Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03287

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4
3,661,859	-				-1.2
3,661,991	+				-1.6
3,662,021	+		MIT1002_03286	0.11	-2.3
3,662,027	+		MIT1002_03286	0.11	-2.1
3,662,029	+		MIT1002_03286	0.12	-2.5
3,662,029	+		MIT1002_03286	0.12	-1.7
3,662,040	-		MIT1002_03286	0.13	-1.0
3,662,060	-		MIT1002_03286	0.15	-0.3
3,662,089	-		MIT1002_03286	0.18	+0.3
3,662,106	-		MIT1002_03286	0.20	-2.1
3,662,124	+		MIT1002_03286	0.22	-1.5
3,662,178	-		MIT1002_03286	0.28	-1.8
3,662,178	-		MIT1002_03286	0.28	-1.7
3,662,191	+		MIT1002_03286	0.29	-0.5
3,662,206	+		MIT1002_03286	0.31	-3.0
3,662,207	-		MIT1002_03286	0.31	-1.9
3,662,240	-		MIT1002_03286	0.34	-1.5
3,662,240	-		MIT1002_03286	0.34	-0.3
3,662,240	-		MIT1002_03286	0.34	-2.5
3,662,240	-		MIT1002_03286	0.34	-0.8
3,662,241	-		MIT1002_03286	0.35	-2.1
3,662,254	+		MIT1002_03286	0.36	-2.5
3,662,326	+		MIT1002_03286	0.44	+0.5
3,662,336	-		MIT1002_03286	0.45	-1.3
3,662,409	+		MIT1002_03286	0.53	-2.3
3,662,437	-		MIT1002_03286	0.56	-2.5
3,662,461	-		MIT1002_03286	0.58	-1.2
3,662,548	+		MIT1002_03286	0.68	-0.9
3,662,548	+		MIT1002_03286	0.68	-2.0
3,662,548	+		MIT1002_03286	0.68	-1.2
3,662,598	-		MIT1002_03286	0.73	-2.4
3,662,642	+		MIT1002_03286	0.78	-0.7
3,662,689	-		MIT1002_03286	0.83	+0.5
3,662,728	-		MIT1002_03286	0.87	-1.8
3,662,771	+				-0.2
3,662,771	+				-1.7
3,662,771	+				-1.7
3,662,779	-				-2.1
3,662,779	-				+0.7
3,662,786	-				-1.2
3,662,838	+				+1.6
3,663,016	+		MIT1002_03287	0.22	-1.4
3,663,024	-		MIT1002_03287	0.24	-0.7
3,663,169	-		MIT1002_03287	0.43	-1.6
3,663,176	+		MIT1002_03287	0.44	-1.1
3,663,204	-		MIT1002_03287	0.47	-0.5
3,663,340	+		MIT1002_03287	0.65	-0.6
3,663,371	-		MIT1002_03287	0.69	-2.5
3,663,402	+		MIT1002_03287	0.74	-2.7
3,663,404	+		MIT1002_03287	0.74	-0.8
3,663,419	-		MIT1002_03287	0.76	-1.6
3,663,455	-		MIT1002_03287	0.81	-2.1
3,663,472	+		MIT1002_03287	0.83	+2.0
3,663,472	+		MIT1002_03287	0.83	-2.6
3,663,474	+		MIT1002_03287	0.83	-0.7
3,663,633	+				+0.5
3,663,723	+		MIT1002_03288	0.31	-0.6
3,663,772	+		MIT1002_03288	0.44	-0.8
3,663,772	+		MIT1002_03288	0.44	-3.6
3,663,772	+		MIT1002_03288	0.44	-2.0
3,663,780	-		MIT1002_03288	0.46	-0.8
3,663,787	+		MIT1002_03288	0.48	-1.3
3,663,823	-		MIT1002_03288	0.57	-3.5
3,663,881	+		MIT1002_03288	0.72	+0.1
3,663,891	+		MIT1002_03288	0.74	-0.0
3,663,956	-				-1.3
3,664,078	+				-2.7
3,664,078	+				-1.0
3,664,086	-				-2.0
3,664,129	+		MIT1002_03289	0.13	-1.2
3,664,129	+		MIT1002_03289	0.13	-0.7
3,664,137	-		MIT1002_03289	0.14	-1.0
3,664,137	-		MIT1002_03289	0.14	-1.3
3,664,142	-		MIT1002_03289	0.14	-1.0
3,664,142	-		MIT1002_03289	0.14	-1.5
3,664,276	+		MIT1002_03289	0.25	-1.6
3,664,284	+		MIT1002_03289	0.26	-0.4
3,664,292	-		MIT1002_03289	0.27	-2.5
3,664,292	-		MIT1002_03289	0.27	-0.0
3,664,292	-		MIT1002_03289	0.27	-2.0
3,664,373	+		MIT1002_03289	0.34	-0.3
3,664,453	-		MIT1002_03289	0.41	-1.2
3,664,458	+		MIT1002_03289	0.41	-0.6
3,664,458	+		MIT1002_03289	0.41	+0.5
3,664,466	-		MIT1002_03289	0.42	-1.0
3,664,485	-		MIT1002_03289	0.43	+0.3
3,664,579	-		MIT1002_03289	0.52	+0.6