Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00803

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00801 and MIT1002_00802 overlap by 11 nucleotidesMIT1002_00802 and MIT1002_00803 are separated by 116 nucleotidesMIT1002_00803 and MIT1002_00804 overlap by 4 nucleotidesMIT1002_00804 and MIT1002_00805 overlap by 11 nucleotides MIT1002_00801: MIT1002_00801 - Long-chain-fatty-acid--CoA ligase FadD15, at 887,529 to 889,037 _00801 MIT1002_00802: MIT1002_00802 - Thermostable hemolysin, at 889,027 to 889,770 _00802 MIT1002_00803: MIT1002_00803 - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase, at 889,887 to 891,698 _00803 MIT1002_00804: MIT1002_00804 - SNARE associated Golgi protein, at 891,695 to 892,372 _00804 MIT1002_00805: MIT1002_00805 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 892,362 to 893,099 _00805 Position (kb) 889 890 891 892Strain fitness (log2 ratio) -2 -1 0 1 2 3at 888.950 kb on - strandat 889.015 kb on + strandat 889.101 kb on - strandat 889.128 kb on + strand, within MIT1002_00802at 889.136 kb on - strand, within MIT1002_00802at 889.136 kb on - strand, within MIT1002_00802at 889.136 kb on - strand, within MIT1002_00802at 889.138 kb on + strand, within MIT1002_00802at 889.147 kb on + strand, within MIT1002_00802at 889.147 kb on + strand, within MIT1002_00802at 889.147 kb on + strand, within MIT1002_00802at 889.175 kb on + strand, within MIT1002_00802at 889.180 kb on + strand, within MIT1002_00802at 889.180 kb on + strand, within MIT1002_00802at 889.181 kb on - strand, within MIT1002_00802at 889.183 kb on - strand, within MIT1002_00802at 889.183 kb on - strand, within MIT1002_00802at 889.190 kb on - strand, within MIT1002_00802at 889.195 kb on + strand, within MIT1002_00802at 889.247 kb on + strand, within MIT1002_00802at 889.254 kb on - strand, within MIT1002_00802at 889.258 kb on + strand, within MIT1002_00802at 889.372 kb on + strand, within MIT1002_00802at 889.379 kb on + strand, within MIT1002_00802at 889.379 kb on + strand, within MIT1002_00802at 889.382 kb on - strand, within MIT1002_00802at 889.396 kb on + strand, within MIT1002_00802at 889.432 kb on + strand, within MIT1002_00802at 889.453 kb on + strand, within MIT1002_00802at 889.454 kb on - strand, within MIT1002_00802at 889.475 kb on + strand, within MIT1002_00802at 889.483 kb on - strand, within MIT1002_00802at 889.502 kb on + strand, within MIT1002_00802at 889.564 kb on + strand, within MIT1002_00802at 889.584 kb on - strand, within MIT1002_00802at 889.617 kb on + strand, within MIT1002_00802at 889.696 kb on - strandat 889.741 kb on + strandat 889.809 kb on + strandat 889.824 kb on - strandat 889.901 kb on + strandat 889.942 kb on + strandat 889.991 kb on + strandat 889.991 kb on + strandat 889.991 kb on + strandat 889.999 kb on - strandat 889.999 kb on - strandat 889.999 kb on - strandat 889.999 kb on - strandat 890.054 kb on - strandat 890.080 kb on + strand, within MIT1002_00803at 890.253 kb on + strand, within MIT1002_00803at 890.315 kb on + strand, within MIT1002_00803at 890.320 kb on - strand, within MIT1002_00803at 890.326 kb on + strand, within MIT1002_00803at 890.345 kb on + strand, within MIT1002_00803at 890.345 kb on + strand, within MIT1002_00803at 890.493 kb on + strand, within MIT1002_00803at 890.501 kb on - strand, within MIT1002_00803at 890.613 kb on + strand, within MIT1002_00803at 890.629 kb on - strand, within MIT1002_00803at 890.659 kb on - strand, within MIT1002_00803at 890.684 kb on - strand, within MIT1002_00803at 890.689 kb on + strand, within