59	-0.8
3,668,558	+		MIT1002_03291	0.59	-1.0
3,668,558	+		MIT1002_03291	0.59	-1.4
3,668,566	-		MIT1002_03291	0.59	-0.9
3,668,568	+		MIT1002_03291	0.59	+2.2
3,668,576	-		MIT1002_03291	0.60	-1.5
3,668,605	+		MIT1002_03291	0.61	-0.1
3,668,608	+		MIT1002_03291	0.61	-0.3
3,668,610	+		MIT1002_03291	0.61	-1.0
3,668,613	-		MIT1002_03291	0.61	+0.7
3,668,615	+		MIT1002_03291	0.61	+0.4
3,668,618	+		MIT1002_03291	0.61	+0.0
3,668,618	+		MIT1002_03291	0.61	-0.9
3,668,618	+		MIT1002_03291	0.61	-1.9
3,668,618	-		MIT1002_03291	0.61	-1.3
3,668,623	-		MIT1002_03291	0.62	-1.5
3,668,626	-		MIT1002_03291	0.62	-0.1
3,668,628	-		MIT1002_03291	0.62	-2.1
3,668,701	-		MIT1002_03291	0.65	-0.6
3,668,732	+		MIT1002_03291	0.66	-0.8
3,668,732	+		MIT1002_03291	0.66	-0.6
3,668,740	-		MIT1002_03291	0.66	-0.9
3,668,756	-		MIT1002_03291	0.67	-1.0
3,668,757	-		MIT1002_03291	0.67	-1.1
3,668,801	+		MIT1002_03291	0.69	-0.0
3,668,801	+		MIT1002_03291	0.69	-2.0
3,668,809	-		MIT1002_03291	0.69	-0.6
3,668,809	-		MIT1002_03291	0.69	-2.3
3,668,818	+		MIT1002_03291	0.69	-1.6
3,668,826	+		MIT1002_03291	0.70	+0.6
3,668,826	+		MIT1002_03291	0.70	-0.9
3,668,826	+		MIT1002_03291	0.70	-0.1
3,668,826	-		MIT1002_03291	0.70	-2.7
3,668,828	+		MIT1002_03291	0.70	-1.7
3,668,834	-		MIT1002_03291	0.70	-0.4
3,668,834	-		MIT1002_03291	0.70	-0.0
3,668,834	-		MIT1002_03291	0.70	-2.2
3,668,834	-		MIT1002_03291	0.70	-0.5
3,668,834	-		MIT1002_03291	0.70	+0.6
3,668,834	-		MIT1002_03291	0.70	+0.3
3,668,845	+		MIT1002_03291	0.71	+0.2
3,668,904	-		MIT1002_03291	0.73	-0.6
3,668,989	-		MIT1002_03291	0.76	-0.6
3,668,989	-		MIT1002_03291	0.76	-1.3
3,669,067	-		MIT1002_03291	0.79	-1.6
3,669,169	-		MIT1002_03291	0.84	+1.0
3,669,177	-		MIT1002_03291	0.84	-1.4
3,669,183	+		MIT1002_03291	0.84	-1.7
3,669,191	-		MIT1002_03291	0.84	-0.7
3,669,191	-		MIT1002_03291	0.84	-1.9
3,669,245	+		MIT1002_03291	0.87	-2.2
3,669,263	-		MIT1002_03291	0.87	-0.6
3,669,263	-		MIT1002_03291	0.87	-1.8
3,669,263	-		MIT1002_03291	0.87	-1.4
3,669,309	+		MIT1002_03291	0.89	-1.0
3,669,317	-		MIT1002_03291	0.89	-0.2
3,669,374	+				-1.1
3,669,374	+				-0.1
3,669,522	-				-1.3
3,669,561	-				-1.3
3,669,749	+				+0.3
3,669,779	-				+0.0
3,669,779	-				-0.2
3,669,803	+				+1.2
3,669,806	+				-1.0
3,669,811	-				-2.5
3,669,819	-				-0.6
3,669,819	-				+0.3
3,669,819	-				-0.3
3,669,825	+				+3.0
3,669,852	-				+8.8
3,669,945	-				-0.4
3,669,945	-				-0.2
3,669,970	+				+0.0
3,669,977	+				+0.0
3,669,983	-				-2.0
3,670,073	+				+0.5
3,670,073	+				+0.3
3,670,217	-				-0.2
3,670,233	+				-0.0
3,670,573	+		MIT1002_03292	0.31	+0.1