Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02633

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4
2,925,396	-				-2.0
2,925,469	-				-2.9
2,925,522	+				-3.4
2,925,522	-				-8.9
2,925,522	-				-4.4
2,925,524	+				-5.3
2,925,551	-		MIT1002_02632	0.11	-3.1
2,925,622	+		MIT1002_02632	0.19	-2.2
2,925,644	-		MIT1002_02632	0.21	-4.5
2,925,654	+		MIT1002_02632	0.22	-0.6
2,925,654	-		MIT1002_02632	0.22	-5.1
2,925,662	-		MIT1002_02632	0.23	-4.6
2,925,735	+		MIT1002_02632	0.31	-1.7
2,925,735	+		MIT1002_02632	0.31	-2.5
2,925,735	+		MIT1002_02632	0.31	-0.3
2,925,735	+		MIT1002_02632	0.31	-2.1
2,925,735	-		MIT1002_02632	0.31	-2.5
2,925,738	-		MIT1002_02632	0.32	-5.4
2,925,745	+		MIT1002_02632	0.32	-1.5
2,925,745	+		MIT1002_02632	0.32	-0.6
2,925,765	+		MIT1002_02632	0.35	-2.6
2,925,839	+		MIT1002_02632	0.43	-0.3
2,925,888	-		MIT1002_02632	0.48	-1.6
2,925,901	-		MIT1002_02632	0.50	-4.9
2,925,902	-		MIT1002_02632	0.50	-2.3
2,925,913	-		MIT1002_02632	0.51	-2.0
2,925,918	-		MIT1002_02632	0.51	-2.3
2,925,918	-		MIT1002_02632	0.51	-1.6
2,925,937	+		MIT1002_02632	0.54	-2.1
2,925,944	-		MIT1002_02632	0.54	-2.8
2,925,945	-		MIT1002_02632	0.54	-3.6
2,925,973	+		MIT1002_02632	0.58	-3.4
2,926,056	-		MIT1002_02632	0.67	-0.3
2,926,098	-		MIT1002_02632	0.71	-2.5
2,926,102	-		MIT1002_02632	0.72	-1.5
2,926,131	+		MIT1002_02632	0.75	-2.2
2,926,155	+		MIT1002_02632	0.78	-3.3
2,926,165	+		MIT1002_02632	0.79	-3.8
2,926,187	+		MIT1002_02632	0.81	-0.6
2,926,191	-		MIT1002_02632	0.82	-2.1
2,926,296	+				-2.6
2,926,445	+				-2.5
2,926,499	+				-3.9
2,926,537	+		MIT1002_02633	0.13	-2.4
2,926,537	+		MIT1002_02633	0.13	-4.0
2,926,547	+		MIT1002_02633	0.14	-2.3
2,926,632	-		MIT1002_02633	0.20	-3.2
2,926,683	-		MIT1002_02633	0.24	-3.0
2,926,710	+		MIT1002_02633	0.26	-6.4
2,926,723	-		MIT1002_02633	0.27	-9.3
2,926,796	-		MIT1002_02633	0.33	-6.2
2,926,827	+		MIT1002_02633	0.35	-2.9
2,926,827	+		MIT1002_02633	0.35	-3.8
2,926,827	+		MIT1002_02633	0.35	-7.3
2,926,835	-		MIT1002_02633	0.36	-2.0
2,926,835	-		MIT1002_02633	0.36	-1.8
2,926,835	-		MIT1002_02633	0.36	-3.2
2,926,835	-		MIT1002_02633	0.36	-2.2
2,926,919	+		MIT1002_02633	0.42	-1.7
2,926,922	-		MIT1002_02633	0.42	-1.0
2,926,993	+		MIT1002_02633	0.48	-2.9
2,926,993	+		MIT1002_02633	0.48	-0.3
2,926,993	+		MIT1002_02633	0.48	-3.7
2,926,993	+		MIT1002_02633	0.48	-4.3
