Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00710

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00709 and MIT1002_00710 are separated by 88 nucleotidesMIT1002_00710 and MIT1002_00711 are separated by 16 nucleotides MIT1002_00709: MIT1002_00709 - Nitrate transport protein NrtA precursor, at 776,256 to 777,665 _00709 MIT1002_00710: MIT1002_00710 - Bicarbonate transport system permease protein CmpB, at 777,754 to 778,749 _00710 MIT1002_00711: MIT1002_00711 - Bicarbonate transport ATP-binding protein CmpD, at 778,766 to 779,668 _00711 Position (kb) 777 778 779Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 776.779 kb on + strand, within MIT1002_00709at 776.835 kb on - strand, within MIT1002_00709at 776.879 kb on - strand, within MIT1002_00709at 776.879 kb on - strand, within MIT1002_00709at 776.992 kb on + strand, within MIT1002_00709at 776.995 kb on - strand, within MIT1002_00709at 777.000 kb on - strand, within MIT1002_00709at 777.023 kb on + strand, within MIT1002_00709at 777.030 kb on + strand, within MIT1002_00709at 777.031 kb on + strand, within MIT1002_00709at 777.031 kb on - strand, within MIT1002_00709at 777.039 kb on - strand, within MIT1002_00709at 777.099 kb on + strand, within MIT1002_00709at 777.099 kb on + strand, within MIT1002_00709at 777.099 kb on + strand, within MIT1002_00709at 777.099 kb on + strand, within MIT1002_00709at 777.099 kb on + strand, within MIT1002_00709at 777.107 kb on - strand, within MIT1002_00709at 777.107 kb on - strand, within MIT1002_00709at 777.107 kb on - strand, within MIT1002_00709at 777.107 kb on - strand, within MIT1002_00709at 777.107 kb on - strand, within MIT1002_00709at 777.107 kb on - strand, within MIT1002_00709at 777.107 kb on - strand, within MIT1002_00709at 777.107 kb on - strand, within MIT1002_00709at 777.134 kb on + strand, within MIT1002_00709at 777.143 kb on + strand, within MIT1002_00709at 777.143 kb on + strand, within MIT1002_00709at 777.233 kb on + strand, within MIT1002_00709at 777.233 kb on + strand, within MIT1002_00709at 777.241 kb on - strand, within MIT1002_00709at 777.261 kb on + strand, within MIT1002_00709at 777.304 kb on + strand, within MIT1002_00709at 777.484 kb on + strand, within MIT1002_00709at 777.520 kb on - strand, within MIT1002_00709at 777.608 kb on + strandat 777.608 kb on + strandat 777.647 kb on - strandat 777.652 kb on + strandat 777.701 kb on - strandat 777.701 kb on - strandat 777.701 kb on - strandat 777.701 kb on - strandat 777.701 kb on - strandat 777.701 kb on - strandat 777.717 kb on - strandat 777.717 kb on - strandat 777.717 kb on - strandat 777.740 kb on - strandat 777.762 kb on + strandat 777.775 kb on - strandat 777.831 kb on + strandat 777.839 kb on - strandat 777.854 kb on - strand, within MIT1002_00710at 777.856 kb on + strand, within MIT1002_00710at 777.873 kb on + strand, within MIT1002_00710at 777.916 kb on + strand, within MIT1002_00710at 777.955 kb on - strand, within MIT1002_00710at 777.957 kb on + strand, within MIT1002_00710at 777.980 kb on + strand, within MIT1002_00710at 778.089 kb on - strand, within MIT1002_00710at 778.123 kb on + strand, within MIT1002_00710at 778.125 kb on + strand, within MIT1002_00710at 778.125 