Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00742 and MIT1002_00743 are separated by 8 nucleotides MIT1002_00743 and MIT1002_00744 are separated by 176 nucleotides MIT1002_00744 and MIT1002_00745 are separated by 82 nucleotides
MIT1002_00742: MIT1002_00742 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase, at 813,924 to 814,418
_00742
MIT1002_00743: MIT1002_00743 - Undecaprenyl-diphosphatase, at 814,427 to 815,227
_00743
MIT1002_00744: MIT1002_00744 - HIT-like protein, at 815,404 to 815,775
_00744
MIT1002_00745: MIT1002_00745 - Peptidase family M49, at 815,858 to 817,552
_00745
Position (kb) 815
816 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 815.209 kb on - strand at 815.273 kb on + strand at 815.314 kb on - strand at 815.465 kb on + strand, within MIT1002_00744 at 815.491 kb on + strand, within MIT1002_00744 at 815.513 kb on - strand, within MIT1002_00744 at 815.623 kb on + strand, within MIT1002_00744 at 815.623 kb on + strand, within MIT1002_00744 at 815.623 kb on + strand, within MIT1002_00744 at 815.623 kb on + strand, within MIT1002_00744 at 815.631 kb on - strand, within MIT1002_00744 at 815.631 kb on - strand, within MIT1002_00744 at 815.646 kb on - strand, within MIT1002_00744 at 815.656 kb on + strand, within MIT1002_00744 at 815.664 kb on - strand, within MIT1002_00744 at 815.664 kb on - strand, within MIT1002_00744 at 815.733 kb on - strand, within MIT1002_00744 at 815.743 kb on - strand at 815.765 kb on + strand at 815.765 kb on + strand at 815.845 kb on + strand at 815.853 kb on - strand at 815.853 kb on - strand at 815.858 kb on - strand at 815.922 kb on + strand at 815.922 kb on + strand at 815.930 kb on - strand at 815.973 kb on - strand at 816.030 kb on + strand, within MIT1002_00745 at 816.034 kb on - strand, within MIT1002_00745 at 816.147 kb on + strand, within MIT1002_00745 at 816.178 kb on + strand, within MIT1002_00745 at 816.191 kb on - strand, within MIT1002_00745 at 816.199 kb on + strand, within MIT1002_00745 at 816.260 kb on + strand, within MIT1002_00745 at 816.268 kb on - strand, within MIT1002_00745 at 816.268 kb on - strand, within MIT1002_00745 at 816.268 kb on - strand, within MIT1002_00745 at 816.309 kb on - strand, within MIT1002_00745 at 816.328 kb on - strand, within MIT1002_00745 at 816.342 kb on + strand, within MIT1002_00745 at 816.351 kb on - strand, within MIT1002_00745 at 816.352 kb on - strand, within MIT1002_00745 at 816.361 kb on - strand, within MIT1002_00745 at 816.555 kb on + strand, within MIT1002_00745 at 816.573 kb on - strand, within MIT1002_00745 at 816.587 kb on + strand, within MIT1002_00745 at 816.591 kb on + strand, within MIT1002_00745 at 816.597 kb on - strand, within MIT1002_00745 at 816.599 kb on - strand, within MIT1002_00745 at 816.599 kb on - strand, within MIT1002_00745 at 816.627 kb on + strand, within MIT1002_00745 at 816.627 kb on + strand, within MIT1002_00745 at 816.627 kb on + strand, within MIT1002_00745 at 816.635 kb on - strand, within MIT1002_00745 at 816.635 kb on - strand, within MIT1002_00745 at 816.640 kb on + strand, within MIT1002_00745 at 816.687 kb on - strand, within MIT1002_00745 at 816.702 kb on + strand, within MIT1002_00745
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4 remove 815,209 - -0.4 815,273 + -0.2 815,314 - -0.4 815,465 + MIT1002_00744 0.16 -3.1 815,491 + MIT1002_00744 0.23 -1.4 815,513 - MIT1002_00744 0.29 -1.7 815,623 + MIT1002_00744 0.59 +0.5 815,623 + MIT1002_00744 0.59 -1.0 815,623 + MIT1002_00744 0.59 -0.5 815,623 + MIT1002_00744 0.59 -0.4 815,631 - MIT1002_00744 0.61 -1.6 815,631 - MIT1002_00744 0.61 -0.5 815,646 - MIT1002_00744 0.65 -0.4 815,656 + MIT1002_00744 0.68 -2.2 815,664 - MIT1002_00744 0.70 -0.2 815,664 - MIT1002_00744 0.70 +2.3 815,733 - MIT1002_00744 0.88 -0.8 815,743 - -0.2 815,765 + +0.3 815,765 + +0.7 815,845 + +1.6 815,853 - -0.3 815,853 - +0.8 815,858 - -2.0 815,922 + +0.7 815,922 + -2.5 815,930 - +0.3 815,973 - +0.6 816,030 + MIT1002_00745 0.10 +1.5 816,034 - MIT1002_00745 0.10 +1.0 816,147 + MIT1002_00745 0.17 -0.1 816,178 + MIT1002_00745 0.19 +2.1 816,191 - MIT1002_00745 0.20 +0.3 816,199 + MIT1002_00745 0.20 -0.1 816,260 + MIT1002_00745 0.24 -0.0 816,268 - MIT1002_00745 0.24 -0.7 816,268 - MIT1002_00745 0.24 +1.1 816,268 - MIT1002_00745 0.24 -0.9 816,309 - MIT1002_00745 0.27 +0.2 816,328 - MIT1002_00745 0.28 +0.3 816,342 + MIT1002_00745 0.29 -1.1 816,351 - MIT1002_00745 0.29 -1.7 816,352 - MIT1002_00745 0.29 +0.8 816,361 - MIT1002_00745 0.30 +0.4 816,555 + MIT1002_00745 0.41 +0.2 816,573 - MIT1002_00745 0.42 +0.2 816,587 + MIT1002_00745 0.43 +0.0 816,591 + MIT1002_00745 0.43 +0.1 816,597 - MIT1002_00745 0.44 -0.7 816,599 - MIT1002_00745 0.44 +0.7 816,599 - MIT1002_00745 0.44 +0.1 816,627 + MIT1002_00745 0.45 +0.4 816,627 + MIT1002_00745 0.45 -0.6 816,627 + MIT1002_00745 0.45 +0.5 816,635 - MIT1002_00745 0.46 +1.8 816,635 - MIT1002_00745 0.46 -2.6 816,640 + MIT1002_00745 0.46 -0.5 816,687 - MIT1002_00745 0.49 -0.9 816,702 + MIT1002_00745 0.50 +0.1
Or see this region's nucleotide sequence