Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00794

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00793 and MIT1002_00794 are separated by 12 nucleotidesMIT1002_00794 and MIT1002_00795 overlap by 23 nucleotides MIT1002_00793: MIT1002_00793 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 877,680 to 879,122 _00793 MIT1002_00794: MIT1002_00794 - GTP pyrophosphokinase, at 879,135 to 881,318 _00794 MIT1002_00795: MIT1002_00795 - Nucleoside triphosphate pyrophosphohydrolase, at 881,296 to 882,252 _00795 Position (kb) 879 880 881 882Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 878.151 kb on + strand, within MIT1002_00793at 878.155 kb on + strand, within MIT1002_00793at 878.195 kb on + strand, within MIT1002_00793at 878.203 kb on - strand, within MIT1002_00793at 878.203 kb on - strand, within MIT1002_00793at 878.212 kb on + strand, within MIT1002_00793at 878.268 kb on + strand, within MIT1002_00793at 878.278 kb on + strand, within MIT1002_00793at 878.278 kb on + strand, within MIT1002_00793at 878.286 kb on - strand, within MIT1002_00793at 878.286 kb on - strand, within MIT1002_00793at 878.317 kb on + strand, within MIT1002_00793at 878.337 kb on + strand, within MIT1002_00793at 878.337 kb on - strand, within MIT1002_00793at 878.339 kb on + strand, within MIT1002_00793at 878.339 kb on + strand, within MIT1002_00793at 878.345 kb on - strand, within MIT1002_00793at 878.347 kb on - strand, within MIT1002_00793at 878.364 kb on - strand, within MIT1002_00793at 878.371 kb on + strand, within MIT1002_00793at 878.392 kb on - strand, within MIT1002_00793at 878.422 kb on - strand, within MIT1002_00793at 878.422 kb on - strand, within MIT1002_00793at 878.423 kb on + strand, within MIT1002_00793at 878.438 kb on + strand, within MIT1002_00793at 878.441 kb on - strand, within MIT1002_00793at 878.574 kb on - strand, within MIT1002_00793at 878.576 kb on - strand, within MIT1002_00793at 878.673 kb on - strand, within MIT1002_00793at 878.673 kb on - strand, within MIT1002_00793at 878.673 kb on - strand, within MIT1002_00793at 878.740 kb on + strand, within MIT1002_00793at 878.748 kb on - strand, within MIT1002_00793at 878.762 kb on + strand, within MIT1002_00793at 878.861 kb on + strand, within MIT1002_00793at 878.893 kb on + strand, within MIT1002_00793at 878.894 kb on + strand, within MIT1002_00793at 878.902 kb on - strand, within MIT1002_00793at 878.902 kb on - strand, within MIT1002_00793at 878.906 kb on + strand, within MIT1002_00793at 878.914 kb on - strand, within MIT1002_00793at 879.014 kb on + strandat 879.015 kb on + strandat 879.063 kb on + strandat 879.081 kb on - strandat 879.131 kb on + strandat 879.139 kb on - strandat 879.139 kb on - strandat 879.155 kb on + strandat 879.155 kb on + strandat 879.160 kb on - strandat 879.163 kb on - strandat 879.164 kb on + strandat 879.183 kb on - strandat 879.194 kb on - strandat 879.196 kb on + strandat 879.240 kb on - strandat 879.254 kb on - strandat 879.305 kb on + strandat 879.325 kb on - strandat 879.335 kb on - strandat 879.335 kb on - strandat 879.351 kb on + strandat 879.351 kb on - strandat 879.359 kb on - strand, within MIT1002_00794at 879.366 kb on - strand, within MIT1002_00794at 879.366 kb on - strand, within MIT1002_00794at 879.470 kb on - strand, within MIT1002_00794at 879.488 kb on - strand, within MIT1002_00794at 879.511 kb on + strand, within MIT1002_00794at 879.544 kb on - strand, within MIT1002_00794at 879.578 kb on + strand, within MIT1002_00794at 879.596 kb on + strand, within MIT1002_00794at 879.604 kb on - strand, within MIT1002_00794at 879.622 kb on + strand, within MIT1002_00794at 879.687 kb on - strand, within MIT1002_00794at 879.702 kb on + strand, within MIT1002_00794at 879.710 kb on - strand, within MIT1002_00794at 879.724 kb on + strand, within MIT1002_00794at 879.724 kb on + strand, within MIT1002_00794at 879.732 kb on - strand, within MIT1002_00794at 879.734 kb on - strand, within MIT1002_00794at 879.794 kb on - strand, within MIT1002_00794at 879.945 kb on + strand, within MIT1002_00794at 879.966 kb on + strand, within MIT1002_00794at 879.974 kb on + strand, within MIT1002_00794at 880.048 kb on + strand, within MIT1002_00794at 880.049 kb on + strand, within MIT1002_00794at 880.055 kb on + strand, within MIT1002_00794at 880.091 kb on - strand, within MIT1002_00794at 880.091 kb on - strand, within MIT1002_00794at 880.157 kb on + strand, within MIT1002_00794at 880.187 kb on + strand, within MIT1002_00794at 880.187 kb on + strand, within MIT1002_00794at 880.195 kb on - strand, within MIT1002_00794at 880.195 kb on - strand, within MIT1002_00794at 880.205 kb on - strand, within MIT1002_00794at 880.320 kb on + strand, within MIT1002_00794at 880.415 kb on + strand, within MIT1002_00794at 880.526 kb on - strand, within MIT1002_00794at 880.586 kb on - strand, within MIT1002_00794at 880.601 kb on + strand, within MIT1002_00794at 880.609 kb on - strand, within MIT1002_00794at 880.609 kb on - strand, within MIT1002_00794at 880.616 kb on + strand, within MIT1002_00794at 880.708 kb on - strand, within MIT1002_00794at 880.722 kb on + strand, within MIT1002_00794at 880.724 kb on + strand, within MIT1002_00794at 880.732 kb on - strand, within MIT1002_00794at 880.732 kb on - strand, within MIT1002_00794at 880.774 kb on + strand, within MIT1002_00794at 880.820 kb on - strand, within MIT1002_00794at 880.838 kb on + strand, within MIT1002_00794at 880.884 kb on - strand, within MIT1002_00794at 880.886 kb on + strand, within MIT1002_00794at 880.894 kb on - strand, within MIT1002_00794at 880.921 kb on + strand, within MIT1002_00794at 880.921 kb on + strand, within MIT1002_00794at 880.975 kb on + strand, within MIT1002_00794at 880.977 kb on - strand, within MIT1002_00794at 881.108 kb on + strandat 881.108 kb on + strandat 881.149 kb on - strandat 881.182 kb on + strandat 881.204 kb on + strandat 881.232 kb on + strandat 881.232 kb on + strandat 881.267 kb on - strandat 881.267 kb on - strandat 881.279 kb on + strandat 881.279 kb on + strandat 881.279 kb on + strandat 881.279 kb on + strandat 881.279 kb on + strandat 881.279 kb on + strandat 881.279 kb on + strandat 881.279 kb on + strandat 881.279 kb on + strandat 881.286 kb on + strandat 881.287 kb on - strandat 881.287 kb on - strandat 881.287 kb on - strandat 881.287 kb on - strandat 881.287 kb on - strandat 881.287 kb on - strandat 881.287 kb on - strandat 881.287 kb on - strandat 881.287 kb on - strandat 881.287 kb on - strandat 881.312 kb on + strandat 881.426 kb on + strand, within MIT1002_00795at 881.434 kb on - strand, within MIT1002_00795at 881.434 kb on - strand, within MIT1002_00795at 881.439 kb on - strand, within MIT1002_00795at 881.528 kb on - strand, within MIT1002_00795at 881.585 kb on + strand, within MIT1002_00795at 881.585 kb on + strand, within MIT1002_00795at 881.606 kb on + strand, within MIT1002_00795at 881.616 kb on - strand, within MIT1002_00795at 881.664 kb on + strand, within MIT1002_00795at 881.714 kb on - strand, within MIT1002_00795at 881.855 kb on + strand, within MIT1002_00795at 881.863 kb on - strand, within MIT1002_00795at 881.956 kb on + strand, within MIT1002_00795at 881.994 kb on - strand, within MIT1002_00795at 882.089 kb on - strand, within MIT1002_00795at 882.147 kb on - strand, within MIT1002_00795at 882.147 kb on - strand, within MIT1002_00795at 882.147 kb on - strand, within MIT1002_00795at 882.155 kb on + strand, within MIT1002_00795at 882.263 kb on - strandat 882.269 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4
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878,151 + MIT1002_00793 0.33 -0.4
878,155 + MIT1002_00793 0.33 -0.2
878,195 + MIT1002_00793 0.36 +1.9
878,203 - MIT1002_00793 0.36 -0.4
878,203 - MIT1002_00793 0.36 +0.1
878,212 + MIT1002_00793 0.37 +0.4
878,268 + MIT1002_00793 0.41 +2.0
878,278 + MIT1002_00793 0.41 -1.2
878,278 + MIT1002_00793 0.41 +0.6
878,286 - MIT1002_00793 0.42 +0.3
878,286 - MIT1002_00793 0.42 -1.2
878,317 + MIT1002_00793 0.44 -1.9
878,337 + MIT1002_00793 0.46 +0.5
878,337 - MIT1002_00793 0.46 +0.5
878,339 + MIT1002_00793 0.46 -0.8
878,339 + MIT1002_00793 0.46 +2.1
878,345 - MIT1002_00793 0.46 -1.4
878,347 - MIT1002_00793 0.46 -0.0
878,364 - MIT1002_00793 0.47 -1.1
878,371 + MIT1002_00793 0.48 +1.5
878,392 - MIT1002_00793 0.49 -2.6
878,422 - MIT1002_00793 0.51 +1.6
878,422 - MIT1002_00793 0.51 +0.7
878,423 + MIT1002_00793 0.51 -1.7
878,438 + MIT1002_00793 0.53 +1.4
878,441 - MIT1002_00793 0.53 -0.2
878,574 - MIT1002_00793 0.62 -0.7
878,576 - MIT1002_00793 0.62 -0.2
878,673 - MIT1002_00793 0.69 +1.1
878,673 - MIT1002_00793 0.69 +0.6
878,673 - MIT1002_00793 0.69 +0.3
878,740 + MIT1002_00793 0.73 -0.1
878,748 - MIT1002_00793 0.74 -0.5
878,762 + MIT1002_00793 0.75 -0.0
878,861 + MIT1002_00793 0.82 -0.8
878,893 + MIT1002_00793 0.84 -0.6
878,894 + MIT1002_00793 0.84 -0.0
878,902 - MIT1002_00793 0.85 -1.2
878,902 - MIT1002_00793 0.85 +0.6
878,906 + MIT1002_00793 0.85 -2.2
878,914 - MIT1002_00793 0.86 +1.4
879,014 + +1.7
879,015 + +2.3
879,063 + +0.3
879,081 - +0.8
879,131 + -0.9
879,139 - -0.8
879,139 - -0.1
879,155 + -2.3
879,155 + -0.9
879,160 - -2.6
879,163 - -3.4
879,164 + +0.1
879,183 - -0.5
879,194 - -1.1
879,196 + +1.2
879,240 - -2.1
879,254 - +0.0
879,305 + +0.3
879,325 - -0.5
879,335 - -2.7
879,335 - -0.9
879,351 + -1.4
879,351 - -0.0
879,359 - MIT1002_00794 0.10 -2.1
879,366 - MIT1002_00794 0.11 -1.7
879,366 - MIT1002_00794 0.11 +0.3
879,470 - MIT1002_00794 0.15 -0.6
879,488 - MIT1002_00794 0.16 +0.2
879,511 + MIT1002_00794 0.17 -1.0
879,544 - MIT1002_00794 0.19 +1.3
879,578 + MIT1002_00794 0.20 +1.5
879,596 + MIT1002_00794 0.21 -0.4
879,604 - MIT1002_00794 0.21 -0.6
879,622 + MIT1002_00794 0.22 +0.6
879,687 - MIT1002_00794 0.25 +0.9
879,702 + MIT1002_00794 0.26 -1.0
879,710 - MIT1002_00794 0.26 +0.1
879,724 + MIT1002_00794 0.27 -0.4
879,724 + MIT1002_00794 0.27 +0.6
879,732 - MIT1002_00794 0.27 -1.6
879,734 - MIT1002_00794 0.27 -0.7
879,794 - MIT1002_00794 0.30 -0.5
879,945 + MIT1002_00794 0.37 +0.9
879,966 + MIT1002_00794 0.38 -0.9
879,974 + MIT1002_00794 0.38 +0.5
880,048 + MIT1002_00794 0.42 -0.9
880,049 + MIT1002_00794 0.42 -1.1
880,055 + MIT1002_00794 0.42 -1.7
880,091 - MIT1002_00794 0.44 +1.1
880,091 - MIT1002_00794 0.44 -0.3
880,157 + MIT1002_00794 0.47 +0.3
880,187 + MIT1002_00794 0.48 -0.3
880,187 + MIT1002_00794 0.48 +0.3
880,195 - MIT1002_00794 0.49 -1.2
880,195 - MIT1002_00794 0.49 +0.3
880,205 - MIT1002_00794 0.49 -0.4
880,320 + MIT1002_00794 0.54 -3.9
880,415 + MIT1002_00794 0.59 -1.7
880,526 - MIT1002_00794 0.64 -0.5
880,586 - MIT1002_00794 0.66 +0.1
880,601 + MIT1002_00794 0.67 -3.4
880,609 - MIT1002_00794 0.67 +0.3
880,609 - MIT1002_00794 0.67 -0.5
880,616 + MIT1002_00794 0.68 -1.7
880,708 - MIT1002_00794 0.72 +0.3
880,722 + MIT1002_00794 0.73 -0.4
880,724 + MIT1002_00794 0.73 +0.2
880,732 - MIT1002_00794 0.73 -0.4
880,732 - MIT1002_00794 0.73 +0.5
880,774 + MIT1002_00794 0.75 +0.8
880,820 - MIT1002_00794 0.77 -0.3
880,838 + MIT1002_00794 0.78 -1.2
880,884 - MIT1002_00794 0.80 -0.8
880,886 + MIT1002_00794 0.80 -0.4
880,894 - MIT1002_00794 0.81 +0.6
880,921 + MIT1002_00794 0.82 -0.8
880,921 + MIT1002_00794 0.82 -1.1
880,975 + MIT1002_00794 0.84 -1.7
880,977 - MIT1002_00794 0.84 +0.9
881,108 + +0.1
881,108 + -0.2
881,149 - -0.5
881,182 + -0.2
881,204 + -1.7
881,232 + -0.3
881,232 + -0.3
881,267 - -1.0
881,267 - -0.7
881,279 + +0.5
881,279 + +1.1
881,279 + +0.4
881,279 + -0.7
881,279 + +0.2
881,279 + +1.0
881,279 + -1.1
881,279 + +0.2
881,279 + -1.0
881,286 + -1.0
881,287 - -0.0
881,287 - -0.7
881,287 - -0.3
881,287 - +0.2
881,287 - +0.4
881,287 - -0.5
881,287 - -0.9
881,287 - +0.8
881,287 - +0.1
881,287 - -0.2
881,312 + -0.5
881,426 + MIT1002_00795 0.14 -0.9
881,434 - MIT1002_00795 0.14 -0.8
881,434 - MIT1002_00795 0.14 -0.0
881,439 - MIT1002_00795 0.15 -0.7
881,528 - MIT1002_00795 0.24 -1.0
881,585 + MIT1002_00795 0.30 +0.2
881,585 + MIT1002_00795 0.30 +0.5
881,606 + MIT1002_00795 0.32 +0.4
881,616 - MIT1002_00795 0.33 -1.1
881,664 + MIT1002_00795 0.38 -0.4
881,714 - MIT1002_00795 0.44 +1.2
881,855 + MIT1002_00795 0.58 -1.4
881,863 - MIT1002_00795 0.59 +1.8
881,956 + MIT1002_00795 0.69 +0.2
881,994 - MIT1002_00795 0.73 +2.2
882,089 - MIT1002_00795 0.83 +0.4
882,147 - MIT1002_00795 0.89 +0.7
882,147 - MIT1002_00795 0.89 -0.9
882,147 - MIT1002_00795 0.89 -0.6
882,155 + MIT1002_00795 0.90 +0.7
882,263 - +0.3
882,269 + -0.7

Or see this region's nucleotide sequence