Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02599

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4
2,898,664	-		MIT1002_02598	0.11	+0.2
2,898,691	-		MIT1002_02598	0.13	-0.4
2,898,691	-		MIT1002_02598	0.13	-0.9
2,898,691	-		MIT1002_02598	0.13	-2.5
2,898,718	-		MIT1002_02598	0.16	-0.3
2,898,728	-		MIT1002_02598	0.17	-0.4
2,898,790	+		MIT1002_02598	0.23	+1.4
2,898,790	+		MIT1002_02598	0.23	+0.8
2,898,831	-		MIT1002_02598	0.27	-1.9
2,898,843	-		MIT1002_02598	0.28	+2.2
2,898,853	-		MIT1002_02598	0.29	-0.7
2,898,853	-		MIT1002_02598	0.29	+0.8
2,898,855	+		MIT1002_02598	0.29	+1.6
2,898,855	+		MIT1002_02598	0.29	+0.2
2,898,855	+		MIT1002_02598	0.29	-0.2
2,898,855	+		MIT1002_02598	0.29	-1.0
2,898,855	+		MIT1002_02598	0.29	-1.0
2,898,855	+		MIT1002_02598	0.29	-0.0
2,898,855	+		MIT1002_02598	0.29	-1.6
2,898,855	+		MIT1002_02598	0.29	-0.4
2,898,855	+		MIT1002_02598	0.29	-0.4
2,898,855	+		MIT1002_02598	0.29	+0.5
2,898,863	-		MIT1002_02598	0.30	-0.0
2,898,863	-		MIT1002_02598	0.30	-0.2
2,898,863	-		MIT1002_02598	0.30	-0.1
2,898,863	-		MIT1002_02598	0.30	-0.2
2,898,863	-		MIT1002_02598	0.30	-0.1
2,898,863	-		MIT1002_02598	0.30	+1.5
2,898,863	-		MIT1002_02598	0.30	-1.4
2,898,863	-		MIT1002_02598	0.30	+0.2
2,898,863	-		MIT1002_02598	0.30	+0.6
2,898,863	-		MIT1002_02598	0.30	+0.7
2,898,863	-		MIT1002_02598	0.30	-0.4
2,898,863	-		MIT1002_02598	0.30	-0.0
2,898,863	-		MIT1002_02598	0.30	+0.1
2,898,863	-		MIT1002_02598	0.30	+0.2
2,898,863	-		MIT1002_02598	0.30	+0.2
2,898,863	-		MIT1002_02598	0.30	+0.6
2,898,863	-		MIT1002_02598	0.30	-0.4
2,898,863	-		MIT1002_02598	0.30	+1.7
2,898,927	-		MIT1002_02598	0.36	+0.4
2,898,950	+		MIT1002_02598	0.38	+0.1
2,898,950	+		MIT1002_02598	0.38	+0.2
2,898,958	-		MIT1002_02598	0.39	-0.3
2,898,960	+		MIT1002_02598	0.39	+1.4
2,898,960	+		MIT1002_02598	0.39	-0.7
2,898,960	+		MIT1002_02598	0.39	-0.1
2,898,965	+		MIT1002_02598	0.39	-0.0
2,898,965	+		MIT1002_02598	0.39	+0.2
2,898,989	+		MIT1002_02598	0.42	+0.1
2,899,055	+		MIT1002_02598	0.48	+1.0
2,899,085	-		MIT1002_02598	0.51	+0.1
2,899,086	+		MIT1002_02598	0.51	+0.7
2,899,086	+		MIT1002_02598	0.51	-0.2
2,899,094	-		MIT1002_02598	0.52	+0.7
2,899,100	+		MIT1002_02598	0.52	+0.7
2,899,100	+		MIT1002_02598	0.52	-0.8
2,899,100	+		MIT1002_02598	0.52	+1.1
2,899,108	-		MIT1002_02598	0.53	-2.7
2,899,202	+		MIT1002_02598	0.62	+0.5
2,899,208	-		MIT1002_02598	0.62	-1.2
2,899,208	-		MIT1002_02598	0.62	-1.4
2,899,212	+		MIT1002_02598	0.63	+1.2
2,899,220	-		MIT1002_02598	0.63	-1.9
2,899,224	+		MIT1002_02598	0.64	-0.1
2,899,261	-		MIT1002_02598	0.67	+0.0
2,899,277	-		MIT1002_02598	0.69	+0.2
2,899,369	+		MIT1002_02598	0.78	-0.2
2,899,370	+		MIT1002_02598	0.78	+1.2
2,899,435	-		MIT1002_02598	0.84	+0.3
2,899,435	-		MIT1002_02598	0.84	-2.2
2,899,544	+				+0.7
2,899,554	+				-0.4
2,899,668	+				+1.0
2,899,676	-				+1.2
2,899,728	-		MIT1002_02599	0.19	+1.0
2,899,735	+		MIT1002_02599	0.20	+0.1
2,899,754	+		MIT1002_02599	0.25	+1.4
2,899,762	-		MIT1002_02599	0.27	+0.8
2,899,830	+		MIT1002_02599	0.44	-0.0
2,899,830	+		MIT1002_02599	0.44	-0.3
2,899,919	+		MIT1002_02599	0.66	+0.3
2,899,961	+		MIT1002_02599	0.77	+0.8
2,899,998	+		MIT1002_02599	0.86	-0.2
2,900,120	-				+0.3
2,900,148	+				+1.0
2,900,297	+				-2.6
2,900,310	-				+0.0
2,900,341	+				-0.8
2,900,349	-				-0.3
2,900,349	-				-1.3
2,900,349	-				-0.4
2,900,388	+				+0.5
2,900,479	+		MIT1002_02600	0.15	-0.9
2,900,592	-		MIT1002_02600	0.32	+2.0
2,900,592	-		MIT1002_02600	0.32	-1.6
2,900,675	-		MIT1002_02600	0.44	-0.8
2,900,764	+		MIT1002_02600	0.56	+0.4
2,900,772	-		MIT1002_02600	0.57	-0.0
2,900,776	+		MIT1002_02600	0.58	+1.5
2,900,794	-		MIT1002_02600	0.61	+0.8
2,900,842	+		MIT1002_02600	0.68	+0.6
2,900,896	+		MIT1002_02600	0.75	-2.3
2,900,922	-		MIT1002_02600	0.79	-1.5
2,900,929	+		MIT1002_02600	0.80	-1.6
2,900,938	-		MIT1002_02600	0.81	-0.5
2,900,938	-		MIT1002_02600	0.81	+0.2
2,901,054	+				+1.3