Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00815 and MIT1002_00816 overlap by 4 nucleotides MIT1002_00816 and MIT1002_00817 are separated by 168 nucleotides MIT1002_00817 and MIT1002_00818 overlap by 4 nucleotides
MIT1002_00815: MIT1002_00815 - Cytochrome b/c1, at 900,099 to 901,364
_00815
MIT1002_00816: MIT1002_00816 - Cytochrome c1 precursor, at 901,361 to 902,095
_00816
MIT1002_00817: MIT1002_00817 - Stringent starvation protein A, at 902,264 to 902,896
_00817
MIT1002_00818: MIT1002_00818 - Stringent starvation protein B, at 902,893 to 903,366
_00818
Position (kb) 901
902
903 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 900.523 kb on - strand, within MIT1002_00815 at 900.932 kb on - strand, within MIT1002_00815 at 901.121 kb on + strand, within MIT1002_00815 at 901.121 kb on + strand, within MIT1002_00815 at 901.121 kb on + strand, within MIT1002_00815 at 901.121 kb on + strand, within MIT1002_00815 at 901.129 kb on - strand, within MIT1002_00815 at 901.129 kb on - strand, within MIT1002_00815 at 901.131 kb on + strand, within MIT1002_00815 at 901.175 kb on - strand, within MIT1002_00815 at 901.490 kb on - strand, within MIT1002_00816 at 901.490 kb on - strand, within MIT1002_00816 at 901.490 kb on - strand, within MIT1002_00816 at 901.501 kb on + strand, within MIT1002_00816 at 901.556 kb on + strand, within MIT1002_00816 at 901.597 kb on - strand, within MIT1002_00816 at 901.668 kb on + strand, within MIT1002_00816 at 901.764 kb on + strand, within MIT1002_00816 at 901.782 kb on - strand, within MIT1002_00816 at 901.853 kb on - strand, within MIT1002_00816 at 902.044 kb on - strand at 902.968 kb on - strand, within MIT1002_00818
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4 remove 900,523 - MIT1002_00815 0.33 -1.1 900,932 - MIT1002_00815 0.66 -2.2 901,121 + MIT1002_00815 0.81 -2.0 901,121 + MIT1002_00815 0.81 +0.1 901,121 + MIT1002_00815 0.81 -1.4 901,121 + MIT1002_00815 0.81 -1.1 901,129 - MIT1002_00815 0.81 -0.9 901,129 - MIT1002_00815 0.81 -1.7 901,131 + MIT1002_00815 0.82 -2.4 901,175 - MIT1002_00815 0.85 -1.2 901,490 - MIT1002_00816 0.18 -1.6 901,490 - MIT1002_00816 0.18 -1.4 901,490 - MIT1002_00816 0.18 -1.9 901,501 + MIT1002_00816 0.19 -0.7 901,556 + MIT1002_00816 0.27 -0.9 901,597 - MIT1002_00816 0.32 -0.9 901,668 + MIT1002_00816 0.42 -2.1 901,764 + MIT1002_00816 0.55 -2.1 901,782 - MIT1002_00816 0.57 -1.1 901,853 - MIT1002_00816 0.67 -0.7 902,044 - -2.9 902,968 - MIT1002_00818 0.16 -1.5
Or see this region's nucleotide sequence