MIT1002_00803at 890.697 kb on - strand, within MIT1002_00803at 890.697 kb on - strand, within MIT1002_00803at 890.726 kb on - strand, within MIT1002_00803at 890.730 kb on + strand, within MIT1002_00803at 890.738 kb on - strand, within MIT1002_00803at 890.738 kb on - strand, within MIT1002_00803at 890.776 kb on - strand, within MIT1002_00803at 890.819 kb on - strand, within MIT1002_00803at 890.906 kb on + strand, within MIT1002_00803at 890.906 kb on + strand, within MIT1002_00803at 890.907 kb on - strand, within MIT1002_00803at 890.919 kb on - strand, within MIT1002_00803at 890.992 kb on + strand, within MIT1002_00803at 891.066 kb on - strand, within MIT1002_00803at 891.180 kb on - strand, within MIT1002_00803at 891.181 kb on + strand, within MIT1002_00803at 891.204 kb on + strand, within MIT1002_00803at 891.316 kb on - strand, within MIT1002_00803at 891.323 kb on - strand, within MIT1002_00803at 891.335 kb on - strand, within MIT1002_00803at 891.382 kb on - strand, within MIT1002_00803at 891.406 kb on + strand, within MIT1002_00803at 891.424 kb on + strand, within MIT1002_00803at 891.424 kb on + strand, within MIT1002_00803at 891.446 kb on + strand, within MIT1002_00803at 891.454 kb on - strand, within MIT1002_00803at 891.489 kb on + strand, within MIT1002_00803at 891.493 kb on + strand, within MIT1002_00803at 891.548 kb on + strandat 891.548 kb on + strandat 891.617 kb on + strandat 891.641 kb on - strandat 891.659 kb on + strandat 891.659 kb on + strandat 891.659 kb on + strandat 891.659 kb on + strandat 891.659 kb on + strandat 891.665 kb on + strandat 891.667 kb on - strandat 891.667 kb on - strandat 891.686 kb on + strandat 891.692 kb on + strandat 891.702 kb on + strandat 891.740 kb on - strandat 891.756 kb on - strandat 891.781 kb on + strand, within MIT1002_00804at 891.781 kb on + strand, within MIT1002_00804at 891.887 kb on + strand, within MIT1002_00804at 891.928 kb on - strand, within MIT1002_00804at 892.021 kb on + strand, within MIT1002_00804at 892.029 kb on - strand, within MIT1002_00804at 892.066 kb on - strand, within MIT1002_00804at 892.094 kb on + strand, within MIT1002_00804at 892.162 kb on - strand, within MIT1002_00804at 892.200 kb on - strand, within MIT1002_00804at 892.200 kb on - strand, within MIT1002_00804at 892.200 kb on - strand, within MIT1002_00804at 892.200 kb on - strand, within MIT1002_00804at 892.291 kb on + strand, within MIT1002_00804at 892.291 kb on + strand, within MIT1002_00804at 892.299 kb on - strand, within MIT1002_00804at 892.299 kb on - strand, within MIT1002_00804at 892.469 kb on - strand, within MIT1002_00805at 892.469 kb on - strand, within MIT1002_00805at 892.532 kb on + strand, within MIT1002_00805at 892.539 kb on - strand, within MIT1002_00805at 892.539 kb on - strand, within MIT1002_00805at 892.539 kb on - strand, within MIT1002_00805at 892.634 kb on + strand, within MIT1002_00805at 892.634 kb on + strand, within MIT1002_00805at 892.655 kb on - strand, within MIT1002_00805

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4
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888,950 - +1.6
889,015 + +0.2
889,101 - -0.4
889,128 + MIT1002_00802 0.14 +0.3
889,136 - MIT1002_00802 0.15 +0.7
889,136 - MIT1002_00802 0.15 +0.9
889,136 - MIT1002_00802 0.15 +0.7
889,138 + MIT1002_00802 0.15 +0.7
889,147 + MIT1002_00802 0.16 +2.1
889,147 + MIT1002_00802 0.16 -0.9
889,147 + MIT1002_00802 0.16 +0.2
889,175 + MIT1002_00802 0.20 +0.8
889,180 + MIT1002_00802 0.21 -0.9
889,180 + MIT1002_00802 0.21 -0.4
889,181 - MIT1002_00802 0.21 +1.5
889,183 - MIT1002_00802 0.21 +0.5
889,183 - MIT1002_00802 0.21 -0.1
889,190 - MIT1002_00802 0.22 +1.8
889,195 + MIT1002_00802 0.23 +0.3
889,247 + MIT1002_00802 0.30 -1.0
889,254 - MIT1002_00802 0.31 -0.2
889,258 + MIT1002_00802 0.31 +0.5
889,372 + MIT1002_00802 0.46 +1.6
889,379 + MIT1002_00802 0.47 +1.1
889,379 + MIT1002_00802 0.47 +0.2
889,382 - MIT1002_00802 0.48 +0.5
889,396 + MIT1002_00802 0.50 +0.3
889,432 + MIT1002_00802 0.54 +0.9
889,453 + MIT1002_00802 0.57 +0.4
889,454 - MIT1002_00802 0.57 +0.6
889,475 + MIT1002_00802 0.60 -0.3
889,483 - MIT1002_00802 0.61 +0.4
889,502 + MIT1002_00802 0.64 -2.6
889,564 + MIT1002_00802 0.72 +0.2
889,584 - MIT1002_00802 0.75 +1.0
889,617 + MIT1002_00802 0.79 +0.2
889,696 - -2.2
889,741 + +1.3
889,809 + +2.1
889,824 - +0.1
889,901 + -0.1
889,942 + +1.0
889,991 + -1.1
889,991 + -0.0
889,991 + -2.0
889,999 - +0.1
889,999 - -0.5
889,999 - +0.1
889,999 - -0.3
890,054 - -0.0
890,080 + MIT1002_00803 0.11 -1.1
890,253 + MIT1002_00803 0.20 -0.3
890,315 + MIT1002_00803 0.24 +0.9
890,320 - MIT1002_00803 0.24 -0.0
890,326 + MIT1002_00803 0.24 +0.7
890,345 + MIT1002_00803 0.25 +0.7
890,345 + MIT1002_00803 0.25 +0.4
890,493 + MIT1002_00803 0.33 -0.2
890,501 - MIT1002_00803 0.34 -0.0
890,613 + MIT1002_00803 0.40 +0.1
890,629 - MIT1002_00803 0.41 -1.6
890,659 - MIT1002_00803 0.43 +1.1
890,684 - MIT1002_00803 0.44 +0.0
890,689 + MIT1002_00803 0.44 +3.1
890,697 - MIT1002_00803 0.45 +0.1
890,697 - MIT1002_00803 0.45 -1.2
890,726 - MIT1002_00803 0.46 -0.0
890,730 + MIT1002_00803 0.47 -0.1
890,738 - MIT1002_00803 0.47 +1.3
890,738 - MIT1002_00803 0.47 +1.4
890,776 - MIT1002_00803 0.49 +0.8
890,819 - MIT1002_00803 0.51 +0.4
890,906 + MIT1002_00803 0.56 +0.2
890,906 + MIT1002_00803 0.56 +1.8
890,907 - MIT1002_00803 0.56 +0.5
890,919 - MIT1002_00803 0.57 +0.8
890,992 + MIT1002_00803 0.61 +0.8
891,066 - MIT1002_00803 0.65 -0.3
891,180 - MIT1002_00803 0.71 -0.6
891,181 + MIT1002_00803 0.71 -2.1
891,204 + MIT1002_00803 0.73 +0.1
891,316 - MIT1002_00803 0.79 -1.1
891,323 - MIT1002_00803 0.79 +0.3
891,335 - MIT1002_00803 0.80 +0.6
891,382 - MIT1002_00803 0.83 -0.3
891,406 + MIT1002_00803 0.84 -0.6
891,424 + MIT1002_00803 0.85 +0.7
891,424 + MIT1002_00803 0.85 -0.4
891,446 + MIT1002_00803 0.86 +0.0
891,454 - MIT1002_00803 0.86 +0.3
891,489 + MIT1002_00803 0.88 -0.1
891,493 + MIT1002_00803 0.89 -0.2
891,548 + +1.9
891,548 + -0.9
891,617 + -0.1
891,641 - +0.5
891,659 + +0.6
891,659 + -0.3
891,659 + -0.4
891,659 + -0.4
891,659 + -1.2
891,665 + -0.5
891,667 - -0.3
891,667 - +0.5
891,686 + -0.7
891,692 + -0.2
891,702 + -0.7
891,740 - +1.1
891,756 - +0.1
891,781 + MIT1002_00804 0.13 +0.1
891,781 + MIT1002_00804 0.13 +0.0
891,887 + MIT1002_00804 0.28 +0.1
891,928 - MIT1002_00804 0.34 +0.4
892,021 + MIT1002_00804 0.48 -1.1
892,029 - MIT1002_00804 0.49 +1.1
892,066 - MIT1002_00804 0.55 +1.8
892,094 + MIT1002_00804 0.59 +0.0
892,162 - MIT1002_00804 0.69 -0.9
892,200 - MIT1002_00804 0.74 -2.1
892,200 - MIT1002_00804 0.74 +0.6
892,200 - MIT1002_00804 0.74 -0.2
892,200 - MIT1002_00804 0.74 -1.1
892,291 + MIT1002_00804 0.88 -1.9
892,291 + MIT1002_00804 0.88 -2.1
892,299 - MIT1002_00804 0.89 +0.5
892,299 - MIT1002_00804 0.89 +0.2
892,469 - MIT1002_00805 0.14 -0.3
892,469 - MIT1002_00805 0.14 -0.1
892,532 + MIT1002_00805 0.23 +0.1
892,539 - MIT1002_00805 0.24 +0.5
892,539 - MIT1002_00805 0.24 +0.9
892,539 - MIT1002_00805 0.24 -0.4
892,634 + MIT1002_00805 0.37 -1.1
892,634 + MIT1002_00805 0.37 +0.2
892,655 - MIT1002_00805 0.40 +0.6

Or see this region's nucleotide sequence