Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02036

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4
2,286,266	+		MIT1002_02035	0.52	-2.5
2,286,269	-		MIT1002_02035	0.53	-1.8
2,286,427	-		MIT1002_02035	0.68	-1.9
2,286,816	+				-0.7
2,286,845	-				-0.1
2,286,907	+				-0.6
2,286,930	+				-1.1
2,286,986	+				+1.0
2,286,986	+				+0.8
2,287,003	+				+0.4
2,287,028	+		MIT1002_02036	0.10	+1.0
2,287,030	+		MIT1002_02036	0.10	-1.4
2,287,030	+		MIT1002_02036	0.10	+1.0
2,287,030	+		MIT1002_02036	0.10	-1.2
2,287,030	+		MIT1002_02036	0.10	+0.9
2,287,036	-		MIT1002_02036	0.11	+1.0
2,287,038	-		MIT1002_02036	0.11	+0.6
2,287,038	-		MIT1002_02036	0.11	+0.2
2,287,038	-		MIT1002_02036	0.11	-0.3
2,287,038	-		MIT1002_02036	0.11	-0.8
2,287,046	+		MIT1002_02036	0.11	+0.5
2,287,061	+		MIT1002_02036	0.12	-0.3
2,287,094	-		MIT1002_02036	0.13	-0.4
2,287,197	+		MIT1002_02036	0.18	-1.3
2,287,233	+		MIT1002_02036	0.20	-0.9
2,287,281	+		MIT1002_02036	0.22	+0.7
2,287,287	+		MIT1002_02036	0.23	+0.2
2,287,294	-		MIT1002_02036	0.23	-0.1
2,287,363	-		MIT1002_02036	0.26	-0.9
2,287,389	-		MIT1002_02036	0.28	-0.4
2,287,450	-		MIT1002_02036	0.30	+0.7
2,287,458	+		MIT1002_02036	0.31	-0.8
2,287,469	+		MIT1002_02036	0.31	+0.8
2,287,497	-		MIT1002_02036	0.33	+2.2
2,287,530	-		MIT1002_02036	0.34	+0.6
2,287,597	-		MIT1002_02036	0.37	+1.6
2,287,651	-		MIT1002_02036	0.40	-1.6
2,287,720	-		MIT1002_02036	0.43	-0.8
2,287,753	-		MIT1002_02036	0.45	+2.0
2,287,789	+		MIT1002_02036	0.47	+0.3
2,287,808	+		MIT1002_02036	0.47	-0.6
2,287,808	+		MIT1002_02036	0.47	-0.7
2,287,826	-		MIT1002_02036	0.48	-0.4
2,287,888	-		MIT1002_02036	0.51	-0.5
2,287,888	-		MIT1002_02036	0.51	+0.9
2,287,888	-		MIT1002_02036	0.51	-1.3
2,287,888	-		MIT1002_02036	0.51	-0.3
2,287,897	+		MIT1002_02036	0.52	-2.0
2,287,953	+		MIT1002_02036	0.54	+0.1
2,287,955	+		MIT1002_02036	0.55	+0.5
2,288,041	+		MIT1002_02036	0.59	+1.1
2,288,055	-		MIT1002_02036	0.59	-0.1
2,288,070	+		MIT1002_02036	0.60	-0.2
2,288,096	+		MIT1002_02036	0.61	-0.1
2,288,104	-		MIT1002_02036	0.62	-0.4
2,288,238	+		MIT1002_02036	0.68	-0.6
2,288,246	+		MIT1002_02036	0.68	-0.2
2,288,246	-		MIT1002_02036	0.68	+0.2
2,288,343	+		MIT1002_02036	0.73	-3.3
2,288,345	-		MIT1002_02036	0.73	-0.2
2,288,346	-		MIT1002_02036	0.73	-0.4
2,288,383	+		MIT1002_02036	0.75	-0.4
2,288,402	+		MIT1002_02036	0.76	+1.6
2,288,421	-		MIT1002_02036	0.77	-2.4
2,288,428	-		MIT1002_02036	0.77	-1.7
2,288,472	+		MIT1002_02036	0.79	-1.7
2,288,512	+		MIT1002_02036	0.81	+0.4
2,288,512	+		MIT1002_02036	0.81	+0.3
2,288,604	+		MIT1002_02036	0.85	+0.6
2,288,621	+		MIT1002_02036	0.86	-0.3
2,288,690	+		MIT1002_02036	0.90	+0.3
2,288,696	-		MIT1002_02036	0.90	-0.6
2,288,791	+				-1.8
2,288,887	-				-0.1
2,288,895	-				-1.1
2,288,960	-		MIT1002_02037	0.24	-2.0
2,289,026	-		MIT1002_02037	0.52	+1.6
2,289,026	-		MIT1002_02037	0.52	-0.7
2,289,047	+		MIT1002_02037	0.61	+0.3
2,289,047	+		MIT1002_02037	0.61	+0.4
2,289,047	+		MIT1002_02037	0.61	-1.0
2,289,055	-		MIT1002_02037	0.64	-1.1
2,289,194	-				-0.3
2,289,196	+				+0.5
2,289,205	+				+1.5
2,289,232	+				-0.7
2,289,232	+				+0.3
2,289,232	+				+1.1
2,289,240	-				-1.1
2,289,240	-				+0.5
2,289,240	-				-0.1
2,289,356	-		MIT1002_02038	0.11	-0.4
2,289,356	-		MIT1002_02038	0.11	+0.5
2,289,389	-		MIT1002_02038	0.13	-0.1
2,289,404	-		MIT1002_02038	0.14	+0.3
2,289,410	-		MIT1002_02038	0.14	-0.4
2,289,433	-		MIT1002_02038	0.15	-0.6
2,289,441	+		MIT1002_02038	0.16	+1.1
2,289,526	-		MIT1002_02038	0.20	+0.7
2,289,577	-		MIT1002_02038	0.23	+1.1
2,289,669	+		MIT1002_02038	0.28	-0.7
2,289,770	-		MIT1002_02038	0.33	-1.0
2,289,807	+		MIT1002_02038	0.35	+0.8
2,289,807	+		MIT1002_02038	0.35	-1.1
2,289,833	-		MIT1002_02038	0.36	+1.1
2,289,901	+		MIT1002_02038	0.39	+0.7