Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00802

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00801 and MIT1002_00802 overlap by 11 nucleotidesMIT1002_00802 and MIT1002_00803 are separated by 116 nucleotides MIT1002_00801: MIT1002_00801 - Long-chain-fatty-acid--CoA ligase FadD15, at 887,529 to 889,037 _00801 MIT1002_00802: MIT1002_00802 - Thermostable hemolysin, at 889,027 to 889,770 _00802 MIT1002_00803: MIT1002_00803 - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase, at 889,887 to 891,698 _00803 Position (kb) 889 890Strain fitness (log2 ratio) -2 -1 0 1 2 3at 888.141 kb on + strand, within MIT1002_00801at 888.163 kb on + strand, within MIT1002_00801at 888.174 kb on + strand, within MIT1002_00801at 888.174 kb on + strand, within MIT1002_00801at 888.182 kb on - strand, within MIT1002_00801at 888.191 kb on - strand, within MIT1002_00801at 888.261 kb on - strand, within MIT1002_00801at 888.266 kb on - strand, within MIT1002_00801at 888.275 kb on + strand, within MIT1002_00801at 888.447 kb on + strand, within MIT1002_00801at 888.450 kb on + strand, within MIT1002_00801at 888.450 kb on + strand, within MIT1002_00801at 888.450 kb on + strand, within MIT1002_00801at 888.450 kb on + strand, within MIT1002_00801at 888.455 kb on - strand, within MIT1002_00801at 888.458 kb on - strand, within MIT1002_00801at 888.458 kb on - strand, within MIT1002_00801at 888.458 kb on - strand, within MIT1002_00801at 888.458 kb on - strand, within MIT1002_00801at 888.458 kb on - strand, within MIT1002_00801at 888.467 kb on - strand, within MIT1002_00801at 888.487 kb on + strand, within MIT1002_00801at 888.500 kb on + strand, within MIT1002_00801at 888.536 kb on - strand, within MIT1002_00801at 888.545 kb on + strand, within MIT1002_00801at 888.592 kb on - strand, within MIT1002_00801at 888.593 kb on - strand, within MIT1002_00801at 888.639 kb on + strand, within MIT1002_00801at 888.641 kb on + strand, within MIT1002_00801at 888.646 kb on + strand, within MIT1002_00801at 888.649 kb on - strand, within MIT1002_00801at 888.653 kb on + strand, within MIT1002_00801at 888.656 kb on + strand, within MIT1002_00801at 888.661 kb on - strand, within MIT1002_00801at 888.734 kb on - strand, within MIT1002_00801at 888.737 kb on + strand, within MIT1002_00801at 888.832 kb on + strand, within MIT1002_00801at 888.950 kb on - strandat 889.015 kb on + strandat 889.101 kb on - strandat 889.128 kb on + strand, within MIT1002_00802at 889.136 kb on - strand, within MIT1002_00802at 889.136 kb on - strand, within MIT1002_00802at 889.136 kb on - strand, within MIT1002_00802at 889.138 kb on + strand, within MIT1002_00802at 889.147 kb on + strand, within MIT1002_00802at 889.147 kb on + strand, within MIT1002_00802at 889.147 kb on + strand, within MIT1002_00802at 889.175 kb on + strand, within MIT1002_00802at 889.180 kb on + strand, within MIT1002_00802at 889.180 kb on + strand, within MIT1002_00802at 889.181 kb on - strand, within MIT1002_00802at 889.183 kb on - strand, within MIT1002_00802at 889.183 kb on - strand, within MIT1002_00802at 889.190 kb on - strand, within MIT1002_00802at 889.195 kb on + strand, within MIT1002_00802at 889.247 kb on + strand, within MIT1002_00802at 889.254 kb on - strand, within MIT1002_00802at 889.258 kb on + strand, within MIT1002_00802at 889.372 kb on + strand, within MIT1002_00802at 889.379 kb on + strand, within MIT1002_00802at 889.379 kb on + strand, within MIT1002_00802at 889.382 kb on - strand, within MIT1002_00802at 889.396 kb on + strand, within MIT1002_00802at 889.432 kb on + strand, within MIT1002_00802at 889.453 kb on + strand, within MIT1002_00802at 889.454 kb on - strand, within MIT1002_00802at 889.475 kb on + strand, within MIT1002_00802at 889.483 kb on - strand, within MIT1002_00802at 889.502 kb on + strand, within MIT1002_00802at 889.564 kb on + strand, within MIT1002_00802at 889.584 kb on - strand, within MIT1002_00802at 889.617 kb on + strand, within MIT1002_00802at 889.696 kb on - strandat 889.741 kb on + strandat 889.809 kb on + strandat 889.824 kb on - strandat 889.901 kb on + strandat 889.942 kb on + strandat 889.991 kb on + strandat 889.991 kb on + strandat 889.991 kb on + strandat 889.999 kb on - strandat 889.999 kb on - strandat 889.999 kb on - strandat 889.999 kb on - strandat 890.054 kb on - strandat 890.080 kb on + strand, within MIT1002_00803at 890.253 kb on + strand, within MIT1002_00803at 890.315 kb on + strand, within MIT1002_00803at 890.320 kb on - strand, within MIT1002_00803at 890.326 kb on + strand, within MIT1002_00803at 890.345 kb on + strand, within MIT1002_00803at 890.345 kb on + strand, within MIT1002_00803at 890.493 kb on + strand, within MIT1002_00803at 890.501 kb on - strand, within MIT1002_00803at 890.613 kb on + strand, within MIT1002_00803at 890.629 kb on - strand, within MIT1002_00803at 890.659 kb on - strand, within MIT1002_00803at 890.684 kb on - strand, within MIT1002_00803at 890.689 kb on + strand, within MIT1002_00803at 890.697 kb on - strand, within MIT1002_00803at 890.697 kb on - strand, within MIT1002_00803at 890.726 kb on - strand, within MIT1002_00803at 890.730 kb on + strand, within MIT1002_00803at 890.738 kb on - strand, within MIT1002_00803at 890.738 kb on - strand, within MIT1002_00803

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4
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888,141 + MIT1002_00801 0.41 +0.2
888,163 + MIT1002_00801 0.42 -0.2
888,174 + MIT1002_00801 0.43 +0.1
888,174 + MIT1002_00801 0.43 -0.5
888,182 - MIT1002_00801 0.43 +0.4
888,191 - MIT1002_00801 0.44 +0.6
888,261 - MIT1002_00801 0.49 +0.9
888,266 - MIT1002_00801 0.49 +1.7
888,275 + MIT1002_00801 0.49 -0.3
888,447 + MIT1002_00801 0.61 -0.9
888,450 + MIT1002_00801 0.61 +1.0
888,450 + MIT1002_00801 0.61 +0.2
888,450 + MIT1002_00801 0.61 -2.3
888,450 + MIT1002_00801 0.61 +0.1
888,455 - MIT1002_00801 0.61 -2.7
888,458 - MIT1002_00801 0.62 -1.9
888,458 - MIT1002_00801 0.62 -0.3
888,458 - MIT1002_00801 0.62 +1.0
888,458 - MIT1002_00801 0.62 +0.9
888,458 - MIT1002_00801 0.62 +1.0
888,467 - MIT1002_00801 0.62 -0.2
888,487 + MIT1002_00801 0.63 +0.5
888,500 + MIT1002_00801 0.64 -0.6
888,536 - MIT1002_00801 0.67 -0.2
888,545 + MIT1002_00801 0.67 +1.9
888,592 - MIT1002_00801 0.70 -1.1
888,593 - MIT1002_00801 0.71 +0.8
888,639 + MIT1002_00801 0.74 -2.6
888,641 + MIT1002_00801 0.74 -0.5
888,646 + MIT1002_00801 0.74 +0.2
888,649 - MIT1002_00801 0.74 +1.2
888,653 + MIT1002_00801 0.74 -0.6
888,656 + MIT1002_00801 0.75 +1.2
888,661 - MIT1002_00801 0.75 -1.1
888,734 - MIT1002_00801 0.80 +0.3
888,737 + MIT1002_00801 0.80 -0.1
888,832 + MIT1002_00801 0.86 -1.0
888,950 - +1.6
889,015 + +0.2
889,101 - -0.4
889,128 + MIT1002_00802 0.14 +0.3
889,136 - MIT1002_00802 0.15 +0.7
889,136 - MIT1002_00802 0.15 +0.9
889,136 - MIT1002_00802 0.15 +0.7
889,138 + MIT1002_00802 0.15 +0.7
889,147 + MIT1002_00802 0.16 +2.1
889,147 + MIT1002_00802 0.16 -0.9
889,147 + MIT1002_00802 0.16 +0.2
889,175 + MIT1002_00802 0.20 +0.8
889,180 + MIT1002_00802 0.21 -0.9
889,180 + MIT1002_00802 0.21 -0.4
889,181 - MIT1002_00802 0.21 +1.5
889,183 - MIT1002_00802 0.21 +0.5
889,183 - MIT1002_00802 0.21 -0.1
889,190 - MIT1002_00802 0.22 +1.8
889,195 + MIT1002_00802 0.23 +0.3
889,247 + MIT1002_00802 0.30 -1.0
889,254 - MIT1002_00802 0.31 -0.2
889,258 + MIT1002_00802 0.31 +0.5
889,372 + MIT1002_00802 0.46 +1.6
889,379 + MIT1002_00802 0.47 +1.1
889,379 + MIT1002_00802 0.47 +0.2
889,382 - MIT1002_00802 0.48 +0.5
889,396 + MIT1002_00802 0.50 +0.3
889,432 + MIT1002_00802 0.54 +0.9
889,453 + MIT1002_00802 0.57 +0.4
889,454 - MIT1002_00802 0.57 +0.6
889,475 + MIT1002_00802 0.60 -0.3
889,483 - MIT1002_00802 0.61 +0.4
889,502 + MIT1002_00802 0.64 -2.6
889,564 + MIT1002_00802 0.72 +0.2
889,584 - MIT1002_00802 0.75 +1.0
889,617 + MIT1002_00802 0.79 +0.2
889,696 - -2.2
889,741 + +1.3
889,809 + +2.1
889,824 - +0.1
889,901 + -0.1
889,942 + +1.0
889,991 + -1.1
889,991 + -0.0
889,991 + -2.0
889,999 - +0.1
889,999 - -0.5
889,999 - +0.1
889,999 - -0.3
890,054 - -0.0
890,080 + MIT1002_00803 0.11 -1.1
890,253 + MIT1002_00803 0.20 -0.3
890,315 + MIT1002_00803 0.24 +0.9
890,320 - MIT1002_00803 0.24 -0.0
890,326 + MIT1002_00803 0.24 +0.7
890,345 + MIT1002_00803 0.25 +0.7
890,345 + MIT1002_00803 0.25 +0.4
890,493 + MIT1002_00803 0.33 -0.2
890,501 - MIT1002_00803 0.34 -0.0
890,613 + MIT1002_00803 0.40 +0.1
890,629 - MIT1002_00803 0.41 -1.6
890,659 - MIT1002_00803 0.43 +1.1
890,684 - MIT1002_00803 0.44 +0.0
890,689 + MIT1002_00803 0.44 +3.1
890,697 - MIT1002_00803 0.45 +0.1
890,697 - MIT1002_00803 0.45 -1.2
890,726 - MIT1002_00803 0.46 -0.0
890,730 + MIT1002_00803 0.47 -0.1
890,738 - MIT1002_00803 0.47 +1.3
890,738 - MIT1002_00803 0.47 +1.4

Or see this region's nucleotide sequence