kb on + strand, within MIT1002_00710at 778.125 kb on + strand, within MIT1002_00710at 778.131 kb on - strand, within MIT1002_00710at 778.373 kb on + strand, within MIT1002_00710at 778.428 kb on - strand, within MIT1002_00710at 778.450 kb on + strand, within MIT1002_00710at 778.457 kb on - strand, within MIT1002_00710at 778.457 kb on - strand, within MIT1002_00710at 778.541 kb on + strand, within MIT1002_00710at 778.571 kb on + strand, within MIT1002_00710at 778.654 kb on - strandat 778.669 kb on - strandat 778.681 kb on + strandat 778.681 kb on + strandat 778.689 kb on - strandat 778.699 kb on - strandat 778.825 kb on + strandat 778.926 kb on - strand, within MIT1002_00711at 778.982 kb on - strand, within MIT1002_00711at 778.990 kb on + strand, within MIT1002_00711at 778.990 kb on + strand, within MIT1002_00711at 778.998 kb on - strand, within MIT1002_00711at 778.998 kb on - strand, within MIT1002_00711at 778.998 kb on - strand, within MIT1002_00711at 778.998 kb on - strand, within MIT1002_00711at 778.998 kb on - strand, within MIT1002_00711at 779.030 kb on + strand, within MIT1002_00711at 779.040 kb on + strand, within MIT1002_00711at 779.130 kb on + strand, within MIT1002_00711at 779.130 kb on + strand, within MIT1002_00711at 779.130 kb on + strand, within MIT1002_00711at 779.130 kb on + strand, within MIT1002_00711at 779.130 kb on + strand, within MIT1002_00711at 779.130 kb on + strand, within MIT1002_00711at 779.130 kb on + strand, within MIT1002_00711at 779.130 kb on + strand, within MIT1002_00711at 779.130 kb on + strand, within MIT1002_00711at 779.130 kb on + strand, within MIT1002_00711at 779.130 kb on + strand, within MIT1002_00711at 779.138 kb on - strand, within MIT1002_00711at 779.138 kb on - strand, within MIT1002_00711at 779.138 kb on - strand, within MIT1002_00711at 779.138 kb on - strand, within MIT1002_00711at 779.138 kb on - strand, within MIT1002_00711at 779.158 kb on - strand, within MIT1002_00711at 779.158 kb on - strand, within MIT1002_00711at 779.190 kb on + strand, within MIT1002_00711at 779.190 kb on + strand, within MIT1002_00711at 779.198 kb on - strand, within MIT1002_00711at 779.253 kb on - strand, within MIT1002_00711at 779.285 kb on - strand, within MIT1002_00711at 779.302 kb on - strand, within MIT1002_00711at 779.324 kb on + strand, within MIT1002_00711at 779.352 kb on + strand, within MIT1002_00711at 779.466 kb on + strand, within MIT1002_00711at 779.673 kb on + strandat 779.683 kb on + strandat 779.686 kb on - strandat 779.711 kb on - strandat 779.721 kb on - strandat 779.726 kb on + strandat 779.736 kb on + strandat 779.744 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4
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776,779 + MIT1002_00709 0.37 +0.2
776,835 - MIT1002_00709 0.41 -2.0
776,879 - MIT1002_00709 0.44 +0.0
776,879 - MIT1002_00709 0.44 -0.1
776,992 + MIT1002_00709 0.52 -1.9
776,995 - MIT1002_00709 0.52 -1.1
777,000 - MIT1002_00709 0.53 +2.3
777,023 + MIT1002_00709 0.54 +0.1
777,030 + MIT1002_00709 0.55 +0.2
777,031 + MIT1002_00709 0.55 +0.1
777,031 - MIT1002_00709 0.55 +0.2
777,039 - MIT1002_00709 0.56 +0.0
777,099 + MIT1002_00709 0.60 -0.0
777,099 + MIT1002_00709 0.60 -1.9
777,099 + MIT1002_00709 0.60 +0.4
777,099 + MIT1002_00709 0.60 +0.8
777,099 + MIT1002_00709 0.60 +1.6
777,107 - MIT1002_00709 0.60 +1.0
777,107 - MIT1002_00709 0.60 -0.4
777,107 - MIT1002_00709 0.60 -0.7
777,107 - MIT1002_00709 0.60 +0.2
777,107 - MIT1002_00709 0.60 -0.1
777,107 - MIT1002_00709 0.60 -1.7
777,107 - MIT1002_00709 0.60 +1.7
777,107 - MIT1002_00709 0.60 +1.7
777,134 + MIT1002_00709 0.62 -0.3
777,143 + MIT1002_00709 0.63 +0.1
777,143 + MIT1002_00709 0.63 -1.0
777,233 + MIT1002_00709 0.69 -0.1
777,233 + MIT1002_00709 0.69 -0.5
777,241 - MIT1002_00709 0.70 -0.2
777,261 + MIT1002_00709 0.71 +0.5
777,304 + MIT1002_00709 0.74 -0.4
777,484 + MIT1002_00709 0.87 -0.1
777,520 - MIT1002_00709 0.90 -0.9
777,608 + -1.7
777,608 + -0.0
777,647 - -0.5
777,652 + +1.2
777,701 - -2.0
777,701 - +0.5
777,701 - +2.1
777,701 - +0.2
777,701 - +1.9
777,701 - -0.4
777,717 - -0.0
777,717 - -0.1
777,717 - -0.5
777,740 - +1.4
777,762 + -0.3
777,775 - +0.1
777,831 + -0.0
777,839 - -1.2
777,854 - MIT1002_00710 0.10 +1.1
777,856 + MIT1002_00710 0.10 -0.1
777,873 + MIT1002_00710 0.12 +0.9
777,916 + MIT1002_00710 0.16 +1.9
777,955 - MIT1002_00710 0.20 +0.0
777,957 + MIT1002_00710 0.20 +0.7
777,980 + MIT1002_00710 0.23 +1.6
778,089 - MIT1002_00710 0.34 +0.2
778,123 + MIT1002_00710 0.37 +1.7
778,125 + MIT1002_00710 0.37 +0.8
778,125 + MIT1002_00710 0.37 +0.2
778,125 + MIT1002_00710 0.37 -0.0
778,131 - MIT1002_00710 0.38 +0.2
778,373 + MIT1002_00710 0.62 -0.3
778,428 - MIT1002_00710 0.68 +2.1
778,450 + MIT1002_00710 0.70 -0.0
778,457 - MIT1002_00710 0.71 +0.2
778,457 - MIT1002_00710 0.71 -0.2
778,541 + MIT1002_00710 0.79 +0.1
778,571 + MIT1002_00710 0.82 +1.6
778,654 - +1.3
778,669 - +1.0
778,681 + +0.6
778,681 + +0.4
778,689 - +0.7
778,699 - -2.4
778,825 + -1.3
778,926 - MIT1002_00711 0.18 +0.1
778,982 - MIT1002_00711 0.24 -0.9
778,990 + MIT1002_00711 0.25 +0.6
778,990 + MIT1002_00711 0.25 -0.7
778,998 - MIT1002_00711 0.26 -0.1
778,998 - MIT1002_00711 0.26 +0.9
778,998 - MIT1002_00711 0.26 -0.2
778,998 - MIT1002_00711 0.26 +0.9
778,998 - MIT1002_00711 0.26 +1.8
779,030 + MIT1002_00711 0.29 -0.5
779,040 + MIT1002_00711 0.30 +0.9
779,130 + MIT1002_00711 0.40 +1.3
779,130 + MIT1002_00711 0.40 -2.0
779,130 + MIT1002_00711 0.40 -0.3
779,130 + MIT1002_00711 0.40 +0.9
779,130 + MIT1002_00711 0.40 -1.2
779,130 + MIT1002_00711 0.40 +0.1
779,130 + MIT1002_00711 0.40 +1.3
779,130 + MIT1002_00711 0.40 +0.2
779,130 + MIT1002_00711 0.40 -0.2
779,130 + MIT1002_00711 0.40 -1.0
779,130 + MIT1002_00711 0.40 +0.8
779,138 - MIT1002_00711 0.41 +1.3
779,138 - MIT1002_00711 0.41 +0.5
779,138 - MIT1002_00711 0.41 -2.8
779,138 - MIT1002_00711 0.41 -2.1
779,138 - MIT1002_00711 0.41 +0.2
779,158 - MIT1002_00711 0.43 +0.5
779,158 - MIT1002_00711 0.43 -0.1
779,190 + MIT1002_00711 0.47 -0.5
779,190 + MIT1002_00711 0.47 +0.2
779,198 - MIT1002_00711 0.48 +2.2
779,253 - MIT1002_00711 0.54 -0.8
779,285 - MIT1002_00711 0.57 +0.2
779,302 - MIT1002_00711 0.59 -0.5
779,324 + MIT1002_00711 0.62 -0.4
779,352 + MIT1002_00711 0.65 +0.4
779,466 + MIT1002_00711 0.78 +0.3
779,673 + -0.4
779,683 + +0.4
779,686 - -2.3
779,711 - +0.2
779,721 - +1.7
779,726 + +0.5
779,736 + -1.1
779,744 - +0.0

Or see this region's nucleotide sequence