Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02080

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4
2,339,280	+				-0.0
2,339,298	-				-0.1
2,339,346	-				+0.6
2,339,347	-				+1.1
2,339,433	-		MIT1002_02079	0.14	-0.3
2,339,455	+		MIT1002_02079	0.16	-2.0
2,339,455	+		MIT1002_02079	0.16	-0.8
2,339,463	-		MIT1002_02079	0.17	+1.1
2,339,463	-		MIT1002_02079	0.17	-0.6
2,339,463	-		MIT1002_02079	0.17	+0.9
2,339,463	-		MIT1002_02079	0.17	-0.4
2,339,463	-		MIT1002_02079	0.17	-1.9
2,339,463	-		MIT1002_02079	0.17	-0.1
2,339,574	+		MIT1002_02079	0.29	+0.5
2,339,633	-		MIT1002_02079	0.35	+1.3
2,339,782	-		MIT1002_02079	0.51	+0.2
2,339,789	+		MIT1002_02079	0.51	+1.4
2,339,857	+		MIT1002_02079	0.59	+0.3
2,339,936	+		MIT1002_02079	0.67	+0.6
2,339,947	+		MIT1002_02079	0.68	-0.4
2,339,949	-		MIT1002_02079	0.68	-0.1
2,340,016	-		MIT1002_02079	0.75	+0.0
2,340,039	+		MIT1002_02079	0.78	-0.1
2,340,045	+		MIT1002_02079	0.78	+0.3
2,340,045	+		MIT1002_02079	0.78	+1.1
2,340,217	+				+0.2
2,340,217	+				+1.1
2,340,217	+				+0.2
2,340,225	-				+1.1
2,340,225	-				+1.3
2,340,225	-				+0.2
2,340,227	+				-0.4
2,340,235	+				-0.4
2,340,244	-				-0.7
2,340,362	-		MIT1002_02080	0.14	+1.6
2,340,482	+		MIT1002_02080	0.29	-0.1
2,340,633	-		MIT1002_02080	0.47	+1.7
2,340,633	-		MIT1002_02080	0.47	-0.5
2,340,686	-		MIT1002_02080	0.54	+0.9
2,340,696	-		MIT1002_02080	0.55	+0.6
2,340,742	-		MIT1002_02080	0.60	-0.6
2,340,765	+		MIT1002_02080	0.63	-0.0
2,340,771	-		MIT1002_02080	0.64	-1.3
2,340,773	-		MIT1002_02080	0.64	-1.8
2,340,822	+		MIT1002_02080	0.70	-1.0
2,340,822	+		MIT1002_02080	0.70	+1.5
2,340,822	+		MIT1002_02080	0.70	-0.1
2,340,830	-		MIT1002_02080	0.71	+2.5
2,340,849	+		MIT1002_02080	0.73	-0.2
2,340,964	+		MIT1002_02080	0.87	-0.3
2,340,972	-		MIT1002_02080	0.88	+0.8
2,340,972	-		MIT1002_02080	0.88	-1.4
2,340,984	+		MIT1002_02080	0.90	+1.0
2,340,993	-				-1.4
2,341,174	+		MIT1002_02081	0.14	+1.6
2,341,202	+		MIT1002_02081	0.19	-1.4
2,341,339	+		MIT1002_02081	0.43	-0.0
2,341,473	-		MIT1002_02081	0.66	+1.8
2,341,522	+		MIT1002_02081	0.75	+1.6
2,341,522	+		MIT1002_02081	0.75	+0.1
2,341,522	+		MIT1002_02081	0.75	-0.7
2,341,530	-		MIT1002_02081	0.76	+1.9
2,341,538	+		MIT1002_02081	0.77	-0.1
2,341,540	-		MIT1002_02081	0.78	-0.2
2,341,545	-		MIT1002_02081	0.79	-0.1
2,341,546	-		MIT1002_02081	0.79	-0.8
2,341,781	+				-1.1
2,341,781	-				+0.4
2,341,791	+				+0.4
2,341,794	-				+0.3
2,341,809	-				-0.7
2,341,878	+		MIT1002_02082	0.11	-0.1
2,341,883	-		MIT1002_02082	0.11	-1.3
2,341,911	-		MIT1002_02082	0.13	-0.7
2,341,911	-		MIT1002_02082	0.13	+1.4
2,341,913	+		MIT1002_02082	0.13	-1.4
2,341,913	-		MIT1002_02082	0.13	+0.2
2,341,952	+		MIT1002_02082	0.16	+1.1
2,341,973	+		MIT1002_02082	0.18	-2.0
2,341,976	-		MIT1002_02082	0.18	+0.3
2,342,008	+		MIT1002_02082	0.20	+0.4
2,342,008	+		MIT1002_02082	0.20	+1.1
2,342,016	-		MIT1002_02082	0.21	+0.3
2,342,016	-		MIT1002_02082	0.21	-0.5