2,927,109	+		MIT1002_02633	0.57	-3.1
2,927,143	+		MIT1002_02633	0.59	-8.6
2,927,186	+		MIT1002_02633	0.63	-3.1
2,927,186	+		MIT1002_02633	0.63	-0.3
2,927,186	+		MIT1002_02633	0.63	-2.3
2,927,218	+		MIT1002_02633	0.65	-2.3
2,927,224	-		MIT1002_02633	0.66	-0.8
2,927,236	+		MIT1002_02633	0.66	-3.3
2,927,292	+		MIT1002_02633	0.71	-2.4
2,927,305	+		MIT1002_02633	0.72	-1.0
2,927,320	-		MIT1002_02633	0.73	-4.5
2,927,328	+		MIT1002_02633	0.73	-4.3
2,927,328	+		MIT1002_02633	0.73	-2.2
2,927,336	-		MIT1002_02633	0.74	-3.4
2,927,336	-		MIT1002_02633	0.74	-4.5
2,927,338	+		MIT1002_02633	0.74	-3.3
2,927,346	-		MIT1002_02633	0.75	-3.7
2,927,351	-		MIT1002_02633	0.75	-2.3
2,927,405	+		MIT1002_02633	0.79	-1.7
2,927,416	+		MIT1002_02633	0.80	-2.5
2,927,477	+		MIT1002_02633	0.85	-5.3
2,927,506	-		MIT1002_02633	0.87	-1.8
2,927,552	+				-2.9
2,927,616	-				-3.0
2,927,618	-				-2.7
2,927,638	-				-3.4
2,927,716	+				-0.8
2,927,724	-				-4.1
2,927,755	-				-3.8
2,927,757	+				-2.0
2,927,758	+				-1.5
2,927,765	-				-3.0
2,927,765	-				-1.7
2,927,798	+		MIT1002_02634	0.12	-2.0
2,927,808	+		MIT1002_02634	0.12	-1.9
2,927,814	-		MIT1002_02634	0.13	-5.3
2,927,841	+		MIT1002_02634	0.16	-3.7
2,927,917	+		MIT1002_02634	0.23	-5.6
2,927,917	+		MIT1002_02634	0.23	-4.4
2,927,922	+		MIT1002_02634	0.23	-2.1
2,927,930	-		MIT1002_02634	0.24	-3.7
2,928,025	+		MIT1002_02634	0.33	-2.5
2,928,025	+		MIT1002_02634	0.33	-4.6
2,928,064	+		MIT1002_02634	0.36	-2.7
2,928,072	-		MIT1002_02634	0.37	-4.7
2,928,167	+		MIT1002_02634	0.46	-5.1
2,928,167	+		MIT1002_02634	0.46	-2.7
2,928,167	+		MIT1002_02634	0.46	-1.3
2,928,175	-		MIT1002_02634	0.46	-1.3
2,928,175	-		MIT1002_02634	0.46	-0.8
2,928,201	+		MIT1002_02634	0.49	-4.0
2,928,282	-		MIT1002_02634	0.56	-4.7
2,928,283	+		MIT1002_02634	0.56	-2.3
2,928,285	+		MIT1002_02634	0.57	-3.1
2,928,298	-		MIT1002_02634	0.58	-2.5
2,928,302	+		MIT1002_02634	0.58	-2.9
2,928,302	+		MIT1002_02634	0.58	-4.1
2,928,310	-		MIT1002_02634	0.59	-1.0
2,928,310	-		MIT1002_02634	0.59	-0.6
2,928,373	+		MIT1002_02634	0.65	-2.5
2,928,398	-		MIT1002_02634	0.67	-5.5
2,928,398	-		MIT1002_02634	0.67	-7.8
2,928,422	-		MIT1002_02634	0.69	-2.9
2,928,449	-		MIT1002_02634	0.72	-3.4
2,928,463	+		MIT1002_02634	0.73	-6.3
2,928,577	+		MIT1002_02634	0.84	-0.6
2,928,591	+		MIT1002_02634	0.85	-4.5
2,928,592	+		MIT1002_02634	0.85	-2.8
2,928,613	+		MIT1002_02634	0.87	-